Wall clock time and date at job start Tue Mar 31 2020 13:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47010 * 2 1 4 4 N 1.46492 * 109.47496 * 119.99817 * 2 1 3 5 5 C 1.34773 * 120.00179 * 119.99498 * 4 2 1 6 6 O 1.21283 * 120.00624 * 183.74963 * 5 4 2 7 7 C 1.50700 * 119.99837 * 3.75634 * 5 4 2 8 8 N 1.46900 * 109.47371 * 184.62142 * 7 5 4 9 9 C 1.46902 * 110.99902 * 75.94227 * 8 7 5 10 10 C 1.50697 * 109.47145 * 190.00206 * 9 8 7 11 11 H 1.08007 * 120.00309 * 0.02562 * 10 9 8 12 12 C 1.37881 * 120.00348 * 180.02562 * 10 9 8 13 13 N 1.31520 * 119.99400 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 120.00287 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47162 * 59.99598 * 14 12 10 16 16 H 1.48497 * 109.47244 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.46994 * 299.99626 * 14 12 10 18 18 C 1.46901 * 111.00452 * 199.89515 * 8 7 5 19 19 C 1.53002 * 109.46981 * 75.63855 * 18 8 7 20 20 C 1.53000 * 117.49936 * 242.94998 * 19 18 8 21 21 C 1.52996 * 117.50258 * 174.32686 * 19 18 8 22 22 C 1.46506 * 120.00169 * 300.00073 * 4 2 1 23 23 C 1.54272 * 110.03099 * 113.84705 * 22 4 2 24 24 C 1.54962 * 104.15941 * 95.75782 * 23 22 4 25 25 C 1.54887 * 102.77969 * 37.88613 * 24 23 22 26 26 C 1.53868 * 110.03153 * 231.06262 * 22 4 2 27 27 H 1.09007 * 109.47059 * 300.00114 * 1 2 3 28 28 H 1.08996 * 109.47320 * 59.99763 * 1 2 3 29 29 H 1.08992 * 109.47014 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46852 * 240.00340 * 2 1 3 31 31 H 1.09000 * 109.47057 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.47173 * 299.99874 * 3 2 1 33 33 H 1.08994 * 109.47230 * 60.00306 * 3 2 1 34 34 H 1.09000 * 109.47127 * 304.62347 * 7 5 4 35 35 H 1.09004 * 109.47468 * 64.62452 * 7 5 4 36 36 H 1.08996 * 109.46876 * 310.00219 * 9 8 7 37 37 H 1.08996 * 109.47100 * 70.00352 * 9 8 7 38 38 H 0.96997 * 119.99156 * 180.02562 * 13 12 10 39 39 H 1.08995 * 109.47302 * 195.63949 * 18 8 7 40 40 H 1.08997 * 109.46936 * 315.64621 * 18 8 7 41 41 H 1.09005 * 115.55200 * 28.65534 * 19 18 8 42 42 H 1.09004 * 117.50145 * 359.97438 * 20 19 18 43 43 H 1.08997 * 117.49984 * 145.02193 * 20 19 18 44 44 H 1.08998 * 117.50124 * 214.98233 * 21 19 18 45 45 H 1.09002 * 117.49588 * 359.97438 * 21 19 18 46 46 H 1.08996 * 110.01380 * 352.45788 * 22 4 2 47 47 H 1.08998 * 110.48296 * 214.40381 * 23 22 4 48 48 H 1.09005 * 110.48627 * 337.04444 * 23 22 4 49 49 H 1.09007 * 110.71667 * 279.57093 * 24 23 22 50 50 H 1.08999 * 110.92050 * 156.29751 * 24 23 22 51 51 H 1.09003 * 110.48657 * 203.40972 * 25 24 23 52 52 H 1.08996 * 110.60031 * 80.81621 * 25 24 23 53 53 H 1.08999 * 110.03353 * 359.95167 * 26 22 4 54 54 H 1.09009 * 110.03089 * 121.38250 * 26 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6905 1.1961 5 6 2.7932 -1.7863 1.0725 6 8 3.1414 -2.3976 2.0605 7 6 3.2271 -2.2521 -0.2935 8 7 3.9636 -3.5170 -0.1685 9 6 3.0466 -4.6383 0.0755 10 6 3.8404 -5.8662 0.4405 11 1 4.9184 -5.8183 0.4870 12 6 3.1906 -7.0509 0.7151 13 7 1.8779 -7.1091 0.6589 14 14 4.1745 -8.5726 1.1682 15 1 4.9645 -8.3037 2.3965 16 1 3.2475 -9.7062 1.4148 17 1 5.0938 -8.9176 0.0541 18 6 4.7921 -3.7634 -1.3563 19 6 6.0286 -2.8633 -1.3113 20 6 6.1888 -1.8269 -2.4254 21 6 7.0885 -3.0641 -2.3962 22 6 1.6645 -0.1900 2.5268 23 6 0.7619 -1.2094 3.2520 24 6 1.7440 -2.0338 4.1221 25 6 2.7555 -0.9642 4.6038 26 6 2.9318 -0.0344 3.3855 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 3.1300 1.4426 -0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 2.3492 -2.4035 -0.9216 35 1 3.8723 -1.4992 -0.7462 36 1 2.3725 -4.3850 0.8937 37 1 2.4661 -4.8356 -0.8257 38 1 1.4208 -7.9424 0.8524 39 1 5.1035 -4.8078 -1.3718 40 1 4.2148 -3.5429 -2.2541 41 1 6.3743 -2.5887 -0.3147 42 1 5.4136 -1.7867 -3.1907 43 1 6.6399 -0.8703 -2.1619 44 1 8.1315 -2.9214 -2.1134 45 1 6.9052 -3.8378 -3.1418 46 1 1.1517 0.7680 2.4408 47 1 0.0346 -0.6955 3.8805 48 1 0.2573 -1.8528 2.5311 49 1 2.2433 -2.7957 3.5234 50 1 1.2280 -2.4866 4.9687 51 1 3.7049 -1.4292 4.8694 52 1 2.3528 -0.4100 5.4516 53 1 3.8100 -0.3321 2.8126 54 1 3.0340 0.9992 3.7164 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081515245.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:05 Heat of formation + Delta-G solvation = -17.751215 kcal Electronic energy + Delta-G solvation = -29992.727160 eV Core-core repulsion = 26350.821916 eV Total energy + Delta-G solvation = -3641.905244 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.56505 -39.26990 -37.85878 -37.10318 -36.53770 -34.54588 -32.26479 -30.32726 -29.59453 -29.19379 -28.08888 -27.94248 -25.95812 -23.41631 -23.08250 -22.58401 -21.86821 -21.48486 -21.03676 -19.11660 -18.56232 -18.19081 -17.17522 -16.97595 -16.46308 -16.31031 -16.00663 -15.65287 -15.51526 -15.17461 -14.91730 -14.86598 -14.52387 -14.11001 -14.08198 -13.86153 -13.53475 -13.32717 -13.18980 -13.04265 -12.87819 -12.63228 -12.60429 -12.50329 -12.28762 -12.19732 -12.14557 -12.01755 -11.92884 -11.90044 -11.88116 -11.79181 -11.63512 -11.34029 -11.32096 -11.08051 -10.72493 -10.57691 -10.13064 -9.39764 -8.94441 -8.19439 -6.27425 1.36462 1.41346 1.48497 1.88530 2.08909 2.39831 2.97029 3.12785 3.26399 3.62492 3.78326 3.85629 3.93525 4.01335 4.12216 4.13611 4.16282 4.23375 4.31581 4.35614 4.43269 4.47122 4.55471 4.60870 4.71345 4.76422 4.79792 4.82015 4.83049 4.85510 4.87445 4.92482 4.96499 5.01315 5.06514 5.08525 5.11261 5.14129 5.17502 5.30095 5.31570 5.33866 5.37769 5.43065 5.44472 5.46816 5.64091 5.72049 6.00415 6.07525 6.39012 6.50582 6.72827 6.87159 7.40482 7.63545 8.91778 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.009328 B = 0.005090 C = 0.003910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3000.989797 B = 5499.899611 C = 7160.014279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.119 3.881 3 C -0.152 4.152 4 N -0.606 5.606 5 C 0.503 3.497 6 O -0.526 6.526 7 C 0.043 3.957 8 N -0.527 5.527 9 C 0.224 3.776 10 C -0.515 4.515 11 H 0.057 0.943 12 C 0.001 3.999 13 N -0.935 5.935 14 Si 0.965 3.035 15 H -0.275 1.275 16 H -0.281 1.281 17 H -0.263 1.263 18 C 0.098 3.902 19 C -0.158 4.158 20 C -0.164 4.164 21 C -0.174 4.174 22 C 0.151 3.849 23 C -0.124 4.124 24 C -0.143 4.143 25 C -0.104 4.104 26 C -0.118 4.118 27 H 0.067 0.933 28 H 0.089 0.911 29 H 0.034 0.966 30 H 0.087 0.913 31 H 0.054 0.946 32 H 0.087 0.913 33 H 0.066 0.934 34 H 0.048 0.952 35 H 0.117 0.883 36 H -0.001 1.001 37 H -0.043 1.043 38 H 0.262 0.738 39 H 0.060 0.940 40 H 0.030 0.970 41 H 0.092 0.908 42 H 0.098 0.902 43 H 0.107 0.893 44 H 0.104 0.896 45 H 0.093 0.907 46 H 0.118 0.882 47 H 0.090 0.910 48 H 0.038 0.962 49 H 0.068 0.932 50 H 0.045 0.955 51 H 0.040 0.960 52 H 0.078 0.922 53 H 0.045 0.955 54 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.185 21.451 -3.269 21.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.017 3.983 3 C -0.210 4.210 4 N -0.341 5.341 5 C 0.291 3.709 6 O -0.402 6.402 7 C -0.088 4.088 8 N -0.250 5.250 9 C 0.098 3.902 10 C -0.553 4.553 11 H 0.075 0.925 12 C -0.196 4.196 13 N -0.576 5.576 14 Si 0.790 3.210 15 H -0.201 1.201 16 H -0.206 1.206 17 H -0.187 1.187 18 C -0.030 4.030 19 C -0.177 4.177 20 C -0.201 4.201 21 C -0.211 4.211 22 C 0.048 3.952 23 C -0.163 4.163 24 C -0.180 4.180 25 C -0.142 4.142 26 C -0.156 4.156 27 H 0.086 0.914 28 H 0.107 0.893 29 H 0.053 0.947 30 H 0.105 0.895 31 H 0.073 0.927 32 H 0.106 0.894 33 H 0.085 0.915 34 H 0.066 0.934 35 H 0.134 0.866 36 H 0.017 0.983 37 H -0.026 1.026 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.049 0.951 41 H 0.110 0.890 42 H 0.117 0.883 43 H 0.126 0.874 44 H 0.123 0.877 45 H 0.111 0.889 46 H 0.136 0.864 47 H 0.108 0.892 48 H 0.056 0.944 49 H 0.087 0.913 50 H 0.064 0.936 51 H 0.059 0.941 52 H 0.097 0.903 53 H 0.064 0.936 54 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.540 21.043 -2.327 21.178 hybrid contribution -0.480 -1.651 -0.273 1.741 sum 0.060 19.392 -2.600 19.565 Atomic orbital electron populations 1.22149 0.94203 1.01494 1.03739 1.21430 0.95127 0.94683 0.87101 1.22106 1.01347 0.93885 1.03656 1.48324 1.50688 1.27894 1.07199 1.20851 0.78597 0.79971 0.91514 1.90592 1.54899 1.55216 1.39471 1.22007 0.98132 0.94442 0.94211 1.61605 1.24155 1.01486 1.37804 1.19208 0.90384 0.88194 0.92450 1.21374 0.93520 0.94633 1.45792 0.92470 1.25867 0.95919 1.02303 0.95529 1.70090 1.08868 1.27741 1.50897 0.85503 0.78370 0.78134 0.79020 1.20058 1.20626 1.18729 1.21523 0.92595 0.99194 0.89694 1.22169 0.97788 1.02534 0.95168 1.23117 1.02752 0.94025 1.00231 1.22991 0.96397 1.00608 1.01104 1.21679 0.94967 0.97134 0.81458 1.22688 0.97594 0.97566 0.98436 1.22860 0.97183 0.99361 0.98611 1.22097 0.98191 0.96288 0.97589 1.22356 0.97331 0.99764 0.96161 0.91372 0.89270 0.94709 0.89471 0.92734 0.89448 0.91472 0.93388 0.86561 0.98319 1.02550 0.92887 0.92133 0.95149 0.88985 0.88330 0.87430 0.87742 0.88888 0.86443 0.89183 0.94351 0.91338 0.93589 0.94107 0.90295 0.93601 0.89394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.78 9.19 71.98 0.66 -2.12 16 2 C 0.12 2.35 3.10 44.99 0.14 2.49 16 3 C -0.15 -2.05 9.18 71.98 0.66 -1.39 16 4 N -0.61 -16.62 2.28 -770.05 -1.76 -18.38 16 5 C 0.50 18.87 6.29 87.66 0.55 19.42 16 6 O -0.53 -24.47 9.71 -3.04 -0.03 -24.50 16 7 C 0.04 1.58 3.69 85.56 0.32 1.90 16 8 N -0.53 -24.00 3.96 -905.38 -3.58 -27.58 16 9 C 0.22 12.72 4.36 85.56 0.37 13.10 16 10 C -0.51 -31.22 8.23 25.60 0.21 -31.01 16 11 H 0.06 3.44 7.31 -2.91 -0.02 3.42 16 12 C 0.00 0.08 5.46 84.65 0.46 0.54 16 13 N -0.94 -59.35 13.29 21.45 0.28 -59.07 16 14 Si 0.97 47.14 29.54 68.60 2.03 49.17 16 15 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 16 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 17 H -0.26 -12.10 7.11 99.48 0.71 -11.40 16 18 C 0.10 3.85 5.07 86.30 0.44 4.29 16 19 C -0.16 -4.93 5.15 -10.79 -0.06 -4.99 16 20 C -0.16 -3.71 10.12 30.59 0.31 -3.40 16 21 C -0.17 -4.30 10.25 30.59 0.31 -3.99 16 22 C 0.15 3.71 2.53 45.71 0.12 3.82 16 23 C -0.12 -3.60 6.20 31.70 0.20 -3.41 16 24 C -0.14 -5.04 6.25 31.91 0.20 -4.84 16 25 C -0.10 -3.04 6.62 31.67 0.21 -2.83 16 26 C -0.12 -3.08 5.85 31.32 0.18 -2.90 16 27 H 0.07 1.06 7.25 -2.38 -0.02 1.05 16 28 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.09 1.78 5.75 -2.39 -0.01 1.76 16 31 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.07 0.80 6.90 -2.39 -0.02 0.79 16 34 H 0.05 1.73 7.23 -2.39 -0.02 1.71 16 35 H 0.12 3.46 7.19 -2.38 -0.02 3.45 16 36 H 0.00 -0.08 6.87 -2.39 -0.02 -0.10 16 37 H -0.04 -2.60 8.12 -2.39 -0.02 -2.62 16 38 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 39 H 0.06 2.75 6.58 -2.39 -0.02 2.73 16 40 H 0.03 1.11 7.73 -2.39 -0.02 1.09 16 41 H 0.09 3.21 8.14 -2.38 -0.02 3.19 16 42 H 0.10 2.05 8.03 -2.39 -0.02 2.03 16 43 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 44 H 0.10 2.27 8.14 -2.39 -0.02 2.26 16 45 H 0.09 2.28 8.14 -2.39 -0.02 2.27 16 46 H 0.12 2.05 6.17 -2.39 -0.01 2.04 16 47 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 48 H 0.04 1.31 8.04 -2.38 -0.02 1.29 16 49 H 0.07 3.20 4.94 -10.38 -0.05 3.15 16 50 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 51 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 52 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 53 H 0.05 1.48 6.57 -2.39 -0.02 1.46 16 54 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 Total: -1.00 -75.52 406.48 3.03 -72.49 By element: Atomic # 1 Polarization: 22.38 SS G_CDS: 0.80 Total: 23.18 kcal Atomic # 6 Polarization: -20.60 SS G_CDS: 5.28 Total: -15.32 kcal Atomic # 7 Polarization: -99.97 SS G_CDS: -5.05 Total: -105.02 kcal Atomic # 8 Polarization: -24.47 SS G_CDS: -0.03 Total: -24.50 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 2.03 Total: 49.17 kcal Total: -75.52 3.03 -72.49 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081515245.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.737 kcal (2) G-P(sol) polarization free energy of solvation -75.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds