Wall clock time and date at job start Tue Mar 31 2020 15:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47525 * 2 1 4 4 C 1.53004 * 109.47143 * 239.99962 * 2 1 3 5 5 C 1.53004 * 109.47005 * 300.00035 * 4 2 1 6 6 C 1.53002 * 109.47281 * 300.00296 * 5 4 2 7 7 C 1.53005 * 109.47215 * 59.99539 * 6 5 4 8 8 H 1.08994 * 109.46555 * 60.00705 * 7 6 5 9 9 N 1.46502 * 109.46946 * 180.02562 * 7 6 5 10 10 C 1.34781 * 119.99703 * 275.00286 * 9 7 6 11 11 O 1.21281 * 120.00280 * 359.97438 * 10 9 7 12 12 C 1.50696 * 119.99863 * 180.02562 * 10 9 7 13 13 N 1.46497 * 109.47451 * 179.97438 * 12 10 9 14 14 C 1.36942 * 119.99978 * 89.99459 * 13 12 10 15 15 H 1.08001 * 119.99955 * 159.73049 * 14 13 12 16 16 C 1.38816 * 119.99766 * 339.73493 * 14 13 12 17 17 N 1.31615 * 120.00193 * 3.78166 * 16 14 13 18 18 Si 1.86804 * 119.99709 * 183.78004 * 16 14 13 19 19 H 1.48502 * 109.47146 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47006 * 120.00094 * 18 16 14 21 21 H 1.48503 * 109.47234 * 240.00026 * 18 16 14 22 22 C 1.46500 * 120.00210 * 270.00102 * 13 12 10 23 23 C 1.54264 * 110.03251 * 242.90905 * 22 13 12 24 24 C 1.54968 * 104.15934 * 217.14009 * 23 22 13 25 25 C 1.54892 * 102.77953 * 37.88327 * 24 23 22 26 26 C 1.53886 * 110.03315 * 125.69020 * 22 13 12 27 27 C 1.52997 * 109.47253 * 119.99958 * 2 1 3 28 28 H 1.09000 * 109.47743 * 179.97438 * 27 2 1 29 29 C 1.53004 * 109.47049 * 300.00061 * 27 2 1 30 30 H 1.09000 * 109.47280 * 300.00279 * 1 2 3 31 31 H 1.08997 * 109.47525 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.46820 * 60.00019 * 1 2 3 33 33 H 1.08996 * 109.47424 * 59.99940 * 4 2 1 34 34 H 1.09000 * 109.47187 * 180.02562 * 4 2 1 35 35 H 1.09000 * 109.47133 * 180.02562 * 5 4 2 36 36 H 1.08999 * 109.47274 * 59.99821 * 5 4 2 37 37 H 1.09006 * 109.46978 * 299.99967 * 6 5 4 38 38 H 1.08998 * 109.47517 * 179.97438 * 6 5 4 39 39 H 0.96994 * 120.00260 * 95.00133 * 9 7 6 40 40 H 1.09008 * 109.47142 * 299.99983 * 12 10 9 41 41 H 1.09001 * 109.47068 * 59.99590 * 12 10 9 42 42 H 0.96996 * 119.99752 * 174.95049 * 17 16 14 43 43 H 1.08998 * 110.01797 * 4.30313 * 22 13 12 44 44 H 1.09001 * 110.48793 * 335.77850 * 23 22 13 45 45 H 1.08991 * 110.48735 * 98.42633 * 23 22 13 46 46 H 1.09007 * 110.71352 * 279.57441 * 24 23 22 47 47 H 1.08997 * 110.92315 * 156.30069 * 24 23 22 48 48 H 1.08997 * 110.48116 * 203.40861 * 25 24 23 49 49 H 1.09001 * 110.48049 * 80.76337 * 25 24 23 50 50 H 1.08996 * 110.02996 * 238.57122 * 26 22 13 51 51 H 1.09005 * 110.02652 * 359.97438 * 26 22 13 52 52 H 1.08999 * 109.47251 * 60.00029 * 29 27 2 53 53 H 1.08999 * 109.47327 * 179.97438 * 29 27 2 54 54 H 1.08997 * 109.46941 * 299.99475 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5300 -2.1638 -1.2492 6 6 2.0399 -2.8851 0.0001 7 6 1.5299 -2.1637 1.2493 8 1 0.4400 -2.1638 1.2493 9 7 2.0187 -2.8540 2.4455 10 6 1.3422 -3.9110 2.9372 11 8 0.3287 -4.2904 2.3898 12 6 1.8447 -4.6207 4.1680 13 7 0.9409 -5.7255 4.4978 14 6 1.1598 -6.9701 3.9702 15 1 0.7255 -7.8400 4.4403 16 6 1.9401 -7.1135 2.8311 17 7 2.5305 -6.0633 2.3012 18 14 2.1523 -8.7972 2.0503 19 1 1.3921 -9.8050 2.8325 20 1 1.6420 -8.7642 0.6561 21 1 3.5920 -9.1612 2.0419 22 6 -0.1971 -5.4989 5.3921 23 6 -0.0440 -6.3513 6.6687 24 6 -1.4895 -6.8015 6.9996 25 6 -2.0945 -7.0677 5.5988 26 6 -1.5006 -5.9538 4.7122 27 6 2.0400 -0.7212 1.2492 28 1 3.1300 -0.7217 1.2491 29 6 1.5300 0.0001 2.4985 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 -0.8901 33 1 1.6767 -0.2075 -2.1393 34 1 3.1300 -0.7217 -1.2490 35 1 1.8937 -2.6778 -2.1390 36 1 0.4400 -2.1638 -1.2492 37 1 3.1299 -2.8851 0.0001 38 1 1.6762 -3.9126 0.0004 39 1 2.8291 -2.5504 2.8836 40 1 2.8442 -5.0125 3.9789 41 1 1.8809 -3.9200 5.0021 42 1 3.1339 -6.1738 1.5498 43 1 -0.2615 -4.4428 5.6538 44 1 0.5901 -7.2167 6.4758 45 1 0.3650 -5.7511 7.4814 46 1 -2.0333 -6.0070 7.5106 47 1 -1.4860 -7.7123 7.5984 48 1 -3.1812 -6.9903 5.6317 49 1 -1.7918 -8.0488 5.2327 50 1 -2.1976 -5.1185 4.6448 51 1 -1.2863 -6.3427 3.7167 52 1 0.4400 0.0000 2.4985 53 1 1.8929 -0.5140 3.3885 54 1 1.8934 1.0277 2.4985 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156722290.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:26 Heat of formation + Delta-G solvation = -54.368705 kcal Electronic energy + Delta-G solvation = -30075.309042 eV Core-core repulsion = 26431.815945 eV Total energy + Delta-G solvation = -3643.493098 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.99917 -39.68159 -38.63445 -35.83522 -34.84386 -33.65323 -32.74525 -31.24684 -29.33249 -29.04211 -28.15537 -27.82017 -26.45377 -24.43665 -22.93794 -22.11046 -21.35999 -20.97677 -20.78121 -19.45459 -18.27485 -17.40610 -17.21691 -16.98611 -16.31122 -15.98087 -15.85017 -15.41527 -15.28175 -14.93869 -14.78566 -14.61631 -14.30539 -14.14759 -14.03360 -13.83550 -13.37349 -13.18718 -12.96186 -12.90983 -12.79418 -12.59963 -12.47319 -12.43194 -12.17421 -12.12381 -12.04928 -11.87739 -11.79228 -11.73933 -11.68683 -11.58055 -11.28525 -11.24210 -11.16739 -11.11189 -10.82374 -10.64114 -10.03296 -9.43264 -8.59222 -7.73306 -5.13024 1.40630 1.46084 1.51661 2.49298 2.63644 2.92079 3.44058 3.67285 3.70701 3.84538 3.97235 3.98298 4.05124 4.19626 4.28984 4.29616 4.43582 4.48053 4.50650 4.57589 4.66022 4.69338 4.74640 4.77289 4.77741 4.88358 4.91953 4.95069 4.96849 4.98976 5.08808 5.09549 5.11042 5.20207 5.21373 5.21970 5.26788 5.32145 5.32810 5.36866 5.37327 5.47010 5.51773 5.53448 5.59963 5.65961 5.68851 5.69544 5.79165 6.19140 6.44911 7.16741 7.34107 7.96501 8.23949 8.40054 9.27796 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.013361 B = 0.004380 C = 0.003673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.138378 B = 6391.068956 C = 7621.234717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.077 4.077 3 H 0.096 0.904 4 C -0.107 4.107 5 C -0.115 4.115 6 C -0.116 4.116 7 C 0.165 3.835 8 H 0.048 0.952 9 N -0.733 5.733 10 C 0.536 3.464 11 O -0.591 6.591 12 C 0.163 3.837 13 N -0.583 5.583 14 C -0.222 4.222 15 H 0.068 0.932 16 C -0.048 4.048 17 N -0.916 5.916 18 Si 0.954 3.046 19 H -0.273 1.273 20 H -0.312 1.312 21 H -0.290 1.290 22 C 0.167 3.833 23 C -0.129 4.129 24 C -0.110 4.110 25 C -0.116 4.116 26 C -0.124 4.124 27 C -0.084 4.084 28 H 0.081 0.919 29 C -0.142 4.142 30 H 0.059 0.941 31 H 0.035 0.965 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.059 0.941 36 H 0.052 0.948 37 H 0.056 0.944 38 H 0.015 0.985 39 H 0.396 0.604 40 H 0.097 0.903 41 H 0.050 0.950 42 H 0.239 0.761 43 H 0.053 0.947 44 H 0.052 0.948 45 H 0.069 0.931 46 H 0.079 0.921 47 H 0.073 0.927 48 H 0.072 0.928 49 H 0.045 0.955 50 H 0.044 0.956 51 H 0.033 0.967 52 H 0.045 0.955 53 H 0.051 0.949 54 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.485 13.725 1.519 13.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.096 4.096 3 H 0.114 0.886 4 C -0.144 4.144 5 C -0.153 4.153 6 C -0.155 4.155 7 C 0.059 3.941 8 H 0.066 0.934 9 N -0.385 5.385 10 C 0.324 3.676 11 O -0.469 6.469 12 C 0.033 3.967 13 N -0.302 5.302 14 C -0.352 4.352 15 H 0.086 0.914 16 C -0.242 4.242 17 N -0.565 5.565 18 Si 0.786 3.214 19 H -0.198 1.198 20 H -0.241 1.241 21 H -0.217 1.217 22 C 0.060 3.940 23 C -0.168 4.168 24 C -0.148 4.148 25 C -0.154 4.154 26 C -0.163 4.163 27 C -0.103 4.103 28 H 0.099 0.901 29 C -0.199 4.199 30 H 0.078 0.922 31 H 0.054 0.946 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.034 0.966 39 H 0.230 0.770 40 H 0.115 0.885 41 H 0.068 0.932 42 H 0.050 0.950 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.087 0.913 46 H 0.097 0.903 47 H 0.092 0.908 48 H 0.090 0.910 49 H 0.064 0.936 50 H 0.063 0.937 51 H 0.052 0.948 52 H 0.065 0.935 53 H 0.070 0.930 54 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.178 13.406 1.004 13.495 hybrid contribution 0.517 -1.421 -1.014 1.821 sum -0.661 11.984 -0.010 12.002 Atomic orbital electron populations 1.21992 0.95838 1.01015 1.02183 1.21094 0.95584 0.99700 0.93215 0.88606 1.21562 1.00893 0.93786 0.98206 1.21521 1.00333 0.96985 0.96450 1.21751 1.00030 0.97824 0.95931 1.20697 0.97524 0.91541 0.84313 0.93402 1.46024 1.29626 1.32968 1.29903 1.21894 0.81716 0.76773 0.87202 1.90459 1.28834 1.64957 1.62695 1.20745 0.96484 0.88506 0.90963 1.44013 1.27219 1.05897 1.53083 1.19240 1.26443 0.85490 1.04024 0.91425 1.25417 1.02311 0.99253 0.97181 1.69788 1.33075 1.27499 1.26133 0.85368 0.76918 0.81592 0.77522 1.19775 1.24091 1.21667 1.21197 0.86311 0.96551 0.89898 1.22774 0.97154 0.99819 0.97080 1.22406 0.95140 1.01375 0.95845 1.22261 0.99623 0.97604 0.95884 1.22403 0.97185 0.97693 0.99051 1.21355 1.00668 0.92044 0.96259 0.90107 1.21816 1.00826 1.00555 0.96693 0.92156 0.94564 0.91561 0.90341 0.91232 0.92274 0.92917 0.92489 0.96632 0.76986 0.88530 0.93186 0.95044 0.92901 0.92916 0.91272 0.90280 0.90812 0.90952 0.93566 0.93682 0.94807 0.93544 0.93036 0.90593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.33 8.15 71.98 0.59 -2.74 16 2 C -0.08 -1.54 2.72 -10.79 -0.03 -1.57 16 3 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 4 C -0.11 -2.22 5.45 30.60 0.17 -2.05 16 5 C -0.11 -3.25 5.65 30.60 0.17 -3.08 16 6 C -0.12 -4.20 5.49 30.60 0.17 -4.04 16 7 C 0.16 5.60 1.62 44.99 0.07 5.67 16 8 H 0.05 1.94 5.86 -2.39 -0.01 1.92 16 9 N -0.73 -27.57 4.38 -442.52 -1.94 -29.51 16 10 C 0.54 25.47 5.75 87.65 0.50 25.98 16 11 O -0.59 -33.79 15.87 -3.03 -0.05 -33.84 16 12 C 0.16 7.58 5.39 85.63 0.46 8.04 16 13 N -0.58 -28.72 1.98 -678.30 -1.34 -30.06 16 14 C -0.22 -12.05 7.86 84.03 0.66 -11.39 16 15 H 0.07 3.68 7.18 -2.91 -0.02 3.66 16 16 C -0.05 -2.66 5.38 84.86 0.46 -2.21 16 17 N -0.92 -51.75 8.18 21.65 0.18 -51.57 16 18 Si 0.95 47.32 29.56 68.60 2.03 49.35 16 19 H -0.27 -13.01 7.11 99.48 0.71 -12.30 16 20 H -0.31 -16.39 7.11 99.48 0.71 -15.68 16 21 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16 22 C 0.17 7.01 3.41 45.72 0.16 7.16 16 23 C -0.13 -4.52 6.40 31.70 0.20 -4.32 16 24 C -0.11 -3.19 6.91 31.91 0.22 -2.97 16 25 C -0.12 -3.94 6.83 31.67 0.22 -3.72 16 26 C -0.12 -5.24 6.24 31.32 0.20 -5.05 16 27 C -0.08 -2.00 2.07 -10.79 -0.02 -2.02 16 28 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 29 C -0.14 -3.06 8.68 71.98 0.63 -2.44 16 30 H 0.06 1.24 6.43 -2.39 -0.02 1.23 16 31 H 0.04 1.00 4.81 -2.39 -0.01 0.98 16 32 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 33 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.05 1.59 6.43 -2.39 -0.02 1.57 16 37 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 38 H 0.01 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.40 12.70 8.39 -92.71 -0.78 11.92 16 40 H 0.10 4.88 6.22 -2.38 -0.01 4.87 16 41 H 0.05 2.00 7.97 -2.39 -0.02 1.98 16 42 H 0.24 13.66 8.32 -92.71 -0.77 12.89 16 43 H 0.05 2.12 7.86 -2.39 -0.02 2.10 16 44 H 0.05 2.09 6.86 -2.39 -0.02 2.08 16 45 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 46 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 47 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 48 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 49 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 50 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 51 H 0.03 1.75 7.15 -2.38 -0.02 1.74 16 52 H 0.05 1.10 6.43 -2.39 -0.02 1.08 16 53 H 0.05 1.18 7.44 -2.39 -0.02 1.16 16 54 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -68.23 394.77 3.77 -64.46 By element: Atomic # 1 Polarization: 31.82 SS G_CDS: 0.08 Total: 31.90 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: 4.81 Total: -0.73 kcal Atomic # 7 Polarization: -108.03 SS G_CDS: -3.11 Total: -111.14 kcal Atomic # 8 Polarization: -33.79 SS G_CDS: -0.05 Total: -33.84 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 2.03 Total: 49.35 kcal Total: -68.23 3.77 -64.46 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156722290.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.093 kcal (2) G-P(sol) polarization free energy of solvation -68.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds