Wall clock time and date at job start Tue Mar 31 2020 15:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.47012 * 2 1 4 4 C 1.52997 * 109.46922 * 239.99936 * 2 1 3 5 5 C 1.53002 * 109.47015 * 180.02562 * 4 2 1 6 6 C 1.52991 * 109.47355 * 59.99942 * 5 4 2 7 7 C 1.53007 * 109.47084 * 300.00053 * 6 5 4 8 8 H 1.09005 * 109.46925 * 179.97438 * 7 6 5 9 9 N 1.46497 * 109.47045 * 299.99819 * 7 6 5 10 10 C 1.34774 * 120.00300 * 275.00228 * 9 7 6 11 11 O 1.21288 * 119.99895 * 359.72166 * 10 9 7 12 12 C 1.50697 * 120.00230 * 179.97438 * 10 9 7 13 13 N 1.46502 * 109.47056 * 179.72086 * 12 10 9 14 14 C 1.36936 * 119.99720 * 264.02702 * 13 12 10 15 15 H 1.08002 * 119.99358 * 196.22909 * 14 13 12 16 16 C 1.38803 * 120.00399 * 16.23630 * 14 13 12 17 17 N 1.31625 * 120.00027 * 22.11810 * 16 14 13 18 18 Si 1.86802 * 120.00181 * 202.11736 * 16 14 13 19 19 H 1.48499 * 109.46837 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.47065 * 119.99942 * 18 16 14 21 21 H 1.48492 * 109.47297 * 239.99985 * 18 16 14 22 22 C 1.46501 * 119.99931 * 84.03513 * 13 12 10 23 23 C 1.54263 * 110.02988 * 237.16503 * 22 13 12 24 24 C 1.54885 * 104.19325 * 217.10382 * 23 22 13 25 25 C 1.54889 * 102.75171 * 37.94060 * 24 23 22 26 26 C 1.53874 * 110.03442 * 119.99672 * 22 13 12 27 27 C 1.52999 * 109.47121 * 60.00317 * 7 6 5 28 28 H 1.08998 * 109.47529 * 59.99459 * 27 7 6 29 29 C 1.52997 * 109.47068 * 180.02562 * 27 7 6 30 30 H 1.08998 * 109.47012 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46546 * 300.00033 * 1 2 3 32 32 H 1.08997 * 109.46759 * 59.99624 * 1 2 3 33 33 H 1.08993 * 109.47170 * 60.00129 * 4 2 1 34 34 H 1.09008 * 109.47195 * 299.99880 * 4 2 1 35 35 H 1.08996 * 109.46993 * 299.99492 * 5 4 2 36 36 H 1.09001 * 109.47084 * 179.97438 * 5 4 2 37 37 H 1.09000 * 109.47359 * 179.97438 * 6 5 4 38 38 H 1.09005 * 109.47496 * 59.99694 * 6 5 4 39 39 H 0.96998 * 119.99757 * 94.99881 * 9 7 6 40 40 H 1.08993 * 109.47019 * 299.72262 * 12 10 9 41 41 H 1.09003 * 109.47063 * 59.72245 * 12 10 9 42 42 H 0.96997 * 119.99630 * 180.02562 * 17 16 14 43 43 H 1.09004 * 110.01319 * 358.60608 * 22 13 12 44 44 H 1.08998 * 110.48806 * 335.77650 * 23 22 13 45 45 H 1.09003 * 110.48694 * 98.42569 * 23 22 13 46 46 H 1.09007 * 110.75529 * 279.62482 * 24 23 22 47 47 H 1.09000 * 110.91756 * 156.33087 * 24 23 22 48 48 H 1.08999 * 110.48549 * 203.37701 * 25 24 23 49 49 H 1.08996 * 110.59521 * 80.79038 * 25 24 23 50 50 H 1.08999 * 110.03026 * 238.56931 * 26 22 13 51 51 H 1.08997 * 110.03117 * 359.94819 * 26 22 13 52 52 H 1.09008 * 109.47195 * 59.99914 * 29 27 7 53 53 H 1.09000 * 109.47016 * 179.97438 * 29 27 7 54 54 H 1.08993 * 109.47170 * 299.99664 * 29 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5700 -0.7218 -1.2489 6 6 4.0795 -1.4434 0.0002 7 6 3.5696 -0.7221 1.2495 8 1 3.9322 -1.2365 2.1395 9 7 4.0584 0.6589 1.2498 10 6 5.2804 0.9412 1.7433 11 8 5.9733 0.0526 2.1918 12 6 5.7835 2.3617 1.7430 13 7 7.1237 2.4052 2.3331 14 6 7.2787 2.7161 3.6577 15 1 8.2487 3.0051 4.0345 16 6 6.1893 2.6596 4.5160 17 7 5.1453 1.9203 4.2066 18 14 6.2050 3.6329 6.1104 19 1 7.4845 4.3782 6.2228 20 1 5.0716 4.5925 6.1157 21 1 6.0710 2.7023 7.2598 22 6 8.2979 2.1164 1.5061 23 6 9.0997 0.9484 2.1166 24 6 10.5792 1.3289 1.8608 25 6 10.5815 2.8617 2.0835 26 6 9.2400 3.3328 1.4851 27 6 2.0396 -0.7216 1.2493 28 1 1.6759 -1.7491 1.2491 29 6 1.5296 0.0002 2.4982 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.6767 -0.2075 -2.1391 34 1 1.6767 -1.7490 -1.2492 35 1 3.9337 0.3057 -1.2488 36 1 3.9333 -1.2361 -2.1387 37 1 5.1695 -1.4442 0.0002 38 1 3.7158 -2.4710 0.0001 39 1 3.5026 1.3702 0.8947 40 1 5.8252 2.7321 0.7188 41 1 5.1084 2.9863 2.3280 42 1 4.3839 1.8812 4.8062 43 1 7.9874 1.8670 0.4915 44 1 8.9055 0.8703 3.1863 45 1 8.8540 0.0130 1.6139 46 1 10.8691 1.0866 0.8384 47 1 11.2373 0.8339 2.5749 48 1 11.4171 3.3224 1.5566 49 1 10.6274 3.0945 3.1473 50 1 9.3874 3.6732 0.4601 51 1 8.8231 4.1384 2.0894 52 1 1.8933 1.0278 2.4979 53 1 0.4396 0.0009 2.4978 54 1 1.8926 -0.5134 3.3884 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000247249954.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:30 Heat of formation + Delta-G solvation = -56.789982 kcal Electronic energy + Delta-G solvation = -30133.460029 eV Core-core repulsion = 26489.861937 eV Total energy + Delta-G solvation = -3643.598092 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.06847 -39.60849 -38.51305 -35.80923 -34.57762 -33.85720 -32.79736 -31.71695 -29.33058 -29.05989 -28.09373 -27.69373 -26.33176 -24.42457 -22.67564 -21.94300 -21.42268 -21.27040 -20.73308 -19.65134 -18.33488 -17.50614 -17.28900 -16.57416 -16.27283 -15.99332 -15.84400 -15.58211 -15.13857 -15.02288 -14.80080 -14.70785 -14.21415 -14.11969 -14.02897 -13.88590 -13.27592 -13.09285 -12.92036 -12.80817 -12.67444 -12.66876 -12.60562 -12.39502 -12.28078 -12.21671 -12.07895 -11.89972 -11.79735 -11.73177 -11.67884 -11.61622 -11.33951 -11.29727 -11.21135 -10.92167 -10.77755 -10.55832 -10.08526 -9.45321 -8.63700 -7.76934 -5.06872 1.44935 1.49195 1.57280 2.53240 2.59500 2.88254 3.37134 3.65270 3.75637 3.83069 3.86804 3.98785 4.02686 4.17806 4.27010 4.30392 4.45774 4.52769 4.57922 4.64596 4.66633 4.70215 4.73717 4.77406 4.81545 4.88304 4.93663 4.94220 4.97690 4.98631 5.05419 5.08764 5.10960 5.18277 5.19447 5.22340 5.24807 5.30395 5.32526 5.32623 5.36990 5.47235 5.50878 5.56165 5.58123 5.66048 5.66543 5.72809 5.79748 6.15052 6.41366 7.12376 7.29252 7.94697 8.19735 8.40460 9.29157 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.013116 B = 0.004542 C = 0.003654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.297903 B = 6163.694909 C = 7661.446221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.083 4.083 3 H 0.063 0.937 4 C -0.105 4.105 5 C -0.110 4.110 6 C -0.122 4.122 7 C 0.159 3.841 8 H 0.031 0.969 9 N -0.723 5.723 10 C 0.528 3.472 11 O -0.577 6.577 12 C 0.160 3.840 13 N -0.577 5.577 14 C -0.232 4.232 15 H 0.067 0.933 16 C -0.051 4.051 17 N -0.910 5.910 18 Si 0.952 3.048 19 H -0.273 1.273 20 H -0.290 1.290 21 H -0.309 1.309 22 C 0.168 3.832 23 C -0.119 4.119 24 C -0.115 4.115 25 C -0.112 4.112 26 C -0.128 4.128 27 C -0.080 4.080 28 H 0.085 0.915 29 C -0.138 4.138 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.053 0.947 36 H 0.068 0.932 37 H 0.030 0.970 38 H 0.073 0.927 39 H 0.395 0.605 40 H 0.060 0.940 41 H 0.081 0.919 42 H 0.240 0.760 43 H 0.051 0.949 44 H 0.035 0.965 45 H 0.032 0.968 46 H 0.078 0.922 47 H 0.061 0.939 48 H 0.083 0.917 49 H 0.046 0.954 50 H 0.073 0.927 51 H 0.055 0.945 52 H 0.043 0.957 53 H 0.075 0.925 54 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.229 -1.757 -13.439 14.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.101 4.101 3 H 0.082 0.918 4 C -0.142 4.142 5 C -0.147 4.147 6 C -0.160 4.160 7 C 0.053 3.947 8 H 0.049 0.951 9 N -0.377 5.377 10 C 0.315 3.685 11 O -0.455 6.455 12 C 0.030 3.970 13 N -0.296 5.296 14 C -0.362 4.362 15 H 0.085 0.915 16 C -0.246 4.246 17 N -0.557 5.557 18 Si 0.783 3.217 19 H -0.198 1.198 20 H -0.216 1.216 21 H -0.238 1.238 22 C 0.061 3.939 23 C -0.159 4.159 24 C -0.153 4.153 25 C -0.150 4.150 26 C -0.167 4.167 27 C -0.098 4.098 28 H 0.103 0.897 29 C -0.195 4.195 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.088 0.912 35 H 0.072 0.928 36 H 0.086 0.914 37 H 0.049 0.951 38 H 0.092 0.908 39 H 0.230 0.770 40 H 0.078 0.922 41 H 0.099 0.901 42 H 0.049 0.951 43 H 0.070 0.930 44 H 0.054 0.946 45 H 0.051 0.949 46 H 0.097 0.903 47 H 0.080 0.920 48 H 0.101 0.899 49 H 0.065 0.935 50 H 0.092 0.908 51 H 0.074 0.926 52 H 0.062 0.938 53 H 0.094 0.906 54 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -5.829 -2.374 -13.013 14.455 hybrid contribution -0.312 0.274 1.668 1.719 sum -6.142 -2.100 -11.344 13.070 Atomic orbital electron populations 1.21844 0.93816 1.02275 1.02119 1.21119 0.96474 0.99011 0.93538 0.91840 1.21558 0.94078 1.01132 0.97450 1.21425 0.96618 1.00287 0.96391 1.21820 0.99090 0.99545 0.95585 1.20644 0.94054 0.83575 0.96402 0.95109 1.45994 1.17978 1.08605 1.65159 1.21949 0.80509 0.92483 0.73540 1.90479 1.58763 1.49960 1.46289 1.20617 0.88100 0.92330 0.95948 1.44186 1.00213 1.78499 1.06686 1.19200 0.95204 1.36113 0.85709 0.91475 1.25340 0.98528 1.00693 1.00078 1.70130 1.08024 1.39491 1.38075 0.85428 0.77365 0.78409 0.80516 1.19759 1.21648 1.23781 1.21159 0.87214 0.92867 0.92637 1.22562 0.95657 0.97815 0.99818 1.22429 0.95098 0.96253 1.01508 1.22232 0.97289 0.95430 1.00057 1.22526 0.95325 0.98232 1.00601 1.21333 0.92251 1.00679 0.95586 0.89703 1.21759 1.01151 1.00109 0.96523 0.92124 0.92612 0.91672 0.90461 0.91236 0.92788 0.91377 0.95100 0.90807 0.77018 0.92248 0.90099 0.95076 0.93030 0.94625 0.94947 0.90344 0.91996 0.89868 0.93532 0.90818 0.92623 0.93757 0.90632 0.95358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 8.84 71.98 0.64 -1.64 16 2 C -0.08 -1.64 2.08 -10.79 -0.02 -1.66 16 3 H 0.06 1.36 6.51 -2.39 -0.02 1.34 16 4 C -0.10 -1.87 5.20 30.59 0.16 -1.71 16 5 C -0.11 -2.49 5.76 30.59 0.18 -2.31 16 6 C -0.12 -3.57 5.60 30.59 0.17 -3.40 16 7 C 0.16 5.34 2.23 44.99 0.10 5.44 16 8 H 0.03 1.33 7.58 -2.38 -0.02 1.31 16 9 N -0.72 -26.48 3.54 -442.52 -1.57 -28.04 16 10 C 0.53 24.66 6.01 87.66 0.53 25.18 16 11 O -0.58 -32.53 15.80 -3.05 -0.05 -32.57 16 12 C 0.16 7.37 5.32 85.63 0.46 7.83 16 13 N -0.58 -28.33 1.97 -678.33 -1.34 -29.67 16 14 C -0.23 -12.58 7.64 84.03 0.64 -11.94 16 15 H 0.07 3.68 7.61 -2.91 -0.02 3.65 16 16 C -0.05 -2.84 4.86 84.86 0.41 -2.43 16 17 N -0.91 -52.18 9.31 21.65 0.20 -51.98 16 18 Si 0.95 45.93 29.61 68.60 2.03 47.96 16 19 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 20 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 21 H -0.31 -15.56 7.11 99.48 0.71 -14.85 16 22 C 0.17 7.08 3.37 45.71 0.15 7.24 16 23 C -0.12 -5.14 6.41 31.67 0.20 -4.93 16 24 C -0.12 -3.74 6.91 31.88 0.22 -3.52 16 25 C -0.11 -3.54 6.83 31.67 0.22 -3.32 16 26 C -0.13 -4.50 6.13 31.32 0.19 -4.31 16 27 C -0.08 -2.02 2.04 -10.79 -0.02 -2.04 16 28 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 29 C -0.14 -3.89 8.68 71.98 0.62 -3.27 16 30 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.05 0.92 6.43 -2.39 -0.02 0.91 16 32 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 35 H 0.05 1.34 7.60 -2.39 -0.02 1.32 16 36 H 0.07 1.37 8.14 -2.39 -0.02 1.36 16 37 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 39 H 0.39 12.53 6.65 -92.71 -0.62 11.91 16 40 H 0.06 2.33 8.07 -2.39 -0.02 2.31 16 41 H 0.08 4.03 6.35 -2.39 -0.02 4.02 16 42 H 0.24 13.74 8.31 -92.71 -0.77 12.97 16 43 H 0.05 2.09 7.92 -2.39 -0.02 2.07 16 44 H 0.03 1.83 7.00 -2.39 -0.02 1.81 16 45 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 46 H 0.08 2.19 8.14 -2.38 -0.02 2.17 16 47 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 48 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 49 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 50 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 51 H 0.05 2.19 7.31 -2.39 -0.02 2.17 16 52 H 0.04 1.40 7.44 -2.38 -0.02 1.38 16 53 H 0.07 1.71 6.43 -2.39 -0.02 1.69 16 54 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -68.02 398.80 4.36 -63.66 By element: Atomic # 1 Polarization: 31.19 SS G_CDS: 0.23 Total: 31.42 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: 4.85 Total: -0.78 kcal Atomic # 7 Polarization: -106.99 SS G_CDS: -2.70 Total: -109.69 kcal Atomic # 8 Polarization: -32.53 SS G_CDS: -0.05 Total: -32.57 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.96 kcal Total: -68.02 4.36 -63.66 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247249954.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.872 kcal (2) G-P(sol) polarization free energy of solvation -68.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds