Wall clock time and date at job start Tue Mar 31 2020 15:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47615 * 2 1 4 4 C 1.53006 * 109.46745 * 119.99646 * 2 1 3 5 5 C 1.53005 * 109.46992 * 179.97438 * 4 2 1 6 6 C 1.52996 * 109.47180 * 300.00043 * 5 4 2 7 7 C 1.53001 * 109.46860 * 60.00132 * 6 5 4 8 8 C 1.52996 * 109.47066 * 299.99466 * 7 6 5 9 9 H 1.09000 * 109.46953 * 179.97438 * 8 7 6 10 10 N 1.46496 * 109.47288 * 300.00120 * 8 7 6 11 11 C 1.46493 * 119.99997 * 7.17544 * 10 8 7 12 12 C 1.34776 * 119.99658 * 187.16868 * 10 8 7 13 13 O 1.21281 * 120.00279 * 6.59557 * 12 10 8 14 14 C 1.50706 * 119.99639 * 186.59329 * 12 10 8 15 15 N 1.46503 * 109.47146 * 180.02562 * 14 12 10 16 16 C 1.36931 * 120.00015 * 263.35377 * 15 14 12 17 17 H 1.08000 * 120.00391 * 139.98621 * 16 15 14 18 18 C 1.38810 * 119.99633 * 319.97945 * 16 15 14 19 19 N 1.31616 * 120.00468 * 355.67653 * 18 16 15 20 20 Si 1.86807 * 119.99690 * 175.67368 * 18 16 15 21 21 H 1.48503 * 109.47233 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47108 * 120.00152 * 20 18 16 23 23 H 1.48497 * 109.47157 * 239.99821 * 20 18 16 24 24 C 1.46502 * 120.00058 * 83.34664 * 15 14 12 25 25 C 1.54268 * 110.03648 * 237.91204 * 24 15 14 26 26 C 1.54963 * 104.16141 * 217.13896 * 25 24 15 27 27 C 1.54895 * 102.77756 * 37.88129 * 26 25 24 28 28 C 1.53873 * 110.03300 * 120.69097 * 24 15 14 29 29 H 1.08994 * 109.47365 * 189.39793 * 1 2 3 30 30 H 1.09001 * 109.47372 * 309.40582 * 1 2 3 31 31 H 1.09004 * 109.46817 * 69.39966 * 1 2 3 32 32 H 1.09004 * 109.47196 * 60.00129 * 4 2 1 33 33 H 1.09003 * 109.47395 * 300.00031 * 4 2 1 34 34 H 1.09004 * 109.46830 * 179.97438 * 5 4 2 35 35 H 1.09004 * 109.46956 * 60.00091 * 5 4 2 36 36 H 1.08996 * 109.46874 * 179.97438 * 6 5 4 37 37 H 1.08995 * 109.47432 * 299.99746 * 6 5 4 38 38 H 1.09001 * 109.46984 * 60.00162 * 7 6 5 39 39 H 1.09004 * 109.46558 * 179.97438 * 7 6 5 40 40 H 1.08997 * 109.47610 * 93.09813 * 11 10 8 41 41 H 1.09006 * 109.46846 * 213.09781 * 11 10 8 42 42 H 1.09001 * 109.47349 * 333.09694 * 11 10 8 43 43 H 1.09006 * 109.47076 * 299.99637 * 14 12 10 44 44 H 1.08998 * 109.47336 * 60.00017 * 14 12 10 45 45 H 0.96997 * 120.00053 * 179.97438 * 19 18 16 46 46 H 1.09011 * 110.01796 * 359.30245 * 24 15 14 47 47 H 1.08999 * 110.48069 * 335.78338 * 25 24 15 48 48 H 1.08995 * 110.48427 * 98.42765 * 25 24 15 49 49 H 1.09002 * 110.71632 * 279.57357 * 26 25 24 50 50 H 1.08996 * 110.92534 * 156.29152 * 26 25 24 51 51 H 1.08996 * 110.48963 * 203.40425 * 27 26 25 52 52 H 1.09006 * 110.59406 * 80.82339 * 27 26 25 53 53 H 1.08997 * 110.03873 * 238.57422 * 28 24 15 54 54 H 1.09002 * 110.02994 * 0.02562 * 28 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 3.5699 -0.7218 1.2491 6 6 4.0795 -1.4435 -0.0001 7 6 3.5695 -0.7222 -1.2493 8 6 2.0396 -0.7217 -1.2491 9 1 1.6763 -0.2075 -2.1389 10 7 1.5508 -2.1027 -1.2488 11 6 2.4930 -3.2132 -1.0903 12 6 0.2342 -2.3515 -1.3943 13 8 -0.5305 -1.4441 -1.6446 14 6 -0.2878 -3.7575 -1.2458 15 7 -1.7387 -3.7637 -1.4490 16 6 -2.5812 -3.7204 -0.3704 17 1 -3.4775 -3.1190 -0.4090 18 6 -2.2834 -4.4496 0.7726 19 7 -1.2376 -5.2485 0.7898 20 14 -3.3670 -4.2968 2.2866 21 1 -4.4702 -3.3415 2.0115 22 1 -3.9366 -5.6261 2.6238 23 1 -2.5560 -3.8019 3.4279 24 6 -2.2881 -3.8162 -2.8060 25 6 -3.1986 -2.5960 -3.0552 26 6 -4.3558 -3.1568 -3.9200 27 6 -4.5887 -4.5619 -3.3112 28 6 -3.1713 -5.0656 -2.9692 29 1 -0.3634 -1.0138 0.1678 30 1 -0.3634 0.6524 0.7940 31 1 -0.3633 0.3616 -0.9620 32 1 1.6765 -1.7489 1.2494 33 1 1.6765 -0.2073 2.1393 34 1 3.9332 -1.2352 2.1394 35 1 3.9337 0.3058 1.2488 36 1 5.1694 -1.4435 -0.0004 37 1 3.7158 -2.4710 0.0002 38 1 3.9333 0.3053 -1.2495 39 1 3.9329 -1.2362 -2.1393 40 1 2.5640 -3.4819 -0.0364 41 1 2.1412 -4.0725 -1.6614 42 1 3.4748 -2.9116 -1.4553 43 1 0.1853 -4.4009 -1.9877 44 1 -0.0590 -4.1264 -0.2460 45 1 -1.0294 -5.7577 1.5886 46 1 -1.4787 -3.8332 -3.5359 47 1 -3.5816 -2.2070 -2.1117 48 1 -2.6574 -1.8206 -3.5971 49 1 -4.0542 -3.2336 -4.9646 50 1 -5.2493 -2.5403 -3.8217 51 1 -5.0618 -5.2198 -4.0401 52 1 -5.1971 -4.4930 -2.4094 53 1 -2.7910 -5.6887 -3.7787 54 1 -3.1914 -5.6327 -2.0385 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156731877.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:31 Heat of formation + Delta-G solvation = -3.351259 kcal Electronic energy + Delta-G solvation = -30904.106079 eV Core-core repulsion = 27262.825264 eV Total energy + Delta-G solvation = -3641.280815 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.73234 -39.50050 -38.46374 -35.87771 -35.41299 -33.56333 -32.86329 -31.35186 -29.31354 -28.88492 -28.33317 -27.96233 -26.41745 -24.59468 -23.00907 -22.26091 -21.42530 -21.10802 -20.70775 -19.47614 -18.18465 -17.66449 -17.35304 -17.12840 -16.40576 -16.23114 -15.93925 -15.50978 -15.35605 -14.94451 -14.84988 -14.69193 -14.31548 -14.07089 -13.97408 -13.94247 -13.36588 -13.11136 -12.97286 -12.95074 -12.86891 -12.73247 -12.64752 -12.51176 -12.35443 -12.19658 -12.11592 -11.91438 -11.78367 -11.73615 -11.71765 -11.44743 -11.22389 -11.14521 -11.04978 -10.98801 -10.80586 -10.52548 -10.12397 -9.12802 -8.39011 -7.74441 -5.44363 1.40141 1.44079 1.52332 2.14292 2.36106 2.53005 3.31754 3.66204 3.78154 3.80753 3.90258 4.00081 4.03885 4.22442 4.26495 4.31856 4.34976 4.44955 4.54090 4.57438 4.60682 4.65364 4.67386 4.76287 4.77759 4.81274 4.86855 4.93203 4.94203 4.98183 4.99148 5.01598 5.03507 5.10936 5.18336 5.23440 5.24675 5.28758 5.34511 5.34669 5.42365 5.45915 5.51861 5.56395 5.60396 5.64160 5.69242 5.69334 5.87146 6.04768 6.56292 6.76532 7.22167 7.70904 7.94629 8.42645 9.17847 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.013031 B = 0.005148 C = 0.004368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.212937 B = 5437.517074 C = 6409.100199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.093 4.093 3 H 0.084 0.916 4 C -0.109 4.109 5 C -0.109 4.109 6 C -0.156 4.156 7 C -0.114 4.114 8 C 0.152 3.848 9 H 0.052 0.948 10 N -0.614 5.614 11 C 0.074 3.926 12 C 0.476 3.524 13 O -0.551 6.551 14 C 0.125 3.875 15 N -0.569 5.569 16 C -0.224 4.224 17 H 0.042 0.958 18 C -0.032 4.032 19 N -0.917 5.917 20 Si 0.946 3.054 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.293 1.293 24 C 0.172 3.828 25 C -0.117 4.117 26 C -0.113 4.113 27 C -0.111 4.111 28 C -0.126 4.126 29 H 0.037 0.963 30 H 0.021 0.979 31 H 0.052 0.948 32 H 0.037 0.963 33 H 0.048 0.952 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.081 0.919 40 H 0.053 0.947 41 H 0.060 0.940 42 H 0.111 0.889 43 H 0.050 0.950 44 H 0.120 0.880 45 H 0.252 0.748 46 H 0.046 0.954 47 H 0.039 0.961 48 H 0.042 0.958 49 H 0.077 0.923 50 H 0.065 0.935 51 H 0.078 0.922 52 H 0.045 0.955 53 H 0.061 0.939 54 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.151 5.168 -5.163 13.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.112 4.112 3 H 0.102 0.898 4 C -0.146 4.146 5 C -0.146 4.146 6 C -0.193 4.193 7 C -0.151 4.151 8 C 0.049 3.951 9 H 0.070 0.930 10 N -0.350 5.350 11 C -0.068 4.068 12 C 0.264 3.736 13 O -0.429 6.429 14 C -0.005 4.005 15 N -0.287 5.287 16 C -0.355 4.355 17 H 0.059 0.941 18 C -0.228 4.228 19 N -0.564 5.564 20 Si 0.776 3.224 21 H -0.205 1.205 22 H -0.211 1.211 23 H -0.220 1.220 24 C 0.065 3.935 25 C -0.156 4.156 26 C -0.151 4.151 27 C -0.149 4.149 28 C -0.165 4.165 29 H 0.056 0.944 30 H 0.040 0.960 31 H 0.071 0.929 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.102 0.898 37 H 0.111 0.889 38 H 0.107 0.893 39 H 0.099 0.901 40 H 0.072 0.928 41 H 0.078 0.922 42 H 0.129 0.871 43 H 0.068 0.932 44 H 0.137 0.863 45 H 0.062 0.938 46 H 0.064 0.936 47 H 0.058 0.942 48 H 0.061 0.939 49 H 0.096 0.904 50 H 0.084 0.916 51 H 0.096 0.904 52 H 0.064 0.936 53 H 0.079 0.921 54 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 10.778 5.519 -5.174 13.168 hybrid contribution -0.901 0.141 1.292 1.582 sum 9.877 5.660 -3.882 12.027 Atomic orbital electron populations 1.22148 0.96138 1.00459 0.99561 1.21518 0.94582 0.99517 0.95580 0.89826 1.21487 0.97248 0.99369 0.96542 1.21455 0.93329 1.01236 0.98575 1.22451 1.01414 1.02045 0.93367 1.21745 0.91420 1.02698 0.99253 1.21013 0.95386 0.82355 0.96342 0.92990 1.48075 1.06588 1.06727 1.73613 1.22293 0.94652 0.88875 1.00992 1.22790 0.81462 0.93755 0.75546 1.90600 1.57609 1.46949 1.47719 1.21188 0.84859 0.89734 1.04746 1.43599 1.00202 1.83846 1.01040 1.18937 1.03714 1.19425 0.93440 0.94070 1.25730 0.99170 0.96554 1.01331 1.69681 1.28334 1.29783 1.28575 0.85520 0.79115 0.77167 0.80622 1.20477 1.21145 1.21965 1.21143 0.93898 0.92987 0.85451 1.22545 0.96908 0.97815 0.98372 1.22432 0.97617 0.96091 0.98970 1.22207 0.96307 0.96707 0.99686 1.22459 0.95874 0.98138 1.00036 0.94450 0.96009 0.92941 0.94455 0.93335 0.91781 0.91239 0.89816 0.88873 0.89346 0.90087 0.92838 0.92177 0.87128 0.93168 0.86276 0.93785 0.93582 0.94227 0.93909 0.90405 0.91603 0.90362 0.93615 0.92068 0.93620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.02 7.30 71.98 0.53 -4.50 16 2 C -0.09 -2.83 2.54 -10.79 -0.03 -2.86 16 3 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 4 C -0.11 -3.16 5.03 30.60 0.15 -3.01 16 5 C -0.11 -2.27 5.92 30.59 0.18 -2.08 16 6 C -0.16 -2.82 5.14 30.59 0.16 -2.66 16 7 C -0.11 -2.17 4.93 30.59 0.15 -2.02 16 8 C 0.15 4.37 2.61 44.99 0.12 4.48 16 9 H 0.05 1.66 8.04 -2.39 -0.02 1.65 16 10 N -0.61 -20.24 2.22 -823.78 -1.83 -22.07 16 11 C 0.07 1.92 7.87 127.77 1.01 2.93 16 12 C 0.48 20.36 6.05 87.66 0.53 20.89 16 13 O -0.55 -26.48 11.55 -3.03 -0.04 -26.52 16 14 C 0.12 5.80 4.36 85.63 0.37 6.17 16 15 N -0.57 -28.39 1.90 -678.28 -1.29 -29.68 16 16 C -0.22 -12.33 8.04 84.03 0.68 -11.66 16 17 H 0.04 2.41 6.57 -2.91 -0.02 2.39 16 18 C -0.03 -1.77 5.27 84.86 0.45 -1.32 16 19 N -0.92 -50.58 10.76 21.65 0.23 -50.34 16 20 Si 0.95 45.56 29.56 68.60 2.03 47.59 16 21 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 22 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 23 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 24 C 0.17 7.50 3.34 45.72 0.15 7.66 16 25 C -0.12 -4.86 6.42 31.70 0.20 -4.66 16 26 C -0.11 -3.70 6.91 31.91 0.22 -3.48 16 27 C -0.11 -3.81 6.83 31.67 0.22 -3.59 16 28 C -0.13 -5.03 6.27 31.32 0.20 -4.84 16 29 H 0.04 1.79 5.31 -2.39 -0.01 1.78 16 30 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.05 2.25 6.59 -2.38 -0.02 2.23 16 32 H 0.04 1.31 7.28 -2.39 -0.02 1.30 16 33 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 35 H 0.07 1.26 8.14 -2.39 -0.02 1.25 16 36 H 0.08 1.13 8.14 -2.39 -0.02 1.12 16 37 H 0.09 1.85 3.21 -2.82 -0.01 1.84 16 38 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.08 1.35 7.26 -2.38 -0.02 1.33 16 40 H 0.05 1.45 6.71 -2.39 -0.02 1.43 16 41 H 0.06 1.62 6.63 -2.38 -0.02 1.61 16 42 H 0.11 2.08 4.67 -2.39 -0.01 2.06 16 43 H 0.05 2.20 7.17 -2.38 -0.02 2.18 16 44 H 0.12 6.19 5.13 -2.39 -0.01 6.17 16 45 H 0.25 13.50 8.31 -92.71 -0.77 12.73 16 46 H 0.05 1.95 7.92 -2.38 -0.02 1.93 16 47 H 0.04 1.90 6.33 -2.39 -0.02 1.89 16 48 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 49 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 50 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 51 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 52 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 53 H 0.06 2.15 8.14 -2.39 -0.02 2.14 16 54 H 0.04 2.16 7.34 -2.39 -0.02 2.15 16 Total: -1.00 -63.75 382.47 5.25 -58.50 By element: Atomic # 1 Polarization: 26.20 SS G_CDS: 0.86 Total: 27.07 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: 5.28 Total: -4.55 kcal Atomic # 7 Polarization: -99.21 SS G_CDS: -2.89 Total: -102.09 kcal Atomic # 8 Polarization: -26.48 SS G_CDS: -0.04 Total: -26.52 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -63.75 5.25 -58.50 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156731877.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.145 kcal (2) G-P(sol) polarization free energy of solvation -63.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds