Wall clock time and date at job start Tue Mar 31 2020 15:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.47382 * 2 1 4 4 C 1.52998 * 109.47452 * 239.99739 * 2 1 3 5 5 C 1.52999 * 109.47452 * 180.02562 * 4 2 1 6 6 C 1.53005 * 109.46732 * 60.00200 * 5 4 2 7 7 C 1.53005 * 109.46931 * 299.99589 * 6 5 4 8 8 C 1.52997 * 109.46813 * 60.00356 * 7 6 5 9 9 H 1.09004 * 109.46927 * 60.00328 * 8 7 6 10 10 N 1.46505 * 109.47083 * 179.97438 * 8 7 6 11 11 C 1.46498 * 119.99698 * 60.00276 * 10 8 7 12 12 C 1.34774 * 119.99934 * 240.00188 * 10 8 7 13 13 O 1.21278 * 120.00468 * 0.02562 * 12 10 8 14 14 C 1.50703 * 119.99667 * 179.97438 * 12 10 8 15 15 N 1.46499 * 109.47118 * 179.97438 * 14 12 10 16 16 C 1.36937 * 120.00241 * 270.00729 * 15 14 12 17 17 H 1.07998 * 120.00638 * 142.10595 * 16 15 14 18 18 C 1.38817 * 119.99680 * 322.10494 * 16 15 14 19 19 N 1.31625 * 119.99880 * 156.12700 * 18 16 15 20 20 Si 1.86800 * 120.00218 * 336.13196 * 18 16 15 21 21 H 1.48494 * 109.47407 * 95.07574 * 20 18 16 22 22 H 1.48503 * 109.47040 * 215.08055 * 20 18 16 23 23 H 1.48501 * 109.46784 * 335.07499 * 20 18 16 24 24 C 1.46499 * 119.99834 * 89.99925 * 15 14 12 25 25 C 1.54270 * 110.06946 * 117.70882 * 24 15 14 26 26 C 1.54884 * 104.19713 * 95.69774 * 25 24 15 27 27 C 1.54880 * 102.74837 * 37.94393 * 26 25 24 28 28 C 1.53875 * 110.03539 * 234.89430 * 24 15 14 29 29 H 1.08997 * 109.47078 * 300.00608 * 1 2 3 30 30 H 1.09009 * 109.46805 * 60.00274 * 1 2 3 31 31 H 1.08993 * 109.47220 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47308 * 59.99801 * 4 2 1 33 33 H 1.09006 * 109.47040 * 300.00470 * 4 2 1 34 34 H 1.08993 * 109.47220 * 300.00014 * 5 4 2 35 35 H 1.08997 * 109.47078 * 179.97438 * 5 4 2 36 36 H 1.09004 * 109.46605 * 180.02562 * 6 5 4 37 37 H 1.08993 * 109.47420 * 59.99937 * 6 5 4 38 38 H 1.08996 * 109.46886 * 300.00588 * 7 6 5 39 39 H 1.09001 * 109.46805 * 180.02562 * 7 6 5 40 40 H 1.09004 * 109.46711 * 269.99827 * 11 10 8 41 41 H 1.09001 * 109.47597 * 29.99800 * 11 10 8 42 42 H 1.09001 * 109.47297 * 150.00201 * 11 10 8 43 43 H 1.09000 * 109.46987 * 60.00256 * 14 12 10 44 44 H 1.08996 * 109.47229 * 300.00201 * 14 12 10 45 45 H 0.96997 * 119.99661 * 180.02562 * 19 18 16 46 46 H 1.09000 * 110.01873 * 356.29413 * 24 15 14 47 47 H 1.09008 * 110.48496 * 214.37655 * 25 24 15 48 48 H 1.09007 * 110.48886 * 337.01617 * 25 24 15 49 49 H 1.08997 * 110.75493 * 279.62299 * 26 25 24 50 50 H 1.09008 * 110.75610 * 156.25750 * 26 25 24 51 51 H 1.09008 * 110.48767 * 203.38095 * 27 26 25 52 52 H 1.08998 * 110.49357 * 80.73581 * 27 26 25 53 53 H 1.08997 * 110.02932 * 359.95622 * 28 24 15 54 54 H 1.09005 * 110.02870 * 121.38685 * 28 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5701 -0.7218 -1.2488 6 6 4.0794 -1.4435 0.0005 7 6 3.5694 -0.7221 1.2497 8 6 2.0395 -0.7215 1.2493 9 1 1.6758 -1.7491 1.2492 10 7 1.5511 -0.0313 2.4457 11 6 1.9055 1.3710 2.6782 12 6 0.7758 -0.6865 3.3323 13 8 0.4828 -1.8475 3.1400 14 6 0.2739 0.0234 4.5633 15 7 -0.5411 -0.8973 5.3598 16 6 -1.8898 -0.9838 5.1390 17 1 -2.3862 -1.9412 5.1968 18 6 -2.6191 0.1592 4.8411 19 7 -3.7562 0.0620 4.1853 20 14 -1.9866 1.8352 5.3706 21 1 -1.2324 2.4557 4.2521 22 1 -3.1339 2.7042 5.7364 23 1 -1.0908 1.6778 6.5446 24 6 0.0868 -1.7254 6.3922 25 6 -0.4867 -1.3678 7.7790 26 6 -1.6079 -2.4117 8.0072 27 6 -1.0035 -3.7011 7.3981 28 6 -0.2419 -3.2090 6.1501 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 1.6768 -0.2076 -2.1392 33 1 1.6767 -1.7490 -1.2492 34 1 3.9338 0.3056 -1.2487 35 1 3.9334 -1.2361 -2.1385 36 1 5.1695 -1.4435 0.0009 37 1 3.7157 -2.4709 0.0003 38 1 3.9332 0.3054 1.2498 39 1 3.9327 -1.2359 2.1397 40 1 2.8322 1.4215 3.2499 41 1 2.0408 1.8751 1.7214 42 1 1.1071 1.8598 3.2367 43 1 -0.3311 0.8804 4.2672 44 1 1.1218 0.3650 5.1569 45 1 -4.2656 0.8607 3.9768 46 1 1.1665 -1.5761 6.3848 47 1 0.2828 -1.4607 8.5455 48 1 -0.9000 -0.3592 7.7724 49 1 -2.5168 -2.1240 7.4788 50 1 -1.8035 -2.5421 9.0716 51 1 -1.7941 -4.3955 7.1134 52 1 -0.3176 -4.1709 8.1030 53 1 -0.8693 -3.3128 5.2648 54 1 0.6783 -3.7797 6.0251 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156731732.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:27 Heat of formation + Delta-G solvation = -47.341563 kcal Electronic energy + Delta-G solvation = -30219.164226 eV Core-core repulsion = 26575.975848 eV Total energy + Delta-G solvation = -3643.188378 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.30151 -39.72485 -38.76334 -35.87714 -35.78671 -33.54522 -33.42560 -31.24586 -29.35193 -29.17820 -28.30345 -27.83830 -26.93481 -24.64502 -23.34853 -22.26457 -21.41963 -20.72086 -20.61780 -20.17883 -18.40445 -18.09051 -17.31002 -17.02188 -16.77763 -16.22703 -15.84434 -15.58320 -15.48068 -15.09907 -15.04686 -14.59145 -14.50644 -14.39747 -14.00413 -13.88748 -13.75106 -13.66220 -13.34901 -13.15185 -13.06584 -12.83001 -12.73823 -12.52999 -12.47246 -12.08591 -12.06129 -11.96534 -11.81807 -11.80071 -11.68974 -11.61537 -11.41625 -11.38912 -11.25291 -11.15991 -11.14503 -10.69920 -10.44700 -9.42670 -8.69649 -8.12667 -5.49093 1.25055 1.41698 1.52523 1.88674 2.14993 2.44746 3.05646 3.35704 3.59009 3.79122 3.90364 3.94135 3.94702 4.06478 4.18099 4.19067 4.24534 4.28716 4.38045 4.43642 4.48542 4.49676 4.52531 4.55430 4.65248 4.69389 4.73710 4.76631 4.81618 4.88531 4.92733 4.93572 4.94626 4.99857 5.06169 5.13720 5.15290 5.19815 5.24304 5.25199 5.27706 5.28504 5.32171 5.41413 5.51506 5.55379 5.57996 5.75900 5.81769 6.00206 6.30818 6.53481 7.01610 7.46881 7.70242 8.08589 9.07800 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.014548 B = 0.004523 C = 0.003959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.147698 B = 6189.114644 C = 7069.970464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.090 4.090 3 H 0.091 0.909 4 C -0.110 4.110 5 C -0.112 4.112 6 C -0.115 4.115 7 C -0.115 4.115 8 C 0.142 3.858 9 H 0.055 0.945 10 N -0.618 5.618 11 C 0.071 3.929 12 C 0.485 3.515 13 O -0.567 6.567 14 C 0.115 3.885 15 N -0.584 5.584 16 C -0.220 4.220 17 H 0.031 0.969 18 C -0.029 4.029 19 N -0.953 5.953 20 Si 0.928 3.072 21 H -0.267 1.267 22 H -0.311 1.311 23 H -0.243 1.243 24 C 0.168 3.832 25 C -0.124 4.124 26 C -0.116 4.116 27 C -0.111 4.111 28 C -0.124 4.124 29 H 0.027 0.973 30 H 0.069 0.931 31 H 0.025 0.975 32 H 0.077 0.923 33 H 0.047 0.953 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.048 0.952 38 H 0.085 0.915 39 H 0.052 0.948 40 H 0.081 0.919 41 H 0.090 0.910 42 H 0.058 0.942 43 H 0.068 0.932 44 H 0.104 0.896 45 H 0.259 0.741 46 H 0.070 0.930 47 H 0.087 0.913 48 H 0.048 0.952 49 H 0.037 0.963 50 H 0.076 0.924 51 H 0.046 0.954 52 H 0.085 0.915 53 H 0.030 0.970 54 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.263 3.611 -4.580 20.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.109 4.109 3 H 0.109 0.891 4 C -0.148 4.148 5 C -0.150 4.150 6 C -0.153 4.153 7 C -0.153 4.153 8 C 0.039 3.961 9 H 0.074 0.926 10 N -0.352 5.352 11 C -0.072 4.072 12 C 0.271 3.729 13 O -0.445 6.445 14 C -0.014 4.014 15 N -0.304 5.304 16 C -0.350 4.350 17 H 0.049 0.951 18 C -0.224 4.224 19 N -0.597 5.597 20 Si 0.756 3.244 21 H -0.194 1.194 22 H -0.240 1.240 23 H -0.166 1.166 24 C 0.063 3.937 25 C -0.163 4.163 26 C -0.153 4.153 27 C -0.148 4.148 28 C -0.163 4.163 29 H 0.046 0.954 30 H 0.088 0.912 31 H 0.045 0.955 32 H 0.096 0.904 33 H 0.065 0.935 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.101 0.899 37 H 0.067 0.933 38 H 0.103 0.897 39 H 0.070 0.930 40 H 0.099 0.901 41 H 0.109 0.891 42 H 0.077 0.923 43 H 0.086 0.914 44 H 0.122 0.878 45 H 0.067 0.933 46 H 0.089 0.911 47 H 0.105 0.895 48 H 0.067 0.933 49 H 0.056 0.944 50 H 0.095 0.905 51 H 0.065 0.935 52 H 0.104 0.896 53 H 0.049 0.951 54 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 18.974 3.060 -4.686 19.782 hybrid contribution -1.086 0.462 -0.148 1.189 sum 17.888 3.522 -4.834 18.862 Atomic orbital electron populations 1.21706 0.96821 1.00213 1.00900 1.21427 0.94145 1.00746 0.94587 0.89073 1.21567 0.96802 0.99910 0.96544 1.21525 0.94000 1.01650 0.97784 1.21512 1.01184 0.98758 0.93853 1.21793 0.92736 1.02244 0.98571 1.21097 0.94835 0.96176 0.84023 0.92622 1.48218 1.51055 1.13346 1.22613 1.21971 1.01403 0.80338 1.03448 1.22683 0.76840 0.87455 0.85882 1.90581 1.57576 1.19302 1.77036 1.21512 0.96005 0.93277 0.90654 1.43969 1.03210 1.47067 1.36131 1.18301 0.83142 0.92025 1.41519 0.95140 1.26074 0.95912 1.01572 0.98806 1.70074 1.18824 1.29827 1.41018 0.86083 0.77354 0.80658 0.80338 1.19400 1.24029 1.16646 1.21272 0.95092 0.89762 0.87599 1.22710 0.98119 0.98608 0.96877 1.22363 0.98029 0.95173 0.99750 1.22247 0.98881 0.97038 0.96674 1.22413 0.99020 0.97091 0.97781 0.95378 0.91178 0.95533 0.90415 0.93451 0.90419 0.90587 0.89851 0.93319 0.89684 0.92961 0.90103 0.89100 0.92313 0.91401 0.87841 0.93257 0.91142 0.89495 0.93307 0.94400 0.90546 0.93518 0.89628 0.95084 0.92477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.42 9.03 71.98 0.65 -3.77 16 2 C -0.09 -2.20 2.09 -10.80 -0.02 -2.22 16 3 H 0.09 1.85 6.67 -2.38 -0.02 1.83 16 4 C -0.11 -2.19 5.20 30.59 0.16 -2.03 16 5 C -0.11 -1.68 5.92 30.60 0.18 -1.50 16 6 C -0.12 -1.98 5.92 30.60 0.18 -1.80 16 7 C -0.12 -2.40 5.20 30.59 0.16 -2.25 16 8 C 0.14 4.08 1.97 44.99 0.09 4.17 16 9 H 0.06 2.08 6.90 -2.39 -0.02 2.06 16 10 N -0.62 -19.77 2.00 -822.58 -1.64 -21.41 16 11 C 0.07 1.63 9.30 127.77 1.19 2.81 16 12 C 0.48 20.53 7.74 87.66 0.68 21.21 16 13 O -0.57 -29.38 15.76 -3.02 -0.05 -29.42 16 14 C 0.11 4.81 3.52 85.63 0.30 5.11 16 15 N -0.58 -27.79 1.45 -678.31 -0.98 -28.78 16 16 C -0.22 -12.64 7.77 84.03 0.65 -11.99 16 17 H 0.03 2.04 6.84 -2.91 -0.02 2.02 16 18 C -0.03 -1.69 5.27 84.86 0.45 -1.24 16 19 N -0.95 -61.18 13.97 21.65 0.30 -60.88 16 20 Si 0.93 44.17 25.19 68.60 1.73 45.90 16 21 H -0.27 -11.64 6.64 99.48 0.66 -10.98 16 22 H -0.31 -15.36 7.11 99.48 0.71 -14.66 16 23 H -0.24 -10.61 7.05 99.48 0.70 -9.91 16 24 C 0.17 6.78 3.47 45.72 0.16 6.94 16 25 C -0.12 -4.47 6.16 31.67 0.20 -4.27 16 26 C -0.12 -4.23 6.56 31.88 0.21 -4.02 16 27 C -0.11 -3.85 6.83 31.66 0.22 -3.63 16 28 C -0.12 -5.08 6.15 31.32 0.19 -4.89 16 29 H 0.03 1.04 7.60 -2.39 -0.02 1.02 16 30 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 31 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 34 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 37 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.08 1.41 7.67 -2.39 -0.02 1.39 16 39 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.09 1.65 6.43 -2.39 -0.02 1.63 16 42 H 0.06 1.51 6.44 -2.39 -0.02 1.49 16 43 H 0.07 3.02 2.68 -2.39 -0.01 3.01 16 44 H 0.10 3.48 7.93 -2.39 -0.02 3.46 16 45 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 46 H 0.07 2.50 7.86 -2.39 -0.02 2.49 16 47 H 0.09 2.46 8.14 -2.38 -0.02 2.44 16 48 H 0.05 1.96 7.99 -2.38 -0.02 1.94 16 49 H 0.04 1.70 7.16 -2.39 -0.02 1.68 16 50 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 51 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 52 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 53 H 0.03 1.58 6.70 -2.39 -0.02 1.56 16 54 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 Total: -1.00 -76.16 396.61 5.79 -70.38 By element: Atomic # 1 Polarization: 26.79 SS G_CDS: 0.79 Total: 27.58 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: 5.64 Total: -3.37 kcal Atomic # 7 Polarization: -108.74 SS G_CDS: -2.32 Total: -111.07 kcal Atomic # 8 Polarization: -29.38 SS G_CDS: -0.05 Total: -29.42 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 1.73 Total: 45.90 kcal Total: -76.16 5.79 -70.38 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156731732.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.037 kcal (2) G-P(sol) polarization free energy of solvation -76.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds