Wall clock time and date at job start Tue Mar 31 2020 15:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47145 * 2 1 4 4 C 1.53004 * 109.47181 * 120.00204 * 2 1 3 5 5 C 1.52999 * 109.47004 * 60.00250 * 4 2 1 6 6 C 1.52996 * 109.47704 * 59.99687 * 5 4 2 7 7 C 1.53004 * 109.47146 * 300.00226 * 6 5 4 8 8 H 1.09001 * 109.46793 * 300.00266 * 7 6 5 9 9 C 1.52999 * 109.47052 * 179.97438 * 7 6 5 10 10 C 1.50701 * 109.46844 * 65.00397 * 9 7 6 11 11 O 1.21281 * 120.00309 * 359.97438 * 10 9 7 12 12 N 1.34778 * 119.99609 * 180.02562 * 10 9 7 13 13 C 1.46503 * 119.99558 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.46793 * 179.97438 * 13 12 10 15 15 C 1.53043 * 109.45880 * 184.99885 * 14 13 12 16 16 C 1.53191 * 109.34142 * 178.61053 * 15 14 13 17 17 N 1.46999 * 108.73754 * 54.61863 * 16 15 14 18 18 C 1.36937 * 120.61422 * 126.38768 * 17 16 15 19 19 H 1.07997 * 119.99904 * 332.65267 * 18 17 16 20 20 C 1.38809 * 120.00191 * 152.64365 * 18 17 16 21 21 N 1.31616 * 120.00046 * 159.34534 * 20 18 17 22 22 Si 1.86800 * 120.00036 * 339.34984 * 20 18 17 23 23 H 1.48496 * 109.47488 * 92.95745 * 22 20 18 24 24 H 1.48504 * 109.47112 * 212.95936 * 22 20 18 25 25 H 1.48505 * 109.47310 * 332.95684 * 22 20 18 26 26 C 1.46923 * 118.75607 * 306.41470 * 17 16 15 27 27 C 1.53040 * 109.45296 * 64.93859 * 14 13 12 28 28 C 1.52999 * 109.47089 * 240.00134 * 2 1 3 29 29 H 1.08992 * 109.47385 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46897 * 299.99963 * 1 2 3 31 31 H 1.08997 * 109.47334 * 59.99539 * 1 2 3 32 32 H 1.09000 * 109.46650 * 179.97438 * 4 2 1 33 33 H 1.08994 * 109.46788 * 299.99243 * 4 2 1 34 34 H 1.09003 * 109.46917 * 180.02562 * 5 4 2 35 35 H 1.09003 * 109.46482 * 299.99736 * 5 4 2 36 36 H 1.08992 * 109.47033 * 180.02562 * 6 5 4 37 37 H 1.09001 * 109.46749 * 60.00038 * 6 5 4 38 38 H 1.08994 * 109.47483 * 305.00003 * 9 7 6 39 39 H 1.09000 * 109.46609 * 184.99716 * 9 7 6 40 40 H 0.96993 * 120.00471 * 359.97438 * 12 10 9 41 41 H 1.08994 * 109.47307 * 59.99528 * 13 12 10 42 42 H 1.09000 * 109.47421 * 299.99489 * 13 12 10 43 43 H 1.08996 * 109.45886 * 304.96811 * 14 13 12 44 44 H 1.08999 * 109.49873 * 298.57795 * 15 14 13 45 45 H 1.08999 * 109.50163 * 58.64161 * 15 14 13 46 46 H 1.09000 * 109.59393 * 174.43835 * 16 15 14 47 47 H 1.09001 * 109.58797 * 294.86408 * 16 15 14 48 48 H 0.97001 * 120.00081 * 180.02562 * 21 20 18 49 49 H 1.09000 * 109.58756 * 293.81440 * 26 17 16 50 50 H 1.09004 * 109.70481 * 173.46683 * 26 17 16 51 51 H 1.09000 * 109.49457 * 301.32741 * 27 14 13 52 52 H 1.09002 * 109.49687 * 61.39043 * 27 14 13 53 53 H 1.09001 * 109.47830 * 179.97438 * 28 2 1 54 54 H 1.09004 * 109.47382 * 59.99720 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5300 -2.1638 1.2491 6 6 2.0399 -2.8851 -0.0001 7 6 1.5299 -2.1637 -1.2493 8 1 0.4399 -2.1637 -1.2492 9 6 2.0403 -2.8846 -2.4986 10 6 1.4398 -4.2653 -2.5624 11 8 0.6788 -4.6364 -1.6939 12 7 1.7491 -5.0882 -3.5840 13 6 1.1657 -6.4306 -3.6457 14 6 1.6761 -7.1515 -4.8950 15 6 0.9723 -8.5041 -5.0264 16 6 1.4597 -9.2084 -6.2966 17 7 2.9267 -9.2919 -6.2569 18 6 3.5612 -10.4951 -6.4150 19 1 3.0607 -11.4104 -6.1357 20 6 4.8477 -10.5383 -6.9346 21 7 5.6085 -11.5909 -6.7214 22 14 5.4991 -9.1026 -7.9365 23 1 6.2260 -8.1650 -7.0433 24 1 6.4246 -9.6080 -8.9821 25 1 4.3646 -8.3932 -8.5807 26 6 3.6993 -8.0606 -6.0437 27 6 3.1862 -7.3696 -4.7765 28 6 2.0399 -0.7212 -1.2493 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 3.1300 -0.7217 1.2489 33 1 1.6768 -0.2074 2.1392 34 1 1.8930 -2.6775 2.1394 35 1 0.4400 -2.1637 1.2492 36 1 1.6762 -3.9125 -0.0003 37 1 3.1299 -2.8850 -0.0001 38 1 3.1266 -2.9626 -2.4548 39 1 1.7519 -2.3216 -3.3862 40 1 2.3580 -4.7916 -4.2784 41 1 0.0794 -6.3530 -3.6897 42 1 1.4541 -6.9933 -2.7579 43 1 1.4648 -6.5452 -5.7758 44 1 1.2032 -9.1203 -4.1574 45 1 -0.1050 -8.3495 -5.0868 46 1 1.0369 -10.2119 -6.3432 47 1 1.1499 -8.6381 -7.1723 48 1 6.5076 -11.6210 -7.0842 49 1 3.5722 -7.3968 -6.8989 50 1 4.7549 -8.3049 -5.9247 51 1 3.6847 -6.4074 -4.6595 52 1 3.3963 -7.9960 -3.9095 53 1 3.1300 -0.7209 -1.2496 54 1 1.6766 -0.2074 -2.1393 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330881525.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:14:24 Heat of formation + Delta-G solvation = -75.199193 kcal Electronic energy + Delta-G solvation = -28058.472407 eV Core-core repulsion = 24414.076031 eV Total energy + Delta-G solvation = -3644.396375 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.17371 -39.94715 -39.24916 -36.44734 -34.53271 -34.03035 -32.83439 -32.31402 -31.88897 -29.24080 -27.68991 -27.48323 -25.37131 -24.34867 -23.16249 -22.99840 -22.21979 -21.31082 -20.64120 -19.51001 -18.79958 -17.87996 -17.19638 -16.96985 -16.59182 -16.30802 -15.90814 -15.58429 -15.42669 -15.28337 -15.14117 -15.00109 -14.70206 -14.42735 -14.16076 -14.05325 -13.89061 -13.59223 -13.52033 -13.38945 -12.99438 -12.93679 -12.61821 -12.52822 -12.36234 -12.28481 -12.22305 -12.09947 -11.84235 -11.72434 -11.69922 -11.59374 -11.34566 -11.20657 -11.19463 -10.99152 -10.82962 -10.66003 -10.46193 -9.98536 -8.91621 -8.15849 -5.47335 1.29948 1.42129 1.51729 1.74360 2.30746 2.42628 3.06710 3.37772 3.74421 3.76816 3.80039 3.83354 3.86766 3.99008 4.05744 4.23024 4.32761 4.39282 4.42126 4.43423 4.53700 4.53939 4.59703 4.64923 4.66766 4.72162 4.74251 4.80826 4.81986 4.87051 4.89525 4.89924 5.01709 5.04555 5.08756 5.11222 5.15737 5.18481 5.19610 5.21450 5.27281 5.34601 5.37319 5.45140 5.48954 5.51961 5.60543 5.63796 5.70777 5.87943 6.13229 6.64469 6.93952 7.35640 7.64570 8.04192 9.04311 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.024479 B = 0.002240 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.550950 B =12499.366140 C =12891.618913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.091 4.091 3 H 0.079 0.921 4 C -0.112 4.112 5 C -0.119 4.119 6 C -0.119 4.119 7 C -0.068 4.068 8 H 0.063 0.937 9 C -0.134 4.134 10 C 0.506 3.494 11 O -0.581 6.581 12 N -0.722 5.722 13 C 0.136 3.864 14 C -0.079 4.079 15 C -0.119 4.119 16 C 0.143 3.857 17 N -0.622 5.622 18 C -0.249 4.249 19 H 0.046 0.954 20 C -0.042 4.042 21 N -0.961 5.961 22 Si 0.953 3.047 23 H -0.272 1.272 24 H -0.314 1.314 25 H -0.257 1.257 26 C 0.118 3.882 27 C -0.119 4.119 28 C -0.106 4.106 29 H 0.049 0.951 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.051 0.949 37 H 0.058 0.942 38 H 0.110 0.890 39 H 0.117 0.883 40 H 0.413 0.587 41 H 0.066 0.934 42 H 0.047 0.953 43 H 0.090 0.910 44 H 0.047 0.953 45 H 0.088 0.912 46 H 0.051 0.949 47 H 0.040 0.960 48 H 0.261 0.739 49 H 0.040 0.960 50 H 0.045 0.955 51 H 0.084 0.916 52 H 0.044 0.956 53 H 0.070 0.930 54 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.880 28.177 10.603 31.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.109 4.109 3 H 0.097 0.903 4 C -0.149 4.149 5 C -0.157 4.157 6 C -0.156 4.156 7 C -0.087 4.087 8 H 0.081 0.919 9 C -0.173 4.173 10 C 0.294 3.706 11 O -0.461 6.461 12 N -0.374 5.374 13 C 0.011 3.989 14 C -0.098 4.098 15 C -0.159 4.159 16 C 0.018 3.982 17 N -0.347 5.347 18 C -0.378 4.378 19 H 0.064 0.936 20 C -0.236 4.236 21 N -0.607 5.607 22 Si 0.782 3.218 23 H -0.198 1.198 24 H -0.243 1.243 25 H -0.181 1.181 26 C -0.006 4.006 27 C -0.158 4.158 28 C -0.143 4.143 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.128 0.872 39 H 0.135 0.865 40 H 0.250 0.750 41 H 0.084 0.916 42 H 0.066 0.934 43 H 0.108 0.892 44 H 0.066 0.934 45 H 0.106 0.894 46 H 0.070 0.930 47 H 0.058 0.942 48 H 0.070 0.930 49 H 0.057 0.943 50 H 0.063 0.937 51 H 0.102 0.898 52 H 0.063 0.937 53 H 0.089 0.911 54 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -9.309 27.827 11.179 31.400 hybrid contribution 0.909 -0.492 -0.712 1.255 sum -8.400 27.334 10.467 30.451 Atomic orbital electron populations 1.21937 0.95673 1.01551 1.01701 1.21097 0.95706 0.99363 0.94745 0.90278 1.21562 1.00597 0.94869 0.97897 1.21521 1.00525 0.96224 0.97385 1.21648 0.99943 0.99310 0.94706 1.20886 1.00282 0.94706 0.92810 0.91865 1.21830 1.02857 0.91168 1.01472 1.21339 0.80723 0.88119 0.80427 1.90659 1.38051 1.77679 1.39712 1.46065 1.49212 1.14993 1.27139 1.21220 0.97750 0.82450 0.97439 1.21182 0.94562 0.96427 0.97608 1.21877 1.00153 0.95482 0.98342 1.21118 0.82127 0.98960 0.95973 1.44523 1.02401 1.03546 1.84261 1.18862 0.98266 0.85809 1.34909 0.93585 1.25988 0.97367 0.99594 1.00677 1.69987 1.08995 1.33241 1.48479 0.85805 0.77757 0.79512 0.78720 1.19845 1.24317 1.18136 1.21420 0.95096 0.87675 0.96439 1.21957 0.96100 1.00175 0.97563 1.21610 1.01002 0.93623 0.98062 0.93207 0.92718 0.92392 0.91743 0.91826 0.92706 0.92649 0.93068 0.92318 0.87190 0.86464 0.75028 0.91563 0.93448 0.89170 0.93382 0.89388 0.93025 0.94191 0.93042 0.94264 0.93654 0.89794 0.93669 0.91083 0.90806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 8.50 71.98 0.61 -1.27 16 2 C -0.09 -1.03 3.19 -10.79 -0.03 -1.07 16 3 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 4 C -0.11 -1.43 5.45 30.60 0.17 -1.26 16 5 C -0.12 -1.99 5.65 30.59 0.17 -1.82 16 6 C -0.12 -2.22 4.95 30.59 0.15 -2.07 16 7 C -0.07 -1.05 1.56 -10.79 -0.02 -1.07 16 8 H 0.06 1.22 6.24 -2.39 -0.01 1.21 16 9 C -0.13 -1.80 5.17 29.85 0.15 -1.64 16 10 C 0.51 10.80 7.55 87.66 0.66 11.46 16 11 O -0.58 -17.36 13.97 -3.03 -0.04 -17.40 16 12 N -0.72 -13.84 5.27 -463.06 -2.44 -16.28 16 13 C 0.14 3.17 5.06 86.38 0.44 3.61 16 14 C -0.08 -1.98 2.19 -10.77 -0.02 -2.00 16 15 C -0.12 -3.44 5.36 30.67 0.16 -3.28 16 16 C 0.14 5.24 6.52 86.35 0.56 5.80 16 17 N -0.62 -28.58 2.77 -698.93 -1.94 -30.51 16 18 C -0.25 -14.17 10.04 84.03 0.84 -13.33 16 19 H 0.05 2.90 8.06 -2.91 -0.02 2.88 16 20 C -0.04 -2.47 5.23 84.86 0.44 -2.02 16 21 N -0.96 -60.96 13.97 21.65 0.30 -60.65 16 22 Si 0.95 45.95 24.35 68.60 1.67 47.62 16 23 H -0.27 -12.21 6.62 99.48 0.66 -11.55 16 24 H -0.31 -15.53 7.11 99.48 0.71 -14.82 16 25 H -0.26 -11.64 6.64 99.48 0.66 -10.98 16 26 C 0.12 4.70 4.20 86.36 0.36 5.06 16 27 C -0.12 -3.60 5.25 30.67 0.16 -3.44 16 28 C -0.11 -1.15 4.73 30.60 0.14 -1.01 16 29 H 0.05 0.77 4.81 -2.39 -0.01 0.76 16 30 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 31 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.06 0.74 8.14 -2.39 -0.02 0.73 16 34 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.05 1.01 6.43 -2.39 -0.02 1.00 16 36 H 0.05 1.29 5.95 -2.39 -0.01 1.28 16 37 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.41 5.76 7.65 -92.71 -0.71 5.05 16 41 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 44 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 45 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 46 H 0.05 1.98 7.93 -2.39 -0.02 1.96 16 47 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 48 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 49 H 0.04 1.45 7.08 -2.39 -0.02 1.44 16 50 H 0.05 2.04 4.50 -2.39 -0.01 2.03 16 51 H 0.08 1.98 7.15 -2.39 -0.02 1.97 16 52 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 53 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 54 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 Total: -1.00 -72.02 391.93 2.57 -69.45 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: 0.05 Total: 17.12 kcal Atomic # 6 Polarization: -14.30 SS G_CDS: 4.96 Total: -9.34 kcal Atomic # 7 Polarization: -103.37 SS G_CDS: -4.07 Total: -107.44 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: -0.04 Total: -17.40 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 1.67 Total: 47.62 kcal Total: -72.02 2.57 -69.45 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330881525.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.749 kcal (2) G-P(sol) polarization free energy of solvation -72.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds