Wall clock time and date at job start Tue Mar 31 2020 15:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46761 * 2 1 4 4 C 1.52994 * 109.47251 * 239.99761 * 2 1 3 5 5 C 1.53003 * 109.47023 * 180.02562 * 4 2 1 6 6 C 1.52993 * 109.47144 * 59.99880 * 5 4 2 7 7 C 1.52994 * 109.47259 * 299.99976 * 6 5 4 8 8 H 1.09001 * 109.47433 * 300.00282 * 7 6 5 9 9 N 1.46507 * 109.47516 * 180.02562 * 7 6 5 10 10 C 1.34774 * 119.99996 * 84.71784 * 9 7 6 11 11 O 1.21280 * 119.99864 * 0.28478 * 10 9 7 12 12 C 1.50695 * 120.00094 * 180.27748 * 10 9 7 13 13 N 1.46507 * 109.47237 * 180.02562 * 12 10 9 14 14 C 1.36938 * 119.99778 * 264.02909 * 13 12 10 15 15 H 1.07998 * 120.00028 * 196.20556 * 14 13 12 16 16 C 1.38816 * 120.00178 * 16.21129 * 14 13 12 17 17 N 1.31626 * 119.99703 * 22.10849 * 16 14 13 18 18 Si 1.86790 * 120.00109 * 202.10879 * 16 14 13 19 19 H 1.48510 * 109.47152 * 89.99983 * 18 16 14 20 20 H 1.48496 * 109.47526 * 209.99832 * 18 16 14 21 21 H 1.48504 * 109.47277 * 330.00412 * 18 16 14 22 22 C 1.46493 * 119.99985 * 84.03436 * 13 12 10 23 23 C 1.54267 * 110.03110 * 237.16790 * 22 13 12 24 24 C 1.54884 * 104.19748 * 217.10544 * 23 22 13 25 25 C 1.54896 * 102.74955 * 37.93923 * 24 23 22 26 26 C 1.53872 * 110.03534 * 120.00208 * 22 13 12 27 27 C 1.52997 * 109.47251 * 60.00110 * 7 6 5 28 28 H 1.09000 * 109.47319 * 60.00278 * 27 7 6 29 29 C 1.53002 * 109.47261 * 180.02562 * 27 7 6 30 30 H 1.09000 * 109.47319 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47487 * 300.00388 * 1 2 3 32 32 H 1.09008 * 109.47159 * 60.00072 * 1 2 3 33 33 H 1.08997 * 109.47351 * 60.00147 * 4 2 1 34 34 H 1.09001 * 109.47433 * 299.99828 * 4 2 1 35 35 H 1.09007 * 109.47002 * 299.99753 * 5 4 2 36 36 H 1.08998 * 109.46800 * 180.02562 * 5 4 2 37 37 H 1.09004 * 109.46773 * 179.97438 * 6 5 4 38 38 H 1.09001 * 109.47129 * 60.00445 * 6 5 4 39 39 H 0.96992 * 119.99942 * 265.00692 * 9 7 6 40 40 H 1.08998 * 109.47389 * 300.00912 * 12 10 9 41 41 H 1.09006 * 109.47223 * 60.00550 * 12 10 9 42 42 H 0.97002 * 119.99476 * 179.97438 * 17 16 14 43 43 H 1.09005 * 110.01900 * 358.60240 * 22 13 12 44 44 H 1.09002 * 110.48408 * 335.78228 * 23 22 13 45 45 H 1.09000 * 110.49305 * 98.42339 * 23 22 13 46 46 H 1.09002 * 110.75377 * 279.62582 * 24 23 22 47 47 H 1.09001 * 110.91631 * 156.32771 * 24 23 22 48 48 H 1.09000 * 110.48703 * 203.38364 * 25 24 23 49 49 H 1.08997 * 110.59619 * 80.79485 * 25 24 23 50 50 H 1.09004 * 110.02941 * 238.56422 * 26 22 13 51 51 H 1.08995 * 110.03241 * 359.94433 * 26 22 13 52 52 H 1.08993 * 109.47332 * 59.99861 * 29 27 7 53 53 H 1.09001 * 109.47021 * 180.02562 * 29 27 7 54 54 H 1.08999 * 109.46660 * 299.99573 * 29 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5700 -0.7218 -1.2488 6 6 4.0794 -1.4433 0.0005 7 6 3.5694 -0.7220 1.2496 8 1 3.9331 0.3055 1.2498 9 7 4.0577 -1.4125 2.4459 10 6 5.2819 -1.1308 2.9342 11 8 5.9772 -0.3018 2.3862 12 6 5.7867 -1.8455 4.1610 13 7 7.1317 -1.3650 4.4875 14 6 8.2303 -2.0585 4.0547 15 1 9.1968 -1.8706 4.4984 16 6 8.1017 -3.0029 3.0455 17 7 7.0817 -2.9445 2.2155 18 14 9.3761 -4.3567 2.8653 19 1 8.9681 -5.5318 3.6765 20 1 9.4794 -4.7525 1.4378 21 1 10.6940 -3.8621 3.3385 22 6 7.3012 -0.1427 5.2770 23 6 8.1557 0.8767 4.4958 24 6 9.0226 1.5584 5.5833 25 6 9.3600 0.3851 6.5366 26 6 8.0669 -0.4553 6.5746 27 6 2.0395 -0.7215 1.2493 28 1 1.6757 -1.7490 1.2492 29 6 1.5294 0.0004 2.4982 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5139 -0.8900 33 1 1.6767 -0.2075 -2.1392 34 1 1.6767 -1.7490 -1.2491 35 1 3.9337 0.3058 -1.2486 36 1 3.9333 -1.2353 -2.1390 37 1 5.1695 -1.4440 0.0004 38 1 3.7158 -2.4709 0.0003 39 1 3.5017 -2.0755 2.8841 40 1 5.1173 -1.6475 4.9981 41 1 5.8204 -2.9179 3.9687 42 1 6.9921 -3.6043 1.5101 43 1 6.3277 0.2876 5.5123 44 1 8.7875 0.3670 3.7684 45 1 7.5182 1.6096 4.0013 46 1 8.4535 2.3282 6.1045 47 1 9.9308 1.9779 5.1506 48 1 9.6012 0.7592 7.5315 49 1 10.1869 -0.2048 6.1410 50 1 7.4654 -0.1759 7.4396 51 1 8.3116 -1.5166 6.6173 52 1 1.8931 1.0278 2.4980 53 1 0.4394 0.0003 2.4982 54 1 1.8924 -0.5134 3.3884 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000247249957.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:35 Heat of formation + Delta-G solvation = -60.946403 kcal Electronic energy + Delta-G solvation = -29787.073405 eV Core-core repulsion = 26143.295077 eV Total energy + Delta-G solvation = -3643.778328 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -40.86165 -39.63191 -38.62070 -35.84506 -34.93812 -33.94563 -32.79498 -31.49647 -29.33129 -29.07620 -28.07528 -27.61117 -26.32585 -24.43450 -22.47211 -21.93989 -21.35547 -21.14318 -20.73605 -20.36415 -18.31285 -17.41930 -17.31147 -16.65018 -16.29502 -15.88438 -15.67085 -15.49080 -15.32441 -15.15044 -14.86499 -14.79871 -14.27326 -14.12562 -13.98609 -13.64876 -13.45873 -13.17079 -12.94307 -12.81120 -12.68130 -12.60638 -12.55759 -12.41078 -12.28129 -12.12318 -11.95003 -11.86875 -11.79416 -11.75065 -11.73165 -11.62070 -11.34286 -11.31989 -11.21445 -11.16248 -10.91182 -10.54737 -10.07957 -9.48687 -8.63967 -7.77091 -5.07195 1.46541 1.48834 1.55406 2.51481 2.56902 2.84843 3.36713 3.64578 3.71121 3.83164 3.95388 3.98806 4.02698 4.14652 4.22839 4.30410 4.41677 4.49502 4.57098 4.59541 4.64067 4.67515 4.74406 4.77342 4.78652 4.86502 4.91865 4.93579 4.98319 5.01801 5.04157 5.05960 5.12327 5.17419 5.19844 5.21622 5.24105 5.28930 5.32374 5.32581 5.37148 5.39212 5.47869 5.56094 5.57534 5.65352 5.65997 5.72719 5.79403 6.12021 6.40835 7.11267 7.28581 7.94232 8.17809 8.40086 9.28516 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.013554 B = 0.004091 C = 0.003456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.350127 B = 6842.105704 C = 8099.748936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.083 4.083 3 H 0.060 0.940 4 C -0.106 4.106 5 C -0.113 4.113 6 C -0.117 4.117 7 C 0.166 3.834 8 H 0.041 0.959 9 N -0.732 5.732 10 C 0.528 3.472 11 O -0.576 6.576 12 C 0.160 3.840 13 N -0.577 5.577 14 C -0.235 4.235 15 H 0.067 0.933 16 C -0.050 4.050 17 N -0.909 5.909 18 Si 0.953 3.047 19 H -0.284 1.284 20 H -0.308 1.308 21 H -0.280 1.280 22 C 0.168 3.832 23 C -0.119 4.119 24 C -0.115 4.115 25 C -0.113 4.113 26 C -0.128 4.128 27 C -0.081 4.081 28 H 0.081 0.919 29 C -0.142 4.142 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.048 0.952 36 H 0.062 0.938 37 H 0.019 0.981 38 H 0.057 0.943 39 H 0.397 0.603 40 H 0.062 0.938 41 H 0.082 0.918 42 H 0.239 0.761 43 H 0.052 0.948 44 H 0.035 0.965 45 H 0.032 0.968 46 H 0.078 0.922 47 H 0.061 0.939 48 H 0.083 0.917 49 H 0.046 0.954 50 H 0.074 0.926 51 H 0.055 0.945 52 H 0.040 0.960 53 H 0.079 0.921 54 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.838 4.872 1.427 14.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.102 4.102 3 H 0.079 0.921 4 C -0.143 4.143 5 C -0.151 4.151 6 C -0.156 4.156 7 C 0.060 3.940 8 H 0.060 0.940 9 N -0.386 5.386 10 C 0.315 3.685 11 O -0.453 6.453 12 C 0.030 3.970 13 N -0.296 5.296 14 C -0.365 4.365 15 H 0.085 0.915 16 C -0.245 4.245 17 N -0.556 5.556 18 Si 0.784 3.216 19 H -0.211 1.211 20 H -0.236 1.236 21 H -0.205 1.205 22 C 0.061 3.939 23 C -0.159 4.159 24 C -0.153 4.153 25 C -0.150 4.150 26 C -0.167 4.167 27 C -0.100 4.100 28 H 0.099 0.901 29 C -0.199 4.199 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.067 0.933 36 H 0.081 0.919 37 H 0.038 0.962 38 H 0.076 0.924 39 H 0.231 0.769 40 H 0.080 0.920 41 H 0.100 0.900 42 H 0.049 0.951 43 H 0.071 0.929 44 H 0.053 0.947 45 H 0.051 0.949 46 H 0.097 0.903 47 H 0.080 0.920 48 H 0.101 0.899 49 H 0.065 0.935 50 H 0.092 0.908 51 H 0.074 0.926 52 H 0.060 0.940 53 H 0.097 0.903 54 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.322 5.369 0.956 14.395 hybrid contribution 1.068 -1.224 -0.768 1.797 sum -12.254 4.145 0.187 12.937 Atomic orbital electron populations 1.21826 0.93151 1.02433 1.02383 1.21109 0.96886 0.98822 0.93347 0.92140 1.21578 0.93381 1.01279 0.98090 1.21476 0.97276 0.99733 0.96647 1.21745 0.98743 0.99394 0.95682 1.20660 0.94095 0.94780 0.84454 0.94042 1.46060 1.18049 1.44472 1.29976 1.22000 0.79176 0.80555 0.86753 1.90480 1.56235 1.36814 1.61819 1.20636 0.85824 0.98847 0.91718 1.44185 1.01207 1.24949 1.59251 1.19182 0.89803 1.13864 1.13633 0.91475 1.25340 0.99990 1.03066 0.96123 1.70130 1.33361 1.35082 1.16979 0.85472 0.79685 0.80968 0.75498 1.21119 1.23608 1.20523 1.21163 0.96240 0.85657 0.90834 1.22567 0.98153 0.97391 0.97782 1.22430 0.99052 0.97490 0.96323 1.22236 0.97027 0.96211 0.99556 1.22526 0.96782 1.00054 0.97312 1.21348 0.91663 1.00814 0.96172 0.90082 1.21824 1.01702 0.99617 0.96729 0.92061 0.91782 0.91896 0.90459 0.91288 0.93291 0.91942 0.96201 0.92392 0.76853 0.91998 0.90019 0.95141 0.92948 0.94663 0.94939 0.90312 0.92025 0.89853 0.93549 0.90777 0.92609 0.94044 0.90253 0.92906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 8.84 71.98 0.64 -1.45 16 2 C -0.08 -1.68 2.25 -10.80 -0.02 -1.70 16 3 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 4 C -0.11 -2.20 5.20 30.59 0.16 -2.04 16 5 C -0.11 -3.18 5.92 30.59 0.18 -3.00 16 6 C -0.12 -4.16 5.49 30.59 0.17 -4.00 16 7 C 0.17 5.59 1.90 44.99 0.09 5.67 16 8 H 0.04 1.68 7.58 -2.39 -0.02 1.66 16 9 N -0.73 -27.04 4.39 -442.54 -1.94 -28.98 16 10 C 0.53 24.73 6.01 87.66 0.53 25.25 16 11 O -0.58 -32.54 15.80 -3.03 -0.05 -32.58 16 12 C 0.16 7.35 5.32 85.63 0.46 7.80 16 13 N -0.58 -28.34 1.97 -678.31 -1.34 -29.67 16 14 C -0.23 -12.74 7.64 84.03 0.64 -12.09 16 15 H 0.07 3.68 7.61 -2.91 -0.02 3.66 16 16 C -0.05 -2.77 4.86 84.86 0.41 -2.36 16 17 N -0.91 -52.13 9.31 21.65 0.20 -51.93 16 18 Si 0.95 46.01 29.61 68.60 2.03 48.04 16 19 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 20 H -0.31 -15.43 7.11 99.48 0.71 -14.73 16 21 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 22 C 0.17 7.07 3.37 45.72 0.15 7.22 16 23 C -0.12 -5.15 6.41 31.67 0.20 -4.95 16 24 C -0.12 -3.74 6.91 31.89 0.22 -3.52 16 25 C -0.11 -3.54 6.83 31.67 0.22 -3.32 16 26 C -0.13 -4.48 6.13 31.32 0.19 -4.29 16 27 C -0.08 -1.90 1.83 -10.79 -0.02 -1.92 16 28 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 29 C -0.14 -3.02 8.68 71.98 0.62 -2.40 16 30 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.06 0.88 6.43 -2.39 -0.02 0.86 16 32 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 33 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 36 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.02 0.91 8.14 -2.38 -0.02 0.89 16 38 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.40 12.35 8.39 -92.71 -0.78 11.57 16 40 H 0.06 2.40 8.07 -2.39 -0.02 2.38 16 41 H 0.08 4.06 6.35 -2.38 -0.02 4.05 16 42 H 0.24 13.80 8.31 -92.71 -0.77 13.02 16 43 H 0.05 2.11 7.92 -2.38 -0.02 2.09 16 44 H 0.03 1.81 7.00 -2.39 -0.02 1.80 16 45 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 46 H 0.08 2.19 8.14 -2.39 -0.02 2.18 16 47 H 0.06 1.89 8.14 -2.39 -0.02 1.88 16 48 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 49 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 50 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 51 H 0.06 2.19 7.31 -2.39 -0.02 2.17 16 52 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 53 H 0.08 1.30 6.43 -2.39 -0.02 1.28 16 54 H 0.05 1.18 7.45 -2.39 -0.02 1.16 16 Total: -1.00 -68.66 403.24 3.81 -64.85 By element: Atomic # 1 Polarization: 31.32 SS G_CDS: 0.07 Total: 31.38 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: 4.83 Total: -1.10 kcal Atomic # 7 Polarization: -107.51 SS G_CDS: -3.08 Total: -110.59 kcal Atomic # 8 Polarization: -32.54 SS G_CDS: -0.05 Total: -32.58 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal Total: -68.66 3.81 -64.85 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247249957.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.904 kcal (2) G-P(sol) polarization free energy of solvation -68.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds