Wall clock time and date at job start Tue Mar 31 2020 15:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47338 * 2 1 4 4 C 1.53004 * 109.47460 * 120.00344 * 2 1 3 5 5 C 1.53000 * 109.47049 * 179.97438 * 4 2 1 6 6 C 1.52997 * 109.47372 * 299.99822 * 5 4 2 7 7 C 1.52995 * 109.47039 * 59.99702 * 6 5 4 8 8 H 1.09004 * 109.47224 * 60.00638 * 7 6 5 9 9 C 1.53001 * 109.47367 * 179.97438 * 7 6 5 10 10 C 1.50706 * 109.47171 * 295.00794 * 9 7 6 11 11 O 1.21279 * 119.99695 * 359.97438 * 10 9 7 12 12 N 1.34776 * 119.99633 * 179.97438 * 10 9 7 13 13 C 1.46502 * 119.99362 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.46743 * 179.97438 * 13 12 10 15 15 C 1.53034 * 109.46371 * 295.06551 * 14 13 12 16 16 C 1.53188 * 109.31493 * 178.61385 * 15 14 13 17 17 N 1.46929 * 108.77602 * 54.63743 * 16 15 14 18 18 C 1.36932 * 120.63264 * 126.36677 * 17 16 15 19 19 H 1.08003 * 120.00395 * 207.70218 * 18 17 16 20 20 C 1.38817 * 119.99891 * 27.70230 * 18 17 16 21 21 N 1.31617 * 119.99825 * 17.34712 * 20 18 17 22 22 Si 1.86800 * 119.99875 * 197.35144 * 20 18 17 23 23 H 1.48495 * 109.47515 * 59.99848 * 22 20 18 24 24 H 1.48499 * 109.46941 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.46905 * 299.99852 * 22 20 18 26 26 C 1.46922 * 118.73539 * 306.39118 * 17 16 15 27 27 C 1.53048 * 109.45825 * 174.99657 * 14 13 12 28 28 C 1.53002 * 109.46763 * 239.99966 * 2 1 3 29 29 H 1.09004 * 109.47184 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46947 * 299.99750 * 1 2 3 31 31 H 1.08997 * 109.47737 * 60.00040 * 1 2 3 32 32 H 1.08999 * 109.46504 * 299.99829 * 4 2 1 33 33 H 1.09000 * 109.47126 * 59.99526 * 4 2 1 34 34 H 1.09000 * 109.46879 * 60.00059 * 5 4 2 35 35 H 1.09004 * 109.46538 * 179.97438 * 5 4 2 36 36 H 1.09000 * 109.46919 * 300.00342 * 6 5 4 37 37 H 1.09000 * 109.47304 * 180.02562 * 6 5 4 38 38 H 1.08992 * 109.47841 * 175.00352 * 9 7 6 39 39 H 1.09008 * 109.46851 * 55.00425 * 9 7 6 40 40 H 0.96999 * 120.00760 * 359.97438 * 12 10 9 41 41 H 1.08994 * 109.47677 * 59.99883 * 13 12 10 42 42 H 1.08999 * 109.46979 * 299.99723 * 13 12 10 43 43 H 1.09003 * 109.46242 * 55.03007 * 14 13 12 44 44 H 1.08995 * 109.49881 * 298.56984 * 15 14 13 45 45 H 1.09005 * 109.49580 * 58.66175 * 15 14 13 46 46 H 1.09002 * 109.58709 * 294.84878 * 16 15 14 47 47 H 1.09004 * 109.58509 * 174.42433 * 16 15 14 48 48 H 0.97008 * 119.99685 * 179.97438 * 21 20 18 49 49 H 1.08995 * 109.58953 * 293.82123 * 26 17 16 50 50 H 1.09008 * 109.58500 * 173.39338 * 26 17 16 51 51 H 1.08998 * 109.49719 * 301.33633 * 27 14 13 52 52 H 1.08994 * 109.49445 * 61.40417 * 27 14 13 53 53 H 1.09004 * 109.47218 * 60.00373 * 28 2 1 54 54 H 1.09000 * 109.47614 * 299.99735 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5700 -0.7218 1.2488 6 6 4.0795 -1.4434 -0.0005 7 6 3.5694 -0.7222 -1.2496 8 1 3.9331 0.3054 -1.2499 9 6 4.0794 -1.4433 -2.4989 10 6 5.5813 -1.3370 -2.5624 11 8 6.1843 -0.7425 -1.6942 12 7 6.2543 -1.9025 -3.5841 13 6 7.7143 -1.7986 -3.6461 14 6 8.2243 -2.5210 -4.8947 15 6 7.9281 -4.0176 -4.7747 16 6 8.4089 -4.7324 -6.0414 17 7 9.8271 -4.4133 -6.2551 18 6 10.7509 -5.4117 -6.4126 19 1 11.7796 -5.2454 -6.1286 20 6 10.3653 -6.6377 -6.9373 21 7 9.2287 -6.7449 -7.5922 22 14 11.4594 -8.1351 -6.7136 23 1 11.6384 -8.4054 -5.2644 24 1 10.8264 -9.3118 -7.3616 25 1 12.7828 -7.8786 -7.3364 26 6 10.2353 -3.0025 -6.2961 27 6 9.7340 -2.3070 -5.0265 28 6 2.0398 -0.7213 -1.2493 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.6767 -0.2075 2.1392 33 1 1.6767 -1.7490 1.2492 34 1 3.9337 0.3057 1.2486 35 1 3.9334 -1.2353 2.1390 36 1 3.7158 -2.4709 -0.0002 37 1 5.1695 -1.4441 -0.0005 38 1 3.6448 -0.9839 -3.3866 39 1 3.7910 -2.4936 -2.4553 40 1 5.7720 -2.3783 -4.2783 41 1 8.1493 -2.2574 -2.7582 42 1 8.0022 -0.7483 -3.6904 43 1 7.7227 -2.1212 -5.7760 44 1 8.4496 -4.4233 -3.9079 45 1 6.8549 -4.1677 -4.6574 46 1 7.8250 -4.3925 -6.8968 47 1 8.2909 -5.8092 -5.9204 48 1 8.9594 -7.6016 -7.9592 49 1 9.8003 -2.5215 -7.1722 50 1 11.3224 -2.9378 -6.3432 51 1 9.9461 -1.2396 -5.0885 52 1 10.2384 -2.7283 -4.1570 53 1 1.6765 -0.2074 -2.1393 54 1 1.6766 -1.7490 -1.2493 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330881524.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:14:19 Heat of formation + Delta-G solvation = -82.537145 kcal Electronic energy + Delta-G solvation = -27761.662229 eV Core-core repulsion = 24116.947656 eV Total energy + Delta-G solvation = -3644.714573 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.10259 -39.71984 -39.04454 -36.36963 -34.50342 -34.24598 -32.75720 -32.29925 -31.51404 -29.16701 -27.64223 -27.11041 -25.56388 -23.85954 -23.01926 -22.66537 -21.96753 -21.05567 -20.62365 -20.51163 -18.72199 -17.87184 -16.89969 -16.80897 -16.55862 -16.09932 -15.78766 -15.45831 -15.32225 -15.28707 -14.99803 -14.82575 -14.74705 -14.36192 -14.04272 -13.97015 -13.73025 -13.45773 -13.20696 -13.07683 -13.01087 -12.84021 -12.66852 -12.54980 -12.44132 -12.31598 -12.13920 -11.97281 -11.84296 -11.84132 -11.65205 -11.60549 -11.31235 -11.25660 -11.16163 -11.11266 -10.82023 -10.53444 -10.48737 -9.98097 -8.66803 -7.87314 -5.31319 1.46086 1.48396 1.54970 1.74045 2.31483 2.51315 3.26705 3.71685 3.72869 3.76590 3.81617 3.87142 3.96423 4.04647 4.09106 4.19308 4.34794 4.39456 4.53188 4.54746 4.55672 4.59326 4.64610 4.70207 4.74254 4.77088 4.82062 4.82885 4.86632 4.93157 4.93309 4.99945 5.04376 5.06412 5.14053 5.18146 5.23653 5.25990 5.30085 5.32671 5.38104 5.42146 5.45654 5.49343 5.50720 5.56615 5.60822 5.66831 5.68544 5.80054 6.40079 6.64359 7.16310 7.34811 7.88597 8.38971 9.18567 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.023853 B = 0.002060 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.584890 B =13589.751158 C =13935.335647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.093 4.093 3 H 0.062 0.938 4 C -0.110 4.110 5 C -0.117 4.117 6 C -0.119 4.119 7 C -0.066 4.066 8 H 0.057 0.943 9 C -0.133 4.133 10 C 0.506 3.494 11 O -0.581 6.581 12 N -0.722 5.722 13 C 0.137 3.863 14 C -0.078 4.078 15 C -0.119 4.119 16 C 0.175 3.825 17 N -0.612 5.612 18 C -0.263 4.263 19 H 0.063 0.937 20 C -0.051 4.051 21 N -0.933 5.933 22 Si 0.964 3.036 23 H -0.281 1.281 24 H -0.293 1.293 25 H -0.276 1.276 26 C 0.141 3.859 27 C -0.116 4.116 28 C -0.104 4.104 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.050 0.950 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.051 0.949 38 H 0.116 0.884 39 H 0.110 0.890 40 H 0.412 0.588 41 H 0.049 0.951 42 H 0.064 0.936 43 H 0.077 0.923 44 H 0.042 0.958 45 H 0.072 0.928 46 H 0.001 0.999 47 H 0.051 0.949 48 H 0.250 0.750 49 H 0.017 0.983 50 H 0.051 0.949 51 H 0.082 0.918 52 H 0.052 0.948 53 H 0.073 0.927 54 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.925 13.547 13.360 26.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 H 0.080 0.920 4 C -0.148 4.148 5 C -0.155 4.155 6 C -0.156 4.156 7 C -0.085 4.085 8 H 0.076 0.924 9 C -0.173 4.173 10 C 0.294 3.706 11 O -0.461 6.461 12 N -0.374 5.374 13 C 0.013 3.987 14 C -0.097 4.097 15 C -0.158 4.158 16 C 0.050 3.950 17 N -0.336 5.336 18 C -0.394 4.394 19 H 0.081 0.919 20 C -0.246 4.246 21 N -0.579 5.579 22 Si 0.793 3.207 23 H -0.207 1.207 24 H -0.219 1.219 25 H -0.202 1.202 26 C 0.015 3.985 27 C -0.155 4.155 28 C -0.141 4.141 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.134 0.866 39 H 0.128 0.872 40 H 0.248 0.752 41 H 0.068 0.932 42 H 0.083 0.917 43 H 0.095 0.905 44 H 0.061 0.939 45 H 0.091 0.909 46 H 0.019 0.981 47 H 0.069 0.931 48 H 0.059 0.941 49 H 0.035 0.965 50 H 0.070 0.930 51 H 0.101 0.899 52 H 0.071 0.929 53 H 0.091 0.909 54 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -17.538 13.829 13.880 26.296 hybrid contribution 0.774 -1.278 -0.516 1.581 sum -16.764 12.551 13.363 24.843 Atomic orbital electron populations 1.21801 0.94332 1.02075 1.01939 1.21122 0.95990 0.99223 0.94796 0.91999 1.21586 0.94518 1.00865 0.97812 1.21488 0.96360 1.00145 0.97506 1.21653 1.00508 0.98871 0.94600 1.20833 0.95756 0.98978 0.92944 0.92417 1.21819 0.89429 1.04607 1.01405 1.21329 0.91500 0.77334 0.80404 1.90650 1.71581 1.44188 1.39714 1.46093 1.07668 1.56516 1.27108 1.21228 0.80143 0.99885 0.97483 1.21153 0.96541 0.94966 0.97025 1.22028 1.00127 0.95191 0.98491 1.20612 0.83343 0.98458 0.92606 1.44335 1.04550 1.01038 1.83686 1.19464 0.92190 0.93157 1.34563 0.91935 1.25752 0.99189 1.01824 0.97868 1.70168 1.25067 1.24373 1.38286 0.85387 0.78490 0.79156 0.77705 1.20680 1.21890 1.20187 1.21046 0.97802 0.84431 0.95171 1.21863 0.94776 1.00406 0.98501 1.21622 0.93081 1.01403 0.98039 0.92409 0.92561 0.92274 0.91759 0.91747 0.93071 0.92345 0.92194 0.92980 0.86551 0.87169 0.75158 0.93209 0.91721 0.90468 0.93925 0.90946 0.98133 0.93100 0.94104 0.96482 0.93045 0.89914 0.92911 0.90882 0.91118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.19 71.98 0.66 -0.78 16 2 C -0.09 -1.17 2.72 -10.79 -0.03 -1.20 16 3 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 4 C -0.11 -1.50 5.20 30.60 0.16 -1.34 16 5 C -0.12 -2.05 5.92 30.59 0.18 -1.87 16 6 C -0.12 -2.35 4.94 30.59 0.15 -2.20 16 7 C -0.07 -1.12 1.83 -10.81 -0.02 -1.14 16 8 H 0.06 1.21 7.95 -2.39 -0.02 1.19 16 9 C -0.13 -2.05 5.18 29.85 0.15 -1.90 16 10 C 0.51 11.88 7.55 87.66 0.66 12.54 16 11 O -0.58 -18.33 13.97 -3.03 -0.04 -18.37 16 12 N -0.72 -15.98 5.27 -463.05 -2.44 -18.42 16 13 C 0.14 3.58 5.07 86.38 0.44 4.02 16 14 C -0.08 -2.28 2.19 -10.77 -0.02 -2.30 16 15 C -0.12 -4.15 5.25 30.67 0.16 -3.99 16 16 C 0.18 8.17 5.31 86.36 0.46 8.63 16 17 N -0.61 -30.45 2.99 -699.09 -2.09 -32.55 16 18 C -0.26 -14.55 9.58 84.04 0.81 -13.75 16 19 H 0.06 3.39 7.89 -2.91 -0.02 3.37 16 20 C -0.05 -2.85 4.91 84.86 0.42 -2.43 16 21 N -0.93 -54.76 11.19 21.65 0.24 -54.52 16 22 Si 0.96 44.98 29.59 68.60 2.03 47.01 16 23 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 24 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 25 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 26 C 0.14 5.70 6.52 86.36 0.56 6.26 16 27 C -0.12 -3.69 5.36 30.67 0.16 -3.53 16 28 C -0.10 -1.29 4.48 30.58 0.14 -1.15 16 29 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 31 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 36 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.05 1.36 5.95 -2.39 -0.01 1.35 16 38 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.11 1.36 8.14 -2.38 -0.02 1.34 16 40 H 0.41 7.34 7.65 -92.71 -0.71 6.63 16 41 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 44 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 45 H 0.07 2.11 7.15 -2.38 -0.02 2.10 16 46 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 47 H 0.05 2.73 6.04 -2.38 -0.01 2.71 16 48 H 0.25 14.23 8.31 -92.70 -0.77 13.46 16 49 H 0.02 0.69 8.14 -2.39 -0.02 0.68 16 50 H 0.05 2.07 7.93 -2.38 -0.02 2.05 16 51 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 52 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 53 H 0.07 0.76 8.14 -2.38 -0.02 0.75 16 54 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -67.21 405.38 2.86 -64.35 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: 0.13 Total: 18.62 kcal Atomic # 6 Polarization: -11.17 SS G_CDS: 5.04 Total: -6.13 kcal Atomic # 7 Polarization: -101.19 SS G_CDS: -4.29 Total: -105.48 kcal Atomic # 8 Polarization: -18.33 SS G_CDS: -0.04 Total: -18.37 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -67.21 2.86 -64.35 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330881524.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.190 kcal (2) G-P(sol) polarization free energy of solvation -67.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds