Wall clock time and date at job start Tue Mar 31 2020 13:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47302 * 2 1 4 4 N 1.46504 * 109.47086 * 180.02562 * 3 2 1 5 5 C 1.36936 * 120.00036 * 270.00499 * 4 3 2 6 6 H 1.07999 * 120.00132 * 140.90476 * 5 4 3 7 7 C 1.38816 * 120.00005 * 320.91022 * 5 4 3 8 8 N 1.31618 * 120.00088 * 165.57248 * 7 5 4 9 9 Si 1.86801 * 119.99875 * 345.56979 * 7 5 4 10 10 H 1.48503 * 109.47207 * 90.79857 * 9 7 5 11 11 H 1.48503 * 109.46794 * 210.79525 * 9 7 5 12 12 H 1.48497 * 109.47083 * 330.79361 * 9 7 5 13 13 C 1.46498 * 119.99773 * 90.00370 * 4 3 2 14 14 C 1.50696 * 109.47191 * 264.14969 * 13 4 3 15 15 O 1.21282 * 120.00077 * 349.91676 * 14 13 4 16 16 N 1.34777 * 120.00016 * 169.63523 * 14 13 4 17 17 C 1.46501 * 119.99762 * 177.26533 * 16 14 13 18 18 C 1.52994 * 117.50327 * 16.28165 * 17 16 14 19 19 C 1.52991 * 117.50035 * 307.65601 * 17 16 14 20 20 C 1.46501 * 119.99886 * 357.26331 * 16 14 13 21 21 C 1.52999 * 109.47025 * 180.66998 * 20 16 14 22 22 C 1.53007 * 109.47181 * 299.99921 * 21 20 16 23 23 C 1.52995 * 109.46983 * 300.00414 * 22 21 20 24 24 C 1.52999 * 109.46978 * 179.97438 * 23 22 21 25 25 C 1.52999 * 109.47500 * 59.99782 * 23 22 21 26 26 C 1.52998 * 109.47050 * 60.67063 * 20 16 14 27 27 H 1.09003 * 109.46918 * 299.99934 * 1 2 3 28 28 H 1.09003 * 109.47246 * 59.98921 * 1 2 3 29 29 H 1.08998 * 109.47426 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46636 * 240.00496 * 2 1 3 31 31 H 1.08993 * 109.47212 * 120.01106 * 2 1 3 32 32 H 1.09001 * 109.46445 * 60.00555 * 3 2 1 33 33 H 1.08992 * 109.47372 * 300.00604 * 3 2 1 34 34 H 0.96992 * 120.00116 * 179.97438 * 8 7 5 35 35 H 1.09003 * 109.46883 * 144.15403 * 13 4 3 36 36 H 1.08998 * 109.46925 * 24.15024 * 13 4 3 37 37 H 1.09003 * 115.54732 * 161.99180 * 17 16 14 38 38 H 1.09005 * 117.49758 * 0.02562 * 18 17 16 39 39 H 1.09005 * 117.49947 * 145.01686 * 18 17 16 40 40 H 1.09003 * 117.50245 * 214.98494 * 19 17 16 41 41 H 1.09003 * 117.49730 * 359.97438 * 19 17 16 42 42 H 1.08997 * 109.47202 * 300.66947 * 20 16 14 43 43 H 1.09001 * 109.47519 * 59.99922 * 21 20 16 44 44 H 1.09000 * 109.47356 * 180.02562 * 21 20 16 45 45 H 1.09002 * 109.47168 * 179.97438 * 22 21 20 46 46 H 1.09000 * 109.46639 * 59.99973 * 22 21 20 47 47 H 1.09000 * 109.47073 * 299.99294 * 23 22 21 48 48 H 1.08997 * 109.47330 * 299.99868 * 24 23 22 49 49 H 1.09005 * 109.47310 * 60.00282 * 24 23 22 50 50 H 1.09004 * 109.47258 * 179.97438 * 24 23 22 51 51 H 1.09001 * 109.47519 * 180.02562 * 25 23 22 52 52 H 1.08997 * 109.46974 * 60.00030 * 25 23 22 53 53 H 1.08997 * 109.47066 * 180.02562 * 26 20 16 54 54 H 1.09002 * 109.47249 * 299.99813 * 26 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1903 1.4421 1.1850 6 1 5.0889 0.8523 1.2892 7 6 3.7297 2.1999 2.2530 8 7 4.2056 1.9905 3.4621 9 14 2.4346 3.5169 1.9740 10 1 1.0832 2.9279 2.1528 11 1 2.6286 4.6169 2.9526 12 1 2.5627 4.0528 0.5951 13 6 4.2370 1.4427 -1.2697 14 6 4.6133 0.0294 -1.6328 15 8 4.4666 -0.8637 -0.8254 16 7 5.1077 -0.2431 -2.8566 17 6 5.5296 -1.6060 -3.1894 18 6 5.0469 -2.7371 -2.2792 19 6 6.5107 -2.2939 -2.2382 20 6 5.2231 0.8236 -3.8541 21 6 5.7931 0.2485 -5.1523 22 6 7.1756 -0.3487 -4.8818 23 6 8.1086 0.7434 -4.3549 24 6 9.4909 0.1461 -4.0839 25 6 7.5386 1.3186 -3.0568 26 6 6.1562 1.9157 -3.3273 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5140 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5140 0.8898 32 1 1.6767 1.9562 0.8901 33 1 1.6767 1.9564 -0.8898 34 1 3.8840 2.5202 4.2083 35 1 5.1401 2.0444 -1.1681 36 1 3.6062 1.8633 -2.0528 37 1 5.6251 -1.8219 -4.2536 38 1 4.4151 -2.4673 -1.4330 39 1 4.8246 -3.6975 -2.7445 40 1 7.2516 -2.9627 -2.6764 41 1 6.8427 -1.7323 -1.3650 42 1 4.2383 1.2490 -4.0468 43 1 5.1284 -0.5296 -5.5277 44 1 5.8794 1.0422 -5.8943 45 1 7.5814 -0.7589 -5.8066 46 1 7.0896 -1.1423 -4.1397 47 1 8.1945 1.5370 -5.0971 48 1 9.4047 -0.6473 -3.3416 49 1 9.8972 -0.2639 -5.0086 50 1 10.1558 0.9243 -3.7089 51 1 8.2031 2.0969 -2.6816 52 1 7.4528 0.5249 -2.3146 53 1 6.2417 2.7096 -4.0692 54 1 5.7502 2.3255 -2.4024 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123019887.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:46 Heat of formation + Delta-G solvation = 22.383350 kcal Electronic energy + Delta-G solvation = -30671.053626 eV Core-core repulsion = 27030.888748 eV Total energy + Delta-G solvation = -3640.164879 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.96179 -39.36109 -38.17424 -36.77724 -35.30339 -34.36612 -33.30855 -32.02248 -31.46664 -29.06946 -27.39278 -27.00448 -24.69321 -23.57564 -23.22574 -23.12589 -22.50729 -22.10329 -20.69042 -19.76272 -18.78168 -17.59786 -17.38899 -17.26671 -16.41747 -15.98455 -15.82890 -15.70988 -15.45298 -15.14098 -14.94005 -14.75721 -14.45604 -14.32553 -14.19827 -14.06779 -13.95240 -13.45129 -13.34194 -13.03243 -12.87786 -12.79450 -12.73150 -12.44683 -12.37312 -12.32777 -12.27507 -12.13917 -12.04770 -11.88742 -11.71815 -11.61269 -11.24519 -11.22700 -11.00019 -10.89878 -10.68642 -10.63228 -10.08893 -9.18437 -8.73267 -8.14266 -5.62138 1.31826 1.41015 1.54048 1.85226 2.08310 2.43292 3.04213 3.08718 3.33112 3.66231 3.80014 3.88348 3.95503 4.03813 4.10311 4.15924 4.22119 4.26059 4.30809 4.32530 4.41172 4.52103 4.55378 4.55989 4.62457 4.66032 4.67732 4.71457 4.74283 4.80257 4.81100 4.88430 4.96567 5.03071 5.04053 5.11315 5.16370 5.16494 5.22443 5.27184 5.33937 5.38553 5.39554 5.42410 5.48857 5.53776 5.54378 5.71724 5.97134 6.00330 6.19581 6.60331 6.96767 7.52071 7.67544 7.99622 9.05334 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.014760 B = 0.004596 C = 0.004187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.627437 B = 6091.344404 C = 6686.296780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.124 4.124 3 C 0.125 3.875 4 N -0.596 5.596 5 C -0.238 4.238 6 H 0.019 0.981 7 C -0.030 4.030 8 N -0.962 5.962 9 Si 0.965 3.035 10 H -0.274 1.274 11 H -0.312 1.312 12 H -0.244 1.244 13 C 0.127 3.873 14 C 0.483 3.517 15 O -0.552 6.552 16 N -0.580 5.580 17 C 0.093 3.907 18 C -0.220 4.220 19 C -0.192 4.192 20 C 0.140 3.860 21 C -0.116 4.116 22 C -0.143 4.143 23 C -0.080 4.080 24 C -0.146 4.146 25 C -0.111 4.111 26 C -0.155 4.155 27 H 0.044 0.956 28 H 0.074 0.926 29 H 0.059 0.941 30 H 0.050 0.950 31 H 0.019 0.981 32 H 0.036 0.964 33 H 0.077 0.923 34 H 0.262 0.738 35 H 0.092 0.908 36 H 0.104 0.896 37 H 0.167 0.833 38 H 0.106 0.894 39 H 0.102 0.898 40 H 0.115 0.885 41 H 0.051 0.949 42 H 0.090 0.910 43 H 0.079 0.921 44 H 0.100 0.900 45 H 0.078 0.922 46 H 0.078 0.922 47 H 0.081 0.919 48 H 0.038 0.962 49 H 0.066 0.934 50 H 0.049 0.951 51 H 0.052 0.948 52 H 0.030 0.970 53 H 0.101 0.899 54 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.340 -1.504 -25.198 25.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.163 4.163 3 C 0.001 3.999 4 N -0.317 5.317 5 C -0.368 4.368 6 H 0.037 0.963 7 C -0.225 4.225 8 N -0.607 5.607 9 Si 0.794 3.206 10 H -0.202 1.202 11 H -0.242 1.242 12 H -0.168 1.168 13 C -0.002 4.002 14 C 0.271 3.729 15 O -0.429 6.429 16 N -0.313 5.313 17 C -0.011 4.011 18 C -0.257 4.257 19 C -0.231 4.231 20 C 0.038 3.962 21 C -0.153 4.153 22 C -0.180 4.180 23 C -0.098 4.098 24 C -0.204 4.204 25 C -0.149 4.149 26 C -0.193 4.193 27 H 0.063 0.937 28 H 0.093 0.907 29 H 0.078 0.922 30 H 0.068 0.932 31 H 0.038 0.962 32 H 0.054 0.946 33 H 0.095 0.905 34 H 0.070 0.930 35 H 0.109 0.891 36 H 0.122 0.878 37 H 0.183 0.817 38 H 0.124 0.876 39 H 0.121 0.879 40 H 0.133 0.867 41 H 0.070 0.930 42 H 0.107 0.893 43 H 0.097 0.903 44 H 0.119 0.881 45 H 0.097 0.903 46 H 0.096 0.904 47 H 0.099 0.901 48 H 0.057 0.943 49 H 0.085 0.915 50 H 0.068 0.932 51 H 0.071 0.929 52 H 0.049 0.951 53 H 0.119 0.881 54 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.253 -1.869 -24.626 24.800 hybrid contribution 0.017 0.094 1.404 1.408 sum 2.270 -1.774 -23.222 23.400 Atomic orbital electron populations 1.21712 0.94292 1.01958 1.02013 1.21813 0.96039 0.98518 0.99977 1.21537 0.83176 0.95467 0.99734 1.43909 1.01025 1.85405 1.01345 1.18397 1.08111 1.20474 0.89868 0.96297 1.26190 1.01398 1.00105 0.94810 1.69981 1.48091 1.42692 0.99944 0.85577 0.78405 0.78323 0.78286 1.20183 1.24161 1.16770 1.21472 0.98364 0.91766 0.88625 1.22648 0.76088 0.93330 0.80880 1.90470 1.54153 1.47630 1.50679 1.47697 1.62509 1.08289 1.12797 1.21954 1.00992 0.81003 0.97197 1.24015 0.98343 0.98634 1.04751 1.23109 0.93524 1.04520 1.01930 1.21374 0.99512 0.86919 0.88410 1.21767 0.96530 1.01988 0.95034 1.22233 0.94638 0.98937 1.02222 1.21030 0.94419 0.98070 0.96296 1.21814 0.96664 1.00386 1.01518 1.21472 0.96329 0.99234 0.97817 1.22411 0.95422 0.98432 1.03014 0.93676 0.90713 0.92187 0.93158 0.96184 0.94637 0.90492 0.92959 0.89058 0.87822 0.81660 0.87633 0.87934 0.86660 0.93019 0.89265 0.90269 0.88115 0.90327 0.90367 0.90064 0.94277 0.91453 0.93229 0.92915 0.95079 0.88078 0.91527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.50 9.91 71.98 0.71 -3.78 16 2 C -0.12 -5.11 6.05 30.59 0.19 -4.93 16 3 C 0.12 5.35 4.46 86.38 0.39 5.74 16 4 N -0.60 -28.64 1.72 -706.35 -1.21 -29.85 16 5 C -0.24 -14.29 9.65 84.03 0.81 -13.48 16 6 H 0.02 1.34 8.06 -2.91 -0.02 1.32 16 7 C -0.03 -1.84 5.41 84.86 0.46 -1.38 16 8 N -0.96 -63.38 13.97 21.65 0.30 -63.08 16 9 Si 0.97 47.15 24.75 68.60 1.70 48.85 16 10 H -0.27 -12.80 6.60 99.48 0.66 -12.14 16 11 H -0.31 -15.48 7.11 99.48 0.71 -14.77 16 12 H -0.24 -10.73 7.09 99.48 0.71 -10.02 16 13 C 0.13 4.80 4.28 85.63 0.37 5.17 16 14 C 0.48 18.40 7.16 87.66 0.63 19.02 16 15 O -0.55 -26.49 11.38 -3.04 -0.03 -26.52 16 16 N -0.58 -15.91 2.21 -774.07 -1.71 -17.62 16 17 C 0.09 2.34 4.11 44.99 0.18 2.53 16 18 C -0.22 -6.83 9.63 30.59 0.29 -6.54 16 19 C -0.19 -5.63 9.02 30.59 0.28 -5.36 16 20 C 0.14 2.65 2.68 44.99 0.12 2.77 16 21 C -0.12 -1.45 4.91 30.60 0.15 -1.30 16 22 C -0.14 -2.06 4.45 30.59 0.14 -1.92 16 23 C -0.08 -1.32 2.72 -10.80 -0.03 -1.35 16 24 C -0.15 -2.50 9.19 71.98 0.66 -1.84 16 25 C -0.11 -2.52 5.04 30.59 0.15 -2.36 16 26 C -0.16 -3.14 5.19 30.59 0.16 -2.98 16 27 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.05 2.07 7.54 -2.38 -0.02 2.05 16 31 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.04 1.67 2.73 -2.39 -0.01 1.66 16 33 H 0.08 2.68 7.85 -2.39 -0.02 2.66 16 34 H 0.26 16.25 8.31 -92.71 -0.77 15.48 16 35 H 0.09 3.51 5.56 -2.39 -0.01 3.50 16 36 H 0.10 3.07 7.04 -2.39 -0.02 3.05 16 37 H 0.17 2.94 4.97 -2.39 -0.01 2.93 16 38 H 0.11 4.38 4.93 -28.57 -0.14 4.24 16 39 H 0.10 2.60 8.14 -2.38 -0.02 2.58 16 40 H 0.12 2.66 8.14 -2.39 -0.02 2.64 16 41 H 0.05 1.97 7.86 -2.39 -0.02 1.95 16 42 H 0.09 1.48 7.60 -2.39 -0.02 1.46 16 43 H 0.08 0.87 7.16 -2.39 -0.02 0.85 16 44 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.08 1.41 3.48 -2.39 -0.01 1.40 16 47 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 48 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 49 H 0.07 0.91 8.14 -2.38 -0.02 0.90 16 50 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 51 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 52 H 0.03 0.93 7.60 -2.39 -0.02 0.91 16 53 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 54 H 0.07 1.68 3.96 -2.39 -0.01 1.68 16 Total: -1.00 -78.24 387.36 5.38 -72.86 By element: Atomic # 1 Polarization: 26.66 SS G_CDS: 0.69 Total: 27.35 kcal Atomic # 6 Polarization: -17.64 SS G_CDS: 5.66 Total: -11.98 kcal Atomic # 7 Polarization: -107.92 SS G_CDS: -2.62 Total: -110.55 kcal Atomic # 8 Polarization: -26.49 SS G_CDS: -0.03 Total: -26.52 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 1.70 Total: 48.85 kcal Total: -78.24 5.38 -72.86 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123019887.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.244 kcal (2) G-P(sol) polarization free energy of solvation -78.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds