Wall clock time and date at job start Tue Mar 31 2020 15:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09005 * 109.47050 * 2 1 4 4 C 1.52991 * 109.47301 * 239.99195 * 2 1 3 5 5 C 1.53007 * 109.47301 * 179.97438 * 4 2 1 6 6 C 1.53001 * 109.46829 * 59.99877 * 5 4 2 7 7 C 1.53004 * 109.47210 * 300.00340 * 6 5 4 8 8 H 1.09002 * 109.46687 * 180.02562 * 7 6 5 9 9 N 1.46496 * 109.47044 * 299.99755 * 7 6 5 10 10 C 1.34783 * 120.00238 * 275.00324 * 9 7 6 11 11 O 1.21275 * 119.99671 * 0.02562 * 10 9 7 12 12 C 1.50700 * 119.99889 * 180.02562 * 10 9 7 13 13 N 1.46903 * 109.46989 * 174.98501 * 12 10 9 14 14 C 1.46901 * 110.99767 * 283.57867 * 13 12 10 15 15 C 1.50703 * 109.46700 * 170.00181 * 14 13 12 16 16 H 1.07996 * 120.00319 * 359.97438 * 15 14 13 17 17 C 1.37881 * 119.99405 * 179.97438 * 15 14 13 18 18 N 1.31507 * 120.00298 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99421 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47140 * 60.00029 * 19 17 15 21 21 H 1.48507 * 109.46900 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.46975 * 299.99457 * 19 17 15 23 23 C 1.46894 * 110.99795 * 159.62346 * 13 12 10 24 24 C 1.53004 * 109.47144 * 288.07541 * 23 13 12 25 25 C 1.52996 * 117.50288 * 245.52074 * 24 23 13 26 26 C 1.52994 * 60.00262 * 252.51313 * 25 24 23 27 27 C 1.52998 * 109.47109 * 60.00035 * 7 6 5 28 28 H 1.09002 * 109.47054 * 60.00121 * 27 7 6 29 29 C 1.52997 * 109.46945 * 179.97438 * 27 7 6 30 30 H 1.08997 * 109.46789 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47161 * 300.00722 * 1 2 3 32 32 H 1.09001 * 109.46384 * 60.00667 * 1 2 3 33 33 H 1.09001 * 109.47289 * 60.00692 * 4 2 1 34 34 H 1.08997 * 109.47648 * 300.00024 * 4 2 1 35 35 H 1.08997 * 109.46789 * 300.00550 * 5 4 2 36 36 H 1.08995 * 109.47161 * 180.02562 * 5 4 2 37 37 H 1.08999 * 109.46879 * 180.02562 * 6 5 4 38 38 H 1.09002 * 109.47240 * 60.00394 * 6 5 4 39 39 H 0.97005 * 120.00122 * 94.99985 * 9 7 6 40 40 H 1.08998 * 109.47264 * 54.98136 * 12 10 9 41 41 H 1.09001 * 109.47115 * 294.98312 * 12 10 9 42 42 H 1.09006 * 109.46663 * 289.99561 * 14 13 12 43 43 H 1.08993 * 109.47491 * 49.99652 * 14 13 12 44 44 H 0.97000 * 120.00455 * 179.97438 * 18 17 15 45 45 H 1.09002 * 109.47603 * 48.08094 * 23 13 12 46 46 H 1.09004 * 109.47296 * 168.07893 * 23 13 12 47 47 H 1.09000 * 115.54621 * 31.23465 * 24 23 13 48 48 H 1.09004 * 117.49548 * 359.97438 * 25 24 23 49 49 H 1.08997 * 117.49998 * 145.02038 * 25 24 23 50 50 H 1.09003 * 117.49701 * 252.50953 * 26 25 24 51 51 H 1.08998 * 117.52092 * 107.47808 * 26 25 24 52 52 H 1.09009 * 109.47016 * 59.99937 * 29 27 7 53 53 H 1.09005 * 109.47383 * 179.97438 * 29 27 7 54 54 H 1.08997 * 109.47425 * 300.00251 * 29 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7214 -1.2490 5 6 3.5702 -0.7208 -1.2494 6 6 4.0806 -1.4415 0.0000 7 6 3.5705 -0.7201 1.2492 8 1 3.9346 -1.2333 2.1392 9 7 4.0583 0.6613 1.2487 10 6 5.2804 0.9446 1.7417 11 8 5.9762 0.0559 2.1852 12 6 5.7819 2.3657 1.7417 13 7 7.0760 2.4282 2.4342 14 6 6.8978 2.3552 3.8905 15 6 8.2397 2.1749 4.5523 16 1 9.1352 2.1196 3.9512 17 6 8.3240 2.0805 5.9253 18 7 7.2336 2.1483 6.6573 19 14 9.9872 1.8562 6.7455 20 1 10.8636 3.0073 6.4105 21 1 9.8073 1.7838 8.2179 22 1 10.6129 0.5999 6.2605 23 6 7.8182 3.6377 2.0546 24 6 8.3266 3.4944 0.6186 25 6 9.8407 3.4291 0.4084 26 6 9.0664 4.6867 0.0088 27 6 2.0405 -0.7207 1.2494 28 1 1.6776 -1.7485 1.2497 29 6 1.5305 0.0001 2.4988 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3632 0.5138 -0.8901 33 1 1.6769 -0.2076 -2.1391 34 1 1.6768 -1.7490 -1.2490 35 1 3.9330 0.3070 -1.2496 36 1 3.9335 -1.2343 -2.1395 37 1 5.1706 -1.4407 0.0000 38 1 3.7177 -2.4693 0.0004 39 1 3.5019 1.3721 0.8936 40 1 5.0636 3.0045 2.2556 41 1 5.9028 2.7083 0.7141 42 1 6.4378 3.2770 4.2469 43 1 6.2550 1.5099 4.1360 44 1 7.2928 2.0815 7.6232 45 1 7.1603 4.5041 2.1223 46 1 8.6648 3.7708 2.7281 47 1 7.6999 2.8982 -0.0446 48 1 10.4746 3.4888 1.2931 49 1 10.2104 2.7898 -0.3932 50 1 8.9268 4.8748 -1.0558 51 1 9.1906 5.5734 0.6305 52 1 1.8935 1.0280 2.4989 53 1 0.4404 0.0002 2.4988 54 1 1.8942 -0.5136 3.3887 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348546100.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:12 Heat of formation + Delta-G solvation = -49.212657 kcal Electronic energy + Delta-G solvation = -28959.156047 eV Core-core repulsion = 25315.886533 eV Total energy + Delta-G solvation = -3643.269515 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -41.42262 -39.78513 -38.65961 -36.71545 -34.97415 -34.59717 -33.92365 -32.03096 -29.85841 -28.94391 -27.91866 -26.52718 -25.93460 -23.30677 -23.11862 -22.72081 -22.04550 -21.58254 -20.85209 -19.88266 -18.60247 -18.22802 -17.05582 -16.87997 -16.48397 -16.29930 -15.89308 -15.62383 -15.52722 -15.23506 -15.07086 -14.73177 -14.60530 -14.32599 -14.16704 -13.94522 -13.68767 -13.32712 -13.29247 -13.00255 -12.96102 -12.72204 -12.71590 -12.61273 -12.59644 -12.36101 -12.29512 -12.27995 -12.08948 -11.87871 -11.71760 -11.34653 -11.30629 -11.12690 -11.01453 -10.84883 -10.76234 -10.64581 -10.56612 -9.88946 -8.94538 -8.19952 -6.28131 1.36306 1.41318 1.48518 1.83969 2.22954 2.40056 2.95191 3.12874 3.39202 3.65945 3.75951 3.79347 3.93364 4.01109 4.10281 4.11696 4.21166 4.23383 4.37504 4.40716 4.46389 4.49245 4.54295 4.59891 4.62931 4.66445 4.76069 4.79767 4.83053 4.87140 4.88593 4.93358 5.04318 5.09511 5.10159 5.13694 5.17040 5.17858 5.24394 5.28941 5.32108 5.34754 5.41236 5.42355 5.44592 5.55031 5.60683 5.63793 5.72141 6.06416 6.37966 6.51817 6.78702 6.86176 7.39736 7.50940 8.91399 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.011748 B = 0.003600 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2382.748234 B = 7775.159964 C = 9290.611781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 H 0.070 0.930 4 C -0.107 4.107 5 C -0.112 4.112 6 C -0.126 4.126 7 C 0.151 3.849 8 H 0.046 0.954 9 N -0.710 5.710 10 C 0.509 3.491 11 O -0.562 6.562 12 C 0.036 3.964 13 N -0.529 5.529 14 C 0.220 3.780 15 C -0.517 4.517 16 H 0.057 0.943 17 C 0.001 3.999 18 N -0.935 5.935 19 Si 0.966 3.034 20 H -0.262 1.262 21 H -0.280 1.280 22 H -0.275 1.275 23 C 0.096 3.904 24 C -0.152 4.152 25 C -0.185 4.185 26 C -0.157 4.157 27 C -0.082 4.082 28 H 0.091 0.909 29 C -0.149 4.149 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.058 0.942 36 H 0.067 0.933 37 H 0.035 0.965 38 H 0.078 0.922 39 H 0.408 0.592 40 H 0.061 0.939 41 H 0.126 0.874 42 H -0.037 1.037 43 H -0.003 1.003 44 H 0.263 0.737 45 H 0.033 0.967 46 H 0.060 0.940 47 H 0.106 0.894 48 H 0.078 0.922 49 H 0.101 0.899 50 H 0.116 0.884 51 H 0.094 0.906 52 H 0.049 0.951 53 H 0.078 0.922 54 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.429 -0.275 -19.689 23.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.102 4.102 3 H 0.088 0.912 4 C -0.145 4.145 5 C -0.149 4.149 6 C -0.164 4.164 7 C 0.046 3.954 8 H 0.064 0.936 9 N -0.365 5.365 10 C 0.296 3.704 11 O -0.439 6.439 12 C -0.096 4.096 13 N -0.253 5.253 14 C 0.093 3.907 15 C -0.556 4.556 16 H 0.076 0.924 17 C -0.196 4.196 18 N -0.576 5.576 19 Si 0.790 3.210 20 H -0.187 1.187 21 H -0.205 1.205 22 H -0.201 1.201 23 C -0.031 4.031 24 C -0.171 4.171 25 C -0.222 4.222 26 C -0.194 4.194 27 C -0.101 4.101 28 H 0.109 0.891 29 C -0.206 4.206 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.054 0.946 38 H 0.097 0.903 39 H 0.246 0.754 40 H 0.079 0.921 41 H 0.144 0.856 42 H -0.019 1.019 43 H 0.015 0.985 44 H 0.072 0.928 45 H 0.051 0.949 46 H 0.078 0.922 47 H 0.124 0.876 48 H 0.096 0.904 49 H 0.119 0.881 50 H 0.134 0.866 51 H 0.113 0.887 52 H 0.068 0.932 53 H 0.097 0.903 54 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -12.712 -1.323 -19.319 23.164 hybrid contribution 0.266 0.543 1.389 1.515 sum -12.446 -0.780 -17.930 21.840 Atomic orbital electron populations 1.21857 0.93861 1.02295 1.02252 1.21145 0.96499 0.99202 0.93388 0.91194 1.21578 0.94099 1.01214 0.97589 1.21455 0.96553 1.00488 0.96450 1.21851 0.99502 0.99903 0.95184 1.20905 0.94650 0.82221 0.97604 0.93572 1.45904 1.16780 1.10161 1.63696 1.20976 0.81527 0.91420 0.76502 1.90710 1.57405 1.49641 1.46144 1.22029 0.92365 0.93063 1.02112 1.61578 1.16801 1.38759 1.08170 1.19257 0.96028 0.92678 0.82691 1.21385 0.93739 1.48808 0.91619 0.92442 1.25876 1.00691 0.95066 0.98015 1.70076 1.29744 1.51898 1.05855 0.85499 0.79406 0.79026 0.77075 1.18699 1.20509 1.20053 1.21547 0.97437 0.89452 0.94706 1.22200 0.95420 1.03321 0.96119 1.22985 0.94134 1.01997 1.03110 1.23028 1.02670 0.91798 1.01946 1.21383 0.91496 1.01407 0.95816 0.89123 1.21884 1.01963 1.00224 0.96569 0.92296 0.92303 0.91785 0.90531 0.91351 0.92325 0.91471 0.94573 0.90339 0.75423 0.92146 0.85626 1.01912 0.98520 0.92815 0.94869 0.92165 0.87599 0.90360 0.88098 0.86551 0.88735 0.93162 0.90279 0.94641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 8.84 71.98 0.64 -0.92 16 2 C -0.08 -1.12 2.08 -10.79 -0.02 -1.14 16 3 H 0.07 0.93 6.50 -2.38 -0.02 0.92 16 4 C -0.11 -1.36 5.20 30.59 0.16 -1.20 16 5 C -0.11 -1.91 5.77 30.60 0.18 -1.73 16 6 C -0.13 -2.92 5.60 30.60 0.17 -2.75 16 7 C 0.15 3.89 2.23 44.99 0.10 3.99 16 8 H 0.05 1.57 7.58 -2.39 -0.02 1.56 16 9 N -0.71 -19.18 3.54 -442.54 -1.57 -20.75 16 10 C 0.51 19.35 7.36 87.66 0.65 19.99 16 11 O -0.56 -28.21 15.20 -3.01 -0.05 -28.26 16 12 C 0.04 1.27 5.27 85.56 0.45 1.72 16 13 N -0.53 -24.16 3.97 -905.35 -3.60 -27.75 16 14 C 0.22 12.54 4.36 85.56 0.37 12.91 16 15 C -0.52 -31.50 8.28 25.60 0.21 -31.29 16 16 H 0.06 3.47 7.26 -2.91 -0.02 3.45 16 17 C 0.00 0.06 5.46 84.66 0.46 0.53 16 18 N -0.93 -59.30 13.29 21.45 0.28 -59.01 16 19 Si 0.97 47.11 29.54 68.60 2.03 49.14 16 20 H -0.26 -12.06 7.11 99.48 0.71 -11.35 16 21 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 22 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 23 C 0.10 3.77 5.08 86.31 0.44 4.20 16 24 C -0.15 -4.65 5.58 -10.79 -0.06 -4.71 16 25 C -0.19 -5.33 10.18 30.59 0.31 -5.02 16 26 C -0.16 -3.71 10.25 30.59 0.31 -3.40 16 27 C -0.08 -1.49 2.04 -10.79 -0.02 -1.52 16 28 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 29 C -0.15 -2.99 8.68 71.98 0.63 -2.36 16 30 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.06 0.65 6.43 -2.39 -0.02 0.64 16 32 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.08 0.78 8.14 -2.39 -0.02 0.77 16 34 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.06 1.05 7.60 -2.39 -0.02 1.03 16 36 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.41 8.29 6.65 -92.70 -0.62 7.67 16 40 H 0.06 2.05 7.99 -2.39 -0.02 2.03 16 41 H 0.13 3.45 6.44 -2.39 -0.02 3.44 16 42 H -0.04 -2.20 8.12 -2.38 -0.02 -2.21 16 43 H 0.00 -0.21 6.93 -2.39 -0.02 -0.23 16 44 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 45 H 0.03 1.21 8.05 -2.39 -0.02 1.19 16 46 H 0.06 2.71 6.33 -2.38 -0.02 2.69 16 47 H 0.11 3.07 6.87 -2.39 -0.02 3.06 16 48 H 0.08 2.51 8.04 -2.38 -0.02 2.49 16 49 H 0.10 2.58 8.14 -2.39 -0.02 2.57 16 50 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16 51 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 52 H 0.05 1.07 7.45 -2.38 -0.02 1.05 16 53 H 0.08 1.24 6.43 -2.38 -0.02 1.22 16 54 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -77.64 409.81 2.31 -75.33 By element: Atomic # 1 Polarization: 23.77 SS G_CDS: 0.24 Total: 24.01 kcal Atomic # 6 Polarization: -17.68 SS G_CDS: 4.97 Total: -12.71 kcal Atomic # 7 Polarization: -102.64 SS G_CDS: -4.88 Total: -107.52 kcal Atomic # 8 Polarization: -28.21 SS G_CDS: -0.05 Total: -28.26 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 2.03 Total: 49.14 kcal Total: -77.64 2.31 -75.33 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348546100.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.119 kcal (2) G-P(sol) polarization free energy of solvation -77.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds