Wall clock time and date at job start Tue Mar 31 2020 15:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47027 * 2 1 4 4 C 1.53004 * 109.47013 * 240.00403 * 2 1 3 5 5 C 1.53002 * 109.47013 * 180.02562 * 4 2 1 6 6 C 1.53001 * 109.46981 * 59.99984 * 5 4 2 7 7 C 1.53004 * 109.47260 * 299.99864 * 6 5 4 8 8 H 1.09001 * 109.46895 * 300.00477 * 7 6 5 9 9 C 1.52994 * 109.47614 * 180.02562 * 7 6 5 10 10 C 1.50706 * 109.46999 * 64.99618 * 9 7 6 11 11 O 1.21278 * 119.99864 * 0.02562 * 10 9 7 12 12 N 1.34781 * 119.99562 * 180.02562 * 10 9 7 13 13 C 1.46504 * 119.99503 * 180.02562 * 12 10 9 14 14 C 1.53001 * 109.46828 * 180.02562 * 13 12 10 15 15 C 1.53047 * 109.45840 * 185.00252 * 14 13 12 16 16 C 1.53184 * 109.30881 * 178.62729 * 15 14 13 17 17 N 1.46922 * 108.78090 * 54.63108 * 16 15 14 18 18 C 1.36944 * 120.62724 * 126.36533 * 17 16 15 19 19 H 1.07996 * 119.99883 * 332.24736 * 18 17 16 20 20 C 1.38815 * 119.99550 * 152.25364 * 18 17 16 21 21 N 1.31616 * 119.99546 * 143.92291 * 20 18 17 22 22 Si 1.86793 * 120.00026 * 323.92143 * 20 18 17 23 23 H 1.48508 * 109.47243 * 270.00310 * 22 20 18 24 24 H 1.48499 * 109.47372 * 30.00203 * 22 20 18 25 25 H 1.48499 * 109.47114 * 150.00468 * 22 20 18 26 26 C 1.46926 * 118.73901 * 306.64363 * 17 16 15 27 27 C 1.52760 * 109.00542 * 53.30635 * 26 17 16 28 28 C 1.53001 * 109.46981 * 120.00388 * 2 1 3 29 29 H 1.08998 * 109.47099 * 300.00038 * 1 2 3 30 30 H 1.09004 * 109.46846 * 59.99652 * 1 2 3 31 31 H 1.09000 * 109.46904 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46895 * 299.99678 * 4 2 1 33 33 H 1.08997 * 109.47140 * 59.99617 * 4 2 1 34 34 H 1.08998 * 109.47099 * 179.97438 * 5 4 2 35 35 H 1.08996 * 109.47375 * 300.00244 * 5 4 2 36 36 H 1.09000 * 109.47167 * 180.02562 * 6 5 4 37 37 H 1.09001 * 109.47556 * 59.99936 * 6 5 4 38 38 H 1.09003 * 109.46956 * 305.00418 * 9 7 6 39 39 H 1.08999 * 109.47516 * 185.00282 * 9 7 6 40 40 H 0.96991 * 120.00180 * 0.02562 * 12 10 9 41 41 H 1.08998 * 109.47223 * 60.00428 * 13 12 10 42 42 H 1.09001 * 109.47006 * 300.00052 * 13 12 10 43 43 H 1.09009 * 109.45675 * 304.97208 * 14 13 12 44 44 H 1.09001 * 109.49778 * 58.67192 * 15 14 13 45 45 H 1.08997 * 109.51885 * 298.59019 * 15 14 13 46 46 H 1.09004 * 109.59009 * 294.84174 * 16 15 14 47 47 H 1.09007 * 109.70017 * 174.49269 * 16 15 14 48 48 H 0.97000 * 120.00874 * 354.92255 * 21 20 18 49 49 H 1.09006 * 109.58277 * 173.13948 * 26 17 16 50 50 H 1.08999 * 109.58329 * 293.56746 * 26 17 16 51 51 H 1.09005 * 109.56078 * 185.55286 * 27 26 17 52 52 H 1.09004 * 109.38927 * 65.51960 * 27 26 17 53 53 H 1.08996 * 109.46854 * 59.99940 * 28 2 1 54 54 H 1.08998 * 109.46856 * 299.99723 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7217 -1.2490 6 6 4.0795 -1.4435 0.0002 7 6 3.5695 -0.7223 1.2495 8 1 3.9332 0.3053 1.2498 9 6 4.0794 -1.4435 2.4987 10 6 5.5813 -1.3373 2.5622 11 8 6.1844 -0.7428 1.6940 12 7 6.2543 -1.9030 3.5838 13 6 7.7143 -1.7992 3.6458 14 6 8.2243 -2.5217 4.8944 15 6 9.7341 -2.3079 5.0262 16 6 10.2353 -3.0037 6.2955 17 7 9.8270 -4.4145 6.2542 18 6 10.7508 -5.4130 6.4113 19 1 11.7791 -5.2471 6.1261 20 6 10.3654 -6.6386 6.9370 21 7 10.9125 -7.7484 6.4883 22 14 9.0704 -6.7126 8.2812 23 1 9.7301 -6.6307 9.6092 24 1 8.1292 -5.5747 8.1251 25 1 8.3225 -7.9914 8.1781 26 6 8.4096 -4.7336 6.0349 27 6 7.9280 -4.0182 4.7740 28 6 2.0400 -0.7213 1.2492 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6767 -1.7489 -1.2493 33 1 1.6766 -0.2073 -2.1392 34 1 3.9333 -1.2359 -2.1388 35 1 3.9338 0.3057 -1.2487 36 1 5.1695 -1.4435 0.0007 37 1 3.7158 -2.4710 0.0000 38 1 3.7910 -2.4938 2.4550 39 1 3.6447 -0.9841 3.3865 40 1 5.7720 -2.3787 4.2779 41 1 8.0024 -0.7489 3.6903 42 1 8.1492 -2.2580 2.7579 43 1 7.7226 -2.1219 5.7757 44 1 9.9462 -1.2405 5.0884 45 1 10.2388 -2.7291 4.1568 46 1 9.8004 -2.5230 7.1718 47 1 11.3223 -2.9392 6.3451 48 1 11.5299 -7.7172 5.7408 49 1 8.2926 -5.8101 5.9099 50 1 7.8229 -4.3968 6.8894 51 1 6.8547 -4.1683 4.6567 52 1 8.4489 -4.4237 3.9065 53 1 1.6766 -1.7490 1.2491 54 1 1.6767 -0.2075 2.1392 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330881526.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:14:28 Heat of formation + Delta-G solvation = -80.537295 kcal Electronic energy + Delta-G solvation = -27844.785976 eV Core-core repulsion = 24200.158123 eV Total energy + Delta-G solvation = -3644.627853 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.12223 -39.81724 -39.12453 -36.44740 -34.62573 -34.26095 -32.90244 -32.50915 -31.84880 -29.20399 -27.55795 -27.10271 -25.11951 -24.24107 -23.02021 -22.65956 -21.98405 -21.19031 -20.62937 -20.60356 -19.33204 -17.93685 -16.95842 -16.62058 -16.52944 -16.09753 -16.02522 -15.71529 -15.48266 -15.25390 -15.07589 -14.93493 -14.81110 -14.45116 -14.10882 -14.03412 -13.79696 -13.68679 -13.27212 -13.21856 -13.10310 -12.94631 -12.66926 -12.45240 -12.41465 -12.15921 -12.14514 -11.85219 -11.79947 -11.73004 -11.65736 -11.39004 -11.32056 -11.26552 -11.19227 -11.07370 -10.82748 -10.51754 -10.40171 -10.00127 -8.99390 -8.57547 -5.41782 1.52737 1.58980 1.73357 1.78113 2.29425 2.61751 2.96951 3.50398 3.72320 3.75146 3.80143 3.81430 3.88819 3.98851 4.05885 4.18885 4.33870 4.38790 4.41627 4.47341 4.54399 4.57693 4.60141 4.64212 4.65741 4.74094 4.80185 4.81532 4.81768 4.85972 4.92355 4.96719 4.99622 5.04519 5.06015 5.12091 5.13513 5.19362 5.22749 5.23436 5.28102 5.31939 5.36840 5.45306 5.48807 5.50227 5.58048 5.62654 5.67828 5.85018 6.28033 6.64063 6.93694 7.34957 7.67132 8.16496 8.79024 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.023052 B = 0.002171 C = 0.002104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.338581 B =12896.342506 C =13302.283243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.093 4.093 3 H 0.061 0.939 4 C -0.110 4.110 5 C -0.118 4.118 6 C -0.119 4.119 7 C -0.067 4.067 8 H 0.057 0.943 9 C -0.132 4.132 10 C 0.505 3.495 11 O -0.582 6.582 12 N -0.720 5.720 13 C 0.136 3.864 14 C -0.077 4.077 15 C -0.119 4.119 16 C 0.140 3.860 17 N -0.616 5.616 18 C -0.351 4.351 19 H 0.021 0.979 20 C -0.053 4.053 21 N -0.937 5.937 22 Si 1.067 2.933 23 H -0.299 1.299 24 H -0.229 1.229 25 H -0.299 1.299 26 C 0.136 3.864 27 C -0.122 4.122 28 C -0.104 4.104 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.050 0.950 36 H 0.051 0.949 37 H 0.060 0.940 38 H 0.111 0.889 39 H 0.119 0.881 40 H 0.414 0.586 41 H 0.065 0.935 42 H 0.044 0.956 43 H 0.093 0.907 44 H 0.085 0.915 45 H 0.041 0.959 46 H 0.040 0.960 47 H 0.041 0.959 48 H 0.250 0.750 49 H 0.039 0.961 50 H 0.049 0.951 51 H 0.085 0.915 52 H 0.036 0.964 53 H 0.071 0.929 54 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.963 17.551 -9.830 31.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 H 0.080 0.920 4 C -0.148 4.148 5 C -0.155 4.155 6 C -0.157 4.157 7 C -0.086 4.086 8 H 0.075 0.925 9 C -0.172 4.172 10 C 0.294 3.706 11 O -0.463 6.463 12 N -0.373 5.373 13 C 0.011 3.989 14 C -0.096 4.096 15 C -0.158 4.158 16 C 0.015 3.985 17 N -0.341 5.341 18 C -0.480 4.480 19 H 0.039 0.961 20 C -0.251 4.251 21 N -0.577 5.577 22 Si 0.892 3.108 23 H -0.227 1.227 24 H -0.153 1.153 25 H -0.226 1.226 26 C 0.011 3.989 27 C -0.161 4.161 28 C -0.141 4.141 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.130 0.870 39 H 0.137 0.863 40 H 0.251 0.749 41 H 0.083 0.917 42 H 0.062 0.938 43 H 0.111 0.889 44 H 0.103 0.897 45 H 0.059 0.941 46 H 0.058 0.942 47 H 0.059 0.941 48 H 0.059 0.941 49 H 0.057 0.943 50 H 0.066 0.934 51 H 0.104 0.896 52 H 0.055 0.945 53 H 0.089 0.911 54 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -24.288 16.964 -9.430 31.091 hybrid contribution 1.959 0.237 -0.993 2.209 sum -22.330 17.201 -10.423 30.052 Atomic orbital electron populations 1.21804 0.94326 1.02089 1.01939 1.21124 0.95993 0.99209 0.94822 0.92044 1.21586 0.94471 1.00883 0.97851 1.21490 0.96405 1.00112 0.97538 1.21662 1.00455 0.98906 0.94661 1.20835 0.95784 0.98963 0.92979 0.92480 1.21816 0.89306 1.04666 1.01380 1.21364 0.91550 0.77314 0.80406 1.90659 1.71616 1.44211 1.39787 1.46047 1.07476 1.56597 1.27167 1.21209 0.80274 0.99933 0.97435 1.21166 0.96122 0.94742 0.97587 1.21864 0.95156 1.00543 0.98252 1.21088 0.97650 0.83921 0.95846 1.44429 1.04210 1.01529 1.83950 1.19880 0.92032 0.94564 1.41531 0.96080 1.27328 1.04326 0.90809 1.02600 1.71008 1.31333 1.28765 1.26620 0.83994 0.75439 0.76735 0.74679 1.22685 1.15269 1.22622 1.21392 0.84120 0.97543 0.95826 1.21949 1.00880 0.95303 0.97994 1.21617 0.93043 1.01429 0.98007 0.92209 0.92642 0.92381 0.91727 0.91842 0.92459 0.93117 0.93073 0.92147 0.87038 0.86305 0.74906 0.91697 0.93767 0.88926 0.89686 0.94058 0.94173 0.94062 0.94100 0.94277 0.93378 0.89614 0.94524 0.91056 0.90756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.19 71.98 0.66 -0.68 16 2 C -0.09 -1.10 2.72 -10.79 -0.03 -1.13 16 3 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 4 C -0.11 -1.45 5.20 30.60 0.16 -1.29 16 5 C -0.12 -2.01 5.92 30.60 0.18 -1.83 16 6 C -0.12 -2.27 4.95 30.60 0.15 -2.11 16 7 C -0.07 -1.05 1.83 -10.81 -0.02 -1.07 16 8 H 0.06 1.13 7.95 -2.39 -0.02 1.12 16 9 C -0.13 -1.78 5.18 29.85 0.15 -1.63 16 10 C 0.51 10.94 7.55 87.66 0.66 11.60 16 11 O -0.58 -17.72 13.97 -3.02 -0.04 -17.76 16 12 N -0.72 -14.00 5.27 -463.04 -2.44 -16.44 16 13 C 0.14 3.27 5.06 86.38 0.44 3.70 16 14 C -0.08 -1.98 2.19 -10.77 -0.02 -2.01 16 15 C -0.12 -3.58 5.36 30.67 0.16 -3.41 16 16 C 0.14 5.27 6.52 86.36 0.56 5.84 16 17 N -0.62 -28.46 2.72 -699.92 -1.90 -30.36 16 18 C -0.35 -20.01 9.70 84.03 0.82 -19.19 16 19 H 0.02 1.35 8.06 -2.91 -0.02 1.33 16 20 C -0.05 -3.10 4.82 84.86 0.41 -2.69 16 21 N -0.94 -59.37 13.70 21.65 0.30 -59.07 16 22 Si 1.07 50.09 27.01 68.60 1.85 51.95 16 23 H -0.30 -13.98 7.11 99.48 0.71 -13.28 16 24 H -0.23 -9.11 4.73 99.48 0.47 -8.64 16 25 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 26 C 0.14 5.35 4.34 86.22 0.37 5.73 16 27 C -0.12 -3.74 5.23 30.53 0.16 -3.58 16 28 C -0.10 -1.16 4.48 30.58 0.14 -1.02 16 29 H 0.06 0.49 8.14 -2.39 -0.02 0.48 16 30 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.06 0.96 8.14 -2.39 -0.02 0.95 16 35 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.05 1.31 5.95 -2.39 -0.01 1.29 16 37 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.41 5.76 7.65 -92.71 -0.71 5.06 16 41 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.09 2.06 8.14 -2.38 -0.02 2.04 16 44 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 45 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 46 H 0.04 1.37 8.14 -2.38 -0.02 1.35 16 47 H 0.04 1.66 7.93 -2.38 -0.02 1.64 16 48 H 0.25 16.07 8.73 -92.71 -0.81 15.26 16 49 H 0.04 1.74 5.83 -2.38 -0.01 1.72 16 50 H 0.05 1.73 6.60 -2.39 -0.02 1.71 16 51 H 0.09 2.02 7.15 -2.38 -0.02 2.00 16 52 H 0.04 1.31 8.14 -2.38 -0.02 1.29 16 53 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 54 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -72.25 400.54 2.58 -69.68 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: -0.15 Total: 16.78 kcal Atomic # 6 Polarization: -19.73 SS G_CDS: 4.96 Total: -14.77 kcal Atomic # 7 Polarization: -101.82 SS G_CDS: -4.04 Total: -105.87 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: -0.04 Total: -17.76 kcal Atomic # 14 Polarization: 50.09 SS G_CDS: 1.85 Total: 51.95 kcal Total: -72.25 2.58 -69.68 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330881526.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.862 kcal (2) G-P(sol) polarization free energy of solvation -72.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds