Wall clock time and date at job start Tue Mar 31 2020 15:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.46802 * 2 1 4 4 C 1.52993 * 109.47644 * 240.00129 * 2 1 3 5 5 C 1.53003 * 109.46763 * 300.00319 * 4 2 1 6 6 C 1.53008 * 109.46997 * 299.99512 * 5 4 2 7 7 C 1.52995 * 109.46791 * 60.00272 * 6 5 4 8 8 H 1.08994 * 109.47134 * 59.99912 * 7 6 5 9 9 C 1.52999 * 109.46916 * 179.97438 * 7 6 5 10 10 C 1.50699 * 109.47192 * 295.00082 * 9 7 6 11 11 O 1.21269 * 119.99989 * 359.97438 * 10 9 7 12 12 N 1.34779 * 119.99626 * 180.02562 * 10 9 7 13 13 C 1.46504 * 119.99918 * 180.02562 * 12 10 9 14 14 C 1.52996 * 109.47136 * 179.97438 * 13 12 10 15 15 C 1.53038 * 109.45798 * 295.06363 * 14 13 12 16 16 C 1.53195 * 109.31063 * 178.61443 * 15 14 13 17 17 N 1.46924 * 108.77483 * 54.64002 * 16 15 14 18 18 C 1.36939 * 120.63338 * 126.41183 * 17 16 15 19 19 H 1.08001 * 119.99718 * 207.66061 * 18 17 16 20 20 C 1.38810 * 119.99850 * 27.66614 * 18 17 16 21 21 N 1.31623 * 120.00204 * 17.36422 * 20 18 17 22 22 Si 1.86803 * 119.99886 * 197.36658 * 20 18 17 23 23 H 1.48503 * 109.46848 * 60.00089 * 22 20 18 24 24 H 1.48503 * 109.47030 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.47127 * 299.99663 * 22 20 18 26 26 C 1.46928 * 118.73633 * 306.39099 * 17 16 15 27 27 C 1.53041 * 109.45682 * 175.00104 * 14 13 12 28 28 C 1.52996 * 109.47049 * 119.99724 * 2 1 3 29 29 H 1.08998 * 109.47766 * 300.00031 * 1 2 3 30 30 H 1.08995 * 109.47226 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46967 * 59.99999 * 1 2 3 32 32 H 1.09002 * 109.47235 * 59.99441 * 4 2 1 33 33 H 1.08997 * 109.47794 * 180.02562 * 4 2 1 34 34 H 1.09008 * 109.46716 * 180.02562 * 5 4 2 35 35 H 1.08998 * 109.47807 * 59.99796 * 5 4 2 36 36 H 1.09002 * 109.46741 * 300.00362 * 6 5 4 37 37 H 1.08995 * 109.46880 * 180.02562 * 6 5 4 38 38 H 1.09004 * 109.46807 * 55.00352 * 9 7 6 39 39 H 1.09001 * 109.47084 * 174.99865 * 9 7 6 40 40 H 0.97002 * 120.00373 * 359.97438 * 12 10 9 41 41 H 1.08996 * 109.46834 * 300.00376 * 13 12 10 42 42 H 1.08998 * 109.46734 * 59.99716 * 13 12 10 43 43 H 1.08994 * 109.45922 * 55.02741 * 14 13 12 44 44 H 1.08994 * 109.50525 * 298.56809 * 15 14 13 45 45 H 1.09004 * 109.49796 * 58.67080 * 15 14 13 46 46 H 1.08999 * 109.58955 * 294.85242 * 16 15 14 47 47 H 1.09003 * 109.58794 * 174.42211 * 16 15 14 48 48 H 0.96992 * 119.99754 * 180.02562 * 21 20 18 49 49 H 1.09007 * 109.58799 * 293.81841 * 26 17 16 50 50 H 1.09005 * 109.70323 * 173.46925 * 26 17 16 51 51 H 1.09004 * 109.49471 * 301.33288 * 27 14 13 52 52 H 1.08996 * 109.50134 * 61.43253 * 27 14 13 53 53 H 1.08994 * 109.47341 * 180.02562 * 28 2 1 54 54 H 1.09007 * 109.47573 * 300.00515 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.5301 -2.1637 -1.2492 6 6 2.0401 -2.8850 0.0001 7 6 1.5300 -2.1637 1.2493 8 1 0.4401 -2.1637 1.2492 9 6 2.0394 -2.8853 2.4985 10 6 1.4381 -4.2657 2.5616 11 8 0.6767 -4.6357 1.6933 12 7 1.7457 -5.0886 3.5838 13 6 1.1616 -6.4308 3.6449 14 6 1.6710 -7.1522 4.8942 15 6 3.1810 -7.3712 4.7764 16 6 3.6931 -8.0627 6.0439 17 7 2.9196 -9.2937 6.2563 18 6 3.5533 -10.4971 6.4156 19 1 3.0544 -11.4118 6.1314 20 6 4.8368 -10.5413 6.9423 21 7 5.3153 -9.5049 7.5977 22 14 5.8851 -12.0715 6.7210 23 1 6.0827 -12.3307 5.2722 24 1 7.2044 -11.8660 7.3710 25 1 5.2018 -13.2338 7.3432 26 6 1.4533 -9.2088 6.2951 27 6 0.9664 -8.5045 5.0248 28 6 2.0400 -0.7212 1.2492 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 -0.8900 32 1 1.6768 -0.2074 -2.1392 33 1 3.1301 -0.7216 -1.2490 34 1 1.8939 -2.6776 -2.1390 35 1 0.4401 -2.1638 -1.2492 36 1 3.1301 -2.8849 0.0001 37 1 1.6771 -3.9127 -0.0002 38 1 3.1258 -2.9638 2.4551 39 1 1.7511 -2.3224 3.3863 40 1 2.3545 -4.7925 4.2785 41 1 0.0753 -6.3525 3.6875 42 1 1.4508 -6.9936 2.7574 43 1 1.4597 -6.5461 5.7751 44 1 3.3913 -7.9980 3.9098 45 1 3.6802 -6.4092 4.6599 46 1 3.5657 -7.3990 6.8991 47 1 4.7479 -8.3100 5.9245 48 1 6.2123 -9.5357 7.9654 49 1 1.1433 -8.6385 7.1709 50 1 1.0283 -10.2114 6.3428 51 1 -0.1108 -8.3491 5.0852 52 1 1.1975 -9.1206 4.1559 53 1 3.1299 -0.7208 1.2495 54 1 1.6766 -0.2074 2.1393 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330881523.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:14:15 Heat of formation + Delta-G solvation = -78.314464 kcal Electronic energy + Delta-G solvation = -27956.948016 eV Core-core repulsion = 24312.416552 eV Total energy + Delta-G solvation = -3644.531464 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.16029 -39.85538 -39.12648 -36.36603 -34.50174 -34.01490 -32.49417 -32.22743 -31.51488 -29.12767 -27.66951 -27.46892 -25.56156 -23.85930 -23.15376 -22.91848 -22.19545 -21.20275 -20.56890 -19.50339 -18.71807 -17.80935 -17.02990 -16.80859 -16.57395 -16.28726 -15.76716 -15.44766 -15.39170 -15.28633 -15.09269 -14.79964 -14.68096 -14.28659 -14.02529 -13.94191 -13.69753 -13.54028 -13.36622 -13.07687 -12.94176 -12.83013 -12.61040 -12.54688 -12.36622 -12.31445 -12.27752 -11.97232 -11.84420 -11.83235 -11.69323 -11.60556 -11.27006 -11.16640 -11.12317 -10.97729 -10.82115 -10.52927 -10.44966 -9.97472 -8.66997 -7.87348 -5.31474 1.46055 1.48347 1.54927 1.74658 2.32132 2.51262 3.26627 3.71552 3.75497 3.78058 3.83582 3.87107 3.96302 4.03945 4.09536 4.23648 4.33569 4.43421 4.53119 4.54308 4.55605 4.60389 4.64834 4.70485 4.72546 4.74443 4.78978 4.84272 4.89982 4.90259 4.93129 5.04061 5.05377 5.10194 5.16316 5.18263 5.20270 5.25842 5.30049 5.35382 5.38242 5.42094 5.45673 5.49335 5.52115 5.57862 5.63713 5.67003 5.71432 5.79978 6.40037 6.64750 7.16233 7.35283 7.88466 8.38812 9.18524 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.025409 B = 0.002105 C = 0.002050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.727708 B =13296.817107 C =13657.283651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.091 4.091 3 H 0.079 0.921 4 C -0.112 4.112 5 C -0.119 4.119 6 C -0.118 4.118 7 C -0.067 4.067 8 H 0.063 0.937 9 C -0.134 4.134 10 C 0.506 3.494 11 O -0.580 6.580 12 N -0.722 5.722 13 C 0.137 3.863 14 C -0.078 4.078 15 C -0.119 4.119 16 C 0.175 3.825 17 N -0.613 5.613 18 C -0.263 4.263 19 H 0.063 0.937 20 C -0.051 4.051 21 N -0.933 5.933 22 Si 0.964 3.036 23 H -0.281 1.281 24 H -0.293 1.293 25 H -0.276 1.276 26 C 0.141 3.859 27 C -0.116 4.116 28 C -0.106 4.106 29 H 0.056 0.944 30 H 0.049 0.951 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.058 0.942 37 H 0.051 0.949 38 H 0.109 0.891 39 H 0.116 0.884 40 H 0.412 0.588 41 H 0.064 0.936 42 H 0.049 0.951 43 H 0.077 0.923 44 H 0.042 0.958 45 H 0.072 0.928 46 H 0.000 1.000 47 H 0.051 0.949 48 H 0.250 0.750 49 H 0.017 0.983 50 H 0.051 0.949 51 H 0.082 0.918 52 H 0.052 0.948 53 H 0.070 0.930 54 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.371 21.078 -13.398 26.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.109 4.109 3 H 0.097 0.903 4 C -0.149 4.149 5 C -0.156 4.156 6 C -0.156 4.156 7 C -0.086 4.086 8 H 0.081 0.919 9 C -0.174 4.174 10 C 0.294 3.706 11 O -0.461 6.461 12 N -0.374 5.374 13 C 0.013 3.987 14 C -0.097 4.097 15 C -0.158 4.158 16 C 0.050 3.950 17 N -0.336 5.336 18 C -0.394 4.394 19 H 0.081 0.919 20 C -0.246 4.246 21 N -0.579 5.579 22 Si 0.793 3.207 23 H -0.207 1.207 24 H -0.219 1.219 25 H -0.202 1.202 26 C 0.015 3.985 27 C -0.155 4.155 28 C -0.143 4.143 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.069 0.931 38 H 0.127 0.873 39 H 0.134 0.866 40 H 0.248 0.752 41 H 0.083 0.917 42 H 0.068 0.932 43 H 0.095 0.905 44 H 0.061 0.939 45 H 0.090 0.910 46 H 0.019 0.981 47 H 0.069 0.931 48 H 0.059 0.941 49 H 0.035 0.965 50 H 0.070 0.930 51 H 0.101 0.899 52 H 0.071 0.929 53 H 0.089 0.911 54 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.770 20.804 -13.918 26.208 hybrid contribution 0.982 -1.157 0.526 1.606 sum -6.788 19.647 -13.392 24.727 Atomic orbital electron populations 1.21938 0.95660 1.01555 1.01704 1.21094 0.95717 0.99362 0.94716 0.90255 1.21561 1.00601 0.94870 0.97873 1.21524 1.00531 0.96213 0.97346 1.21645 0.99939 0.99309 0.94686 1.20880 1.00283 0.94703 0.92765 0.91852 1.21833 1.02839 0.91184 1.01518 1.21328 0.80746 0.88086 0.80399 1.90646 1.38025 1.77708 1.39694 1.46099 1.49157 1.15101 1.27061 1.21225 0.97565 0.82470 0.97463 1.21151 0.95132 0.96383 0.97027 1.22027 0.95570 0.99734 0.98481 1.20613 0.95836 0.85958 0.92605 1.44342 1.01114 1.04488 1.83692 1.19465 0.98806 0.86602 1.34491 0.91924 1.25751 1.00799 1.00233 0.97851 1.70166 1.17123 1.32369 1.38251 0.85389 0.77877 0.79776 0.77703 1.20676 1.21890 1.20176 1.21043 0.83931 0.98311 0.95170 1.21861 0.99689 0.95486 0.98491 1.21610 1.01002 0.93616 0.98100 0.92443 0.93212 0.92643 0.91748 0.91738 0.92623 0.92619 0.92334 0.93063 0.87262 0.86620 0.75183 0.91721 0.93223 0.90479 0.93927 0.90960 0.98144 0.93091 0.94101 0.96519 0.93038 0.89910 0.92903 0.91101 0.90884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 8.50 71.98 0.61 -1.38 16 2 C -0.09 -1.10 3.19 -10.80 -0.03 -1.14 16 3 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 4 C -0.11 -1.49 5.45 30.59 0.17 -1.32 16 5 C -0.12 -2.06 5.65 30.60 0.17 -1.88 16 6 C -0.12 -2.33 4.94 30.60 0.15 -2.17 16 7 C -0.07 -1.13 1.56 -10.79 -0.02 -1.15 16 8 H 0.06 1.30 6.24 -2.39 -0.01 1.29 16 9 C -0.13 -2.07 5.18 29.85 0.15 -1.91 16 10 C 0.51 11.87 7.55 87.66 0.66 12.53 16 11 O -0.58 -18.23 13.97 -3.00 -0.04 -18.27 16 12 N -0.72 -16.00 5.27 -463.07 -2.44 -18.44 16 13 C 0.14 3.59 5.06 86.38 0.44 4.02 16 14 C -0.08 -2.28 2.19 -10.77 -0.02 -2.30 16 15 C -0.12 -4.14 5.25 30.67 0.16 -3.98 16 16 C 0.18 8.18 5.31 86.36 0.46 8.64 16 17 N -0.61 -30.50 2.99 -699.08 -2.09 -32.59 16 18 C -0.26 -14.55 9.59 84.03 0.81 -13.75 16 19 H 0.06 3.40 7.89 -2.91 -0.02 3.38 16 20 C -0.05 -2.85 4.91 84.86 0.42 -2.43 16 21 N -0.93 -54.79 11.19 21.65 0.24 -54.55 16 22 Si 0.96 44.98 29.59 68.60 2.03 47.01 16 23 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 24 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 25 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 26 C 0.14 5.70 6.51 86.36 0.56 6.26 16 27 C -0.12 -3.69 5.36 30.67 0.16 -3.53 16 28 C -0.11 -1.28 4.73 30.59 0.14 -1.14 16 29 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.05 0.81 4.81 -2.39 -0.01 0.80 16 31 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 32 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 35 H 0.06 1.05 6.43 -2.39 -0.02 1.03 16 36 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.05 1.34 5.95 -2.39 -0.01 1.33 16 38 H 0.11 1.36 8.14 -2.38 -0.02 1.34 16 39 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.41 7.36 7.65 -92.71 -0.71 6.65 16 41 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 44 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 45 H 0.07 2.11 7.15 -2.38 -0.02 2.10 16 46 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 47 H 0.05 2.73 6.04 -2.39 -0.01 2.72 16 48 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 49 H 0.02 0.68 8.14 -2.38 -0.02 0.66 16 50 H 0.05 2.07 7.94 -2.38 -0.02 2.05 16 51 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 52 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 53 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 54 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 Total: -1.00 -67.17 398.36 2.83 -64.34 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: 0.14 Total: 19.14 kcal Atomic # 6 Polarization: -11.63 SS G_CDS: 4.99 Total: -6.64 kcal Atomic # 7 Polarization: -101.29 SS G_CDS: -4.29 Total: -105.58 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: -0.04 Total: -18.27 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -67.17 2.83 -64.34 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330881523.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.975 kcal (2) G-P(sol) polarization free energy of solvation -67.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds