Wall clock time and date at job start Tue Mar 31 2020 15:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47076 * 2 1 4 4 C 1.52997 * 109.47245 * 239.99804 * 2 1 3 5 5 C 1.53002 * 109.47448 * 179.97438 * 4 2 1 6 6 C 1.53001 * 109.46862 * 60.00141 * 5 4 2 7 7 C 1.53002 * 109.47465 * 300.00092 * 6 5 4 8 8 H 1.09008 * 109.46700 * 300.00668 * 7 6 5 9 9 N 1.46493 * 109.47800 * 179.97438 * 7 6 5 10 10 C 1.34782 * 119.99594 * 89.09768 * 9 7 6 11 11 O 1.21271 * 120.00196 * 4.99958 * 10 9 7 12 12 C 1.50704 * 119.99416 * 184.99871 * 10 9 7 13 13 N 1.46907 * 109.46877 * 175.88873 * 12 10 9 14 14 C 1.46896 * 110.99801 * 72.95098 * 13 12 10 15 15 C 1.50704 * 109.47177 * 190.00027 * 14 13 12 16 16 H 1.07996 * 119.99897 * 0.02562 * 15 14 13 17 17 C 1.37878 * 120.00133 * 180.02562 * 15 14 13 18 18 N 1.31512 * 119.99707 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99920 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.46983 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.46662 * 120.00256 * 19 17 15 22 22 H 1.48501 * 109.47261 * 239.99992 * 19 17 15 23 23 C 1.46899 * 111.00058 * 196.90393 * 13 12 10 24 24 C 1.53004 * 109.46584 * 75.42220 * 23 13 12 25 25 C 1.53006 * 117.49790 * 244.94667 * 24 23 13 26 26 C 1.53005 * 117.49355 * 176.29254 * 24 23 13 27 27 C 1.53001 * 109.47209 * 119.99857 * 2 1 3 28 28 H 1.08995 * 109.47492 * 60.00191 * 27 2 1 29 29 C 1.53004 * 109.47116 * 299.99636 * 27 2 1 30 30 H 1.09001 * 109.46625 * 300.00455 * 1 2 3 31 31 H 1.08997 * 109.47367 * 60.00004 * 1 2 3 32 32 H 1.08995 * 109.46737 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.46978 * 300.00116 * 4 2 1 34 34 H 1.09004 * 109.46995 * 60.00123 * 4 2 1 35 35 H 1.09002 * 109.47324 * 179.97438 * 5 4 2 36 36 H 1.08997 * 109.47371 * 300.00176 * 5 4 2 37 37 H 1.09005 * 109.47275 * 179.97438 * 6 5 4 38 38 H 1.09001 * 109.47428 * 59.99527 * 6 5 4 39 39 H 0.96999 * 120.00061 * 269.10810 * 9 7 6 40 40 H 1.09003 * 109.47066 * 55.89171 * 12 10 9 41 41 H 1.08995 * 109.47591 * 295.88922 * 12 10 9 42 42 H 1.08998 * 109.47227 * 310.00160 * 14 13 12 43 43 H 1.09000 * 109.47121 * 70.00094 * 14 13 12 44 44 H 0.97007 * 119.99786 * 179.97438 * 18 17 15 45 45 H 1.08996 * 109.47436 * 315.42438 * 23 13 12 46 46 H 1.08996 * 109.47322 * 195.41934 * 23 13 12 47 47 H 1.08997 * 115.55487 * 30.62534 * 24 23 13 48 48 H 1.08996 * 117.49784 * 0.02562 * 25 24 23 49 49 H 1.08999 * 117.49539 * 145.02468 * 25 24 23 50 50 H 1.09007 * 117.49404 * 214.98073 * 26 24 23 51 51 H 1.08997 * 117.50158 * 359.96904 * 26 24 23 52 52 H 1.08997 * 109.47296 * 300.00075 * 29 27 2 53 53 H 1.09005 * 109.46885 * 59.99962 * 29 27 2 54 54 H 1.08997 * 109.46924 * 180.02562 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5700 -0.7207 -1.2496 6 6 4.0805 -1.4416 -0.0003 7 6 3.5705 -0.7204 1.2490 8 1 3.9335 0.3075 1.2487 9 7 4.0588 -1.4109 2.4452 10 6 5.2450 -1.0670 2.9848 11 8 5.8657 -0.1269 2.5358 12 6 5.8000 -1.8508 4.1462 13 7 7.1370 -1.3445 4.4843 14 6 7.0525 -0.0349 5.1443 15 6 8.4318 0.5623 5.2540 16 1 9.2857 0.0230 4.8714 17 6 8.6036 1.7970 5.8430 18 7 7.5639 2.4535 6.3094 19 14 10.3134 2.5368 5.9796 20 1 11.3048 1.6055 5.3839 21 1 10.3521 3.8313 5.2530 22 1 10.6425 2.7621 7.4101 23 6 7.8694 -2.3076 5.3174 24 6 8.3571 -3.4674 4.4468 25 6 7.7745 -4.8543 4.7265 26 6 9.2207 -4.5385 5.1162 27 6 2.0400 -0.7212 1.2493 28 1 1.6768 -1.7489 1.2493 29 6 1.5301 0.0001 2.4985 30 1 -0.3632 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3632 -1.0276 0.0005 33 1 1.6767 -1.7489 -1.2491 34 1 1.6767 -0.2074 -2.1392 35 1 3.9334 -1.2350 -2.1393 36 1 3.9330 0.3070 -1.2498 37 1 5.1706 -1.4417 -0.0007 38 1 3.7175 -2.4694 0.0000 39 1 3.5284 -2.1157 2.8487 40 1 5.8685 -2.9041 3.8740 41 1 5.1411 -1.7401 5.0073 42 1 6.4156 0.6272 4.5577 43 1 6.6291 -0.1571 6.1412 44 1 7.6848 3.3220 6.7241 45 1 7.2096 -2.6902 6.0960 46 1 8.7253 -1.8133 5.7769 47 1 8.5814 -3.2154 3.4104 48 1 7.0434 -4.9403 5.5304 49 1 7.6158 -5.5147 3.8740 50 1 10.0129 -4.9913 4.5199 51 1 9.4418 -4.4166 6.1765 52 1 1.8934 1.0278 2.4985 53 1 0.4400 0.0002 2.4985 54 1 1.8938 -0.5134 3.3885 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348546101.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:17 Heat of formation + Delta-G solvation = -53.748098 kcal Electronic energy + Delta-G solvation = -28647.592632 eV Core-core repulsion = 25004.126446 eV Total energy + Delta-G solvation = -3643.466186 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.24038 -39.81490 -38.71744 -36.70167 -35.37522 -34.57000 -33.98418 -31.83174 -29.80903 -28.96352 -27.86012 -26.51885 -25.87319 -23.44316 -23.07839 -22.30081 -21.99326 -21.43288 -21.09700 -20.44560 -18.60945 -18.03897 -17.24635 -16.82222 -16.46966 -16.19088 -15.69227 -15.62284 -15.49019 -15.42235 -15.09363 -14.93666 -14.71803 -14.38144 -14.04926 -13.71545 -13.65592 -13.51386 -13.27850 -13.04693 -12.94648 -12.73856 -12.66455 -12.60886 -12.53004 -12.38998 -12.27482 -12.14435 -12.00364 -11.91565 -11.76588 -11.36501 -11.31433 -11.27556 -11.09715 -11.01165 -10.72542 -10.65092 -10.45524 -9.88989 -8.97603 -8.19293 -6.27044 1.36176 1.38824 1.51953 1.81600 2.19941 2.40366 2.98374 3.13269 3.32152 3.62559 3.76031 3.85329 4.01338 4.03211 4.09508 4.14871 4.17510 4.21394 4.32502 4.41732 4.45863 4.47043 4.52500 4.53066 4.56095 4.68248 4.73978 4.83482 4.86582 4.87133 4.94629 4.98086 4.99469 5.07066 5.08690 5.13728 5.16965 5.18488 5.24839 5.27156 5.33894 5.35969 5.37524 5.39123 5.45807 5.52423 5.59925 5.64760 5.70850 6.08816 6.40131 6.53102 6.79151 6.88004 7.40587 7.50026 8.92673 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.010784 B = 0.003459 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2595.782475 B = 8093.474940 C = 9674.573562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.086 4.086 3 H 0.052 0.948 4 C -0.107 4.107 5 C -0.117 4.117 6 C -0.121 4.121 7 C 0.150 3.850 8 H 0.045 0.955 9 N -0.715 5.715 10 C 0.509 3.491 11 O -0.563 6.563 12 C 0.041 3.959 13 N -0.531 5.531 14 C 0.214 3.786 15 C -0.514 4.514 16 H 0.058 0.942 17 C -0.002 4.002 18 N -0.936 5.936 19 Si 0.967 3.033 20 H -0.264 1.264 21 H -0.282 1.282 22 H -0.272 1.272 23 C 0.097 3.903 24 C -0.158 4.158 25 C -0.164 4.164 26 C -0.175 4.175 27 C -0.080 4.080 28 H 0.098 0.902 29 C -0.149 4.149 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.044 0.956 37 H 0.034 0.966 38 H 0.084 0.916 39 H 0.412 0.588 40 H 0.127 0.873 41 H 0.060 0.940 42 H 0.007 0.993 43 H -0.041 1.041 44 H 0.262 0.738 45 H 0.033 0.967 46 H 0.060 0.940 47 H 0.093 0.907 48 H 0.099 0.901 49 H 0.108 0.892 50 H 0.104 0.896 51 H 0.093 0.907 52 H 0.030 0.970 53 H 0.079 0.921 54 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.657 -15.536 -11.413 24.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.105 4.105 3 H 0.071 0.929 4 C -0.144 4.144 5 C -0.155 4.155 6 C -0.160 4.160 7 C 0.045 3.955 8 H 0.063 0.937 9 N -0.369 5.369 10 C 0.295 3.705 11 O -0.440 6.440 12 C -0.091 4.091 13 N -0.255 5.255 14 C 0.088 3.912 15 C -0.553 4.553 16 H 0.076 0.924 17 C -0.199 4.199 18 N -0.577 5.577 19 Si 0.792 3.208 20 H -0.188 1.188 21 H -0.208 1.208 22 H -0.198 1.198 23 C -0.030 4.030 24 C -0.177 4.177 25 C -0.201 4.201 26 C -0.212 4.212 27 C -0.098 4.098 28 H 0.117 0.883 29 C -0.206 4.206 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.063 0.937 37 H 0.053 0.947 38 H 0.103 0.897 39 H 0.249 0.751 40 H 0.145 0.855 41 H 0.078 0.922 42 H 0.025 0.975 43 H -0.024 1.024 44 H 0.071 0.929 45 H 0.051 0.949 46 H 0.078 0.922 47 H 0.111 0.889 48 H 0.117 0.883 49 H 0.127 0.873 50 H 0.123 0.877 51 H 0.111 0.889 52 H 0.049 0.951 53 H 0.098 0.902 54 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.980 -14.646 -12.080 23.577 hybrid contribution 0.422 0.896 1.286 1.623 sum -13.558 -13.750 -10.795 22.122 Atomic orbital electron populations 1.21833 0.93421 1.02679 1.02066 1.21135 0.96800 0.98763 0.93832 0.92941 1.21586 0.93883 1.01590 0.97372 1.21500 0.96915 0.99949 0.97139 1.21854 0.99367 1.00521 0.94261 1.20976 0.94685 0.95648 0.84209 0.93704 1.45848 1.20399 1.40650 1.30025 1.21023 0.81135 0.83891 0.84411 1.90731 1.60135 1.29847 1.63266 1.21990 0.91492 1.00089 0.95505 1.61623 1.14843 1.03203 1.45849 1.19340 0.96472 0.86027 0.89325 1.21456 0.93849 1.03222 1.36740 0.92422 1.25903 1.01292 0.97383 0.95314 1.70108 1.31691 1.14702 1.41245 0.85366 0.79359 0.78126 0.77970 1.18807 1.20785 1.19769 1.21530 0.97289 0.91389 0.92834 1.22172 1.06121 0.89562 0.99874 1.23137 0.96241 0.96964 1.03718 1.23008 0.94668 1.02121 1.01399 1.21377 0.91502 1.01467 0.95492 0.88348 1.21886 1.01951 0.99464 0.97293 0.92493 0.92100 0.91390 0.90241 0.90876 0.90571 0.93702 0.94673 0.89714 0.75080 0.85544 0.92245 0.97519 1.02376 0.92898 0.94894 0.92181 0.88913 0.88254 0.87334 0.87737 0.88889 0.95070 0.90218 0.93026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 8.84 71.98 0.64 -1.12 16 2 C -0.09 -1.41 2.25 -10.79 -0.02 -1.44 16 3 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 4 C -0.11 -1.54 5.20 30.59 0.16 -1.38 16 5 C -0.12 -2.24 5.92 30.60 0.18 -2.06 16 6 C -0.12 -2.77 5.53 30.60 0.17 -2.60 16 7 C 0.15 3.86 2.00 45.01 0.09 3.95 16 8 H 0.04 1.58 7.39 -2.38 -0.02 1.56 16 9 N -0.72 -19.18 4.29 -442.45 -1.90 -21.08 16 10 C 0.51 19.52 7.54 87.66 0.66 20.18 16 11 O -0.56 -28.87 14.36 -3.00 -0.04 -28.91 16 12 C 0.04 1.45 5.29 85.56 0.45 1.90 16 13 N -0.53 -24.36 4.07 -905.36 -3.69 -28.04 16 14 C 0.21 12.38 4.33 85.56 0.37 12.76 16 15 C -0.51 -31.60 8.24 25.60 0.21 -31.39 16 16 H 0.06 3.52 7.31 -2.91 -0.02 3.49 16 17 C 0.00 -0.11 5.46 84.66 0.46 0.36 16 18 N -0.94 -60.12 13.29 21.45 0.28 -59.84 16 19 Si 0.97 47.53 29.54 68.60 2.03 49.55 16 20 H -0.26 -12.50 7.11 99.48 0.71 -11.80 16 21 H -0.28 -13.66 7.11 99.48 0.71 -12.95 16 22 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 23 C 0.10 3.81 5.08 86.30 0.44 4.25 16 24 C -0.16 -4.87 5.15 -10.79 -0.06 -4.92 16 25 C -0.16 -3.59 10.06 30.62 0.31 -3.28 16 26 C -0.17 -4.24 10.25 30.62 0.31 -3.93 16 27 C -0.08 -1.44 1.85 -10.77 -0.02 -1.46 16 28 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 29 C -0.15 -3.01 8.68 71.98 0.63 -2.38 16 30 H 0.06 0.73 6.43 -2.39 -0.02 0.71 16 31 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 35 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.03 1.03 8.14 -2.38 -0.02 1.01 16 38 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.41 7.74 8.57 -92.71 -0.79 6.94 16 40 H 0.13 3.49 7.21 -2.39 -0.02 3.47 16 41 H 0.06 2.03 8.04 -2.39 -0.02 2.01 16 42 H 0.01 0.44 6.31 -2.39 -0.02 0.42 16 43 H -0.04 -2.51 8.12 -2.39 -0.02 -2.53 16 44 H 0.26 15.75 8.31 -92.70 -0.77 14.98 16 45 H 0.03 1.19 7.74 -2.39 -0.02 1.17 16 46 H 0.06 2.72 6.58 -2.39 -0.02 2.71 16 47 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 48 H 0.10 2.00 8.03 -2.39 -0.02 1.98 16 49 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 50 H 0.10 2.23 8.14 -2.38 -0.02 2.21 16 51 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 52 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 53 H 0.08 1.25 6.43 -2.38 -0.02 1.23 16 54 H 0.05 1.09 7.55 -2.39 -0.02 1.07 16 Total: -1.00 -79.62 414.69 1.71 -77.91 By element: Atomic # 1 Polarization: 22.93 SS G_CDS: 0.05 Total: 22.98 kcal Atomic # 6 Polarization: -17.55 SS G_CDS: 4.98 Total: -12.57 kcal Atomic # 7 Polarization: -103.66 SS G_CDS: -5.30 Total: -108.96 kcal Atomic # 8 Polarization: -28.87 SS G_CDS: -0.04 Total: -28.91 kcal Atomic # 14 Polarization: 47.53 SS G_CDS: 2.03 Total: 49.55 kcal Total: -79.62 1.71 -77.91 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348546101.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.157 kcal (2) G-P(sol) polarization free energy of solvation -79.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds