Wall clock time and date at job start Tue Mar 31 2020 15:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47079 * 2 1 4 4 C 1.52999 * 109.46876 * 119.99370 * 2 1 3 5 5 C 1.53000 * 109.47156 * 59.99714 * 4 2 1 6 6 C 1.50700 * 109.47183 * 179.97438 * 5 4 2 7 7 O 1.21285 * 119.99857 * 0.02562 * 6 5 4 8 8 N 1.34775 * 119.99946 * 180.02562 * 6 5 4 9 9 C 1.46504 * 119.99779 * 180.02562 * 8 6 5 10 10 C 1.53003 * 109.47035 * 180.02562 * 9 8 6 11 11 C 1.53043 * 109.45576 * 295.06779 * 10 9 8 12 12 C 1.53200 * 109.31109 * 178.61573 * 11 10 9 13 13 N 1.46927 * 108.77478 * 54.63437 * 12 11 10 14 14 C 1.36931 * 120.62925 * 126.41610 * 13 12 11 15 15 H 1.08003 * 119.99649 * 207.65978 * 14 13 12 16 16 C 1.38806 * 120.00312 * 27.66073 * 14 13 12 17 17 N 1.31619 * 120.00190 * 17.36983 * 16 14 13 18 18 Si 1.86804 * 120.00274 * 197.36788 * 16 14 13 19 19 H 1.48501 * 109.46989 * 90.00259 * 18 16 14 20 20 H 1.48500 * 109.47005 * 209.99985 * 18 16 14 21 21 H 1.48497 * 109.47061 * 329.99845 * 18 16 14 22 22 C 1.46931 * 118.73929 * 306.39403 * 13 12 11 23 23 C 1.53041 * 109.45820 * 175.00279 * 10 9 8 24 24 C 1.53001 * 109.46560 * 60.00421 * 5 4 2 25 25 C 1.52999 * 109.47042 * 299.99649 * 24 5 4 26 26 H 1.09006 * 109.47226 * 300.00120 * 25 24 5 27 27 C 1.53005 * 109.46908 * 180.02562 * 25 24 5 28 28 C 1.52990 * 109.47113 * 60.00338 * 25 24 5 29 29 H 1.08995 * 109.47348 * 300.00717 * 1 2 3 30 30 H 1.09002 * 109.46726 * 60.00705 * 1 2 3 31 31 H 1.08994 * 109.47224 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47180 * 180.02562 * 4 2 1 33 33 H 1.09004 * 109.47035 * 299.99897 * 4 2 1 34 34 H 1.08996 * 109.47549 * 300.00354 * 5 4 2 35 35 H 0.96997 * 120.00430 * 0.02562 * 8 6 5 36 36 H 1.08996 * 109.47275 * 300.00172 * 9 8 6 37 37 H 1.09004 * 109.47080 * 59.99862 * 9 8 6 38 38 H 1.08998 * 109.46110 * 55.02419 * 10 9 8 39 39 H 1.09001 * 109.49760 * 298.56409 * 11 10 9 40 40 H 1.08997 * 109.50214 * 58.66397 * 11 10 9 41 41 H 1.08998 * 109.58075 * 294.84808 * 12 11 10 42 42 H 1.09001 * 109.58601 * 174.42005 * 12 11 10 43 43 H 0.96995 * 120.00406 * 179.97438 * 17 16 14 44 44 H 1.09003 * 109.58533 * 293.82370 * 22 13 12 45 45 H 1.08996 * 109.70096 * 173.46565 * 22 13 12 46 46 H 1.08998 * 109.49876 * 301.33202 * 23 10 9 47 47 H 1.09001 * 109.50240 * 61.43428 * 23 10 9 48 48 H 1.08997 * 109.47758 * 59.99864 * 24 5 4 49 49 H 1.09007 * 109.47089 * 179.97438 * 24 5 4 50 50 H 1.08994 * 109.47535 * 60.00008 * 27 25 24 51 51 H 1.08999 * 109.46571 * 180.02562 * 27 25 24 52 52 H 1.08996 * 109.46782 * 299.99732 * 27 25 24 53 53 H 1.09002 * 109.47126 * 179.97438 * 28 25 24 54 54 H 1.08997 * 109.47651 * 60.00221 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.5299 -2.1636 1.2495 6 6 2.0327 -2.8741 2.4797 7 8 2.7300 -2.2845 3.2781 8 7 1.7075 -4.1645 2.6929 9 6 2.1959 -4.8550 3.8891 10 6 1.6869 -6.2979 3.8886 11 6 0.1615 -6.3004 4.0120 12 6 -0.3473 -7.7451 3.9764 13 7 0.3438 -8.5157 5.0191 14 6 -0.3677 -9.2284 5.9469 15 1 0.0524 -9.4122 6.9248 16 6 -1.6287 -9.7147 5.6307 17 7 -2.0048 -9.7999 4.3722 18 14 -2.7923 -10.2484 6.9912 19 1 -3.6184 -9.0907 7.4184 20 1 -3.6776 -11.3298 6.4894 21 1 -2.0058 -10.7489 8.1471 22 6 1.8128 -8.5073 5.0472 23 6 2.2973 -7.0542 5.0708 24 6 2.0400 -2.8849 0.0004 25 6 1.5301 -2.1638 -1.2490 26 1 0.4400 -2.1638 -1.2490 27 6 2.0397 -2.8856 -2.4981 28 6 2.0401 -0.7214 -1.2491 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 3.1300 -0.7207 1.2496 33 1 1.6766 -0.2071 2.1393 34 1 0.4399 -2.1636 1.2494 35 1 1.1502 -4.6361 2.0542 36 1 3.2858 -4.8546 3.8894 37 1 1.8321 -4.3413 4.7791 38 1 1.9765 -6.7848 2.9574 39 1 -0.1280 -5.8359 4.9546 40 1 -0.2716 -5.7417 3.1824 41 1 -0.1382 -8.1820 3.0000 42 1 -1.4211 -7.7590 4.1629 43 1 -2.8858 -10.1400 4.1512 44 1 2.1981 -9.0065 4.1580 45 1 2.1662 -9.0249 5.9389 46 1 3.3844 -7.0320 4.9947 47 1 1.9876 -6.5827 6.0035 48 1 3.1300 -2.8850 0.0004 49 1 1.6770 -3.9128 0.0006 50 1 1.6761 -3.9131 -2.4979 51 1 1.6768 -2.3716 -3.3881 52 1 3.1297 -2.8859 -2.4982 53 1 1.6772 -0.2078 -2.1394 54 1 3.1300 -0.7213 -1.2491 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356614061.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:29 Heat of formation + Delta-G solvation = -78.902934 kcal Electronic energy + Delta-G solvation = -28415.280639 eV Core-core repulsion = 24770.723657 eV Total energy + Delta-G solvation = -3644.556982 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.44785 -39.78684 -39.02399 -36.39638 -34.59160 -33.98712 -33.05196 -32.06871 -31.51144 -28.46641 -27.62025 -27.25583 -25.95376 -24.33792 -23.78625 -22.63761 -22.08173 -21.21004 -20.55656 -19.57514 -18.73379 -18.04133 -17.02470 -16.82250 -16.54581 -15.99142 -15.80091 -15.58824 -15.31844 -15.18868 -14.94661 -14.81573 -14.68696 -14.23254 -14.19970 -13.95248 -13.75823 -13.48588 -13.35093 -13.09552 -13.07423 -12.83389 -12.63057 -12.57678 -12.48165 -12.29855 -12.14016 -11.98114 -11.95555 -11.84157 -11.74673 -11.61640 -11.46295 -11.21267 -11.13453 -11.13252 -10.79463 -10.58277 -10.52850 -10.04602 -8.67172 -7.87237 -5.31457 1.45988 1.47686 1.55987 1.65474 2.24919 2.51189 3.26698 3.58893 3.70130 3.71389 3.74844 3.85563 3.95810 4.05936 4.15330 4.19579 4.23826 4.35827 4.42455 4.46297 4.52931 4.54582 4.59041 4.68660 4.73899 4.77863 4.82208 4.84386 4.85954 4.92845 5.00045 5.03818 5.05443 5.08092 5.15683 5.17588 5.21820 5.25372 5.29056 5.29351 5.32121 5.41287 5.41949 5.45973 5.50051 5.51144 5.56901 5.66056 5.66947 5.79696 6.40131 6.57519 7.16344 7.26479 7.88430 8.38793 9.18703 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.018663 B = 0.002474 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.963498 B =11317.039169 C =11674.877663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.088 4.088 3 H 0.075 0.925 4 C -0.090 4.090 5 C -0.100 4.100 6 C 0.512 3.488 7 O -0.588 6.588 8 N -0.717 5.717 9 C 0.135 3.865 10 C -0.078 4.078 11 C -0.120 4.120 12 C 0.177 3.823 13 N -0.612 5.612 14 C -0.262 4.262 15 H 0.063 0.937 16 C -0.050 4.050 17 N -0.933 5.933 18 Si 0.964 3.036 19 H -0.286 1.286 20 H -0.294 1.294 21 H -0.270 1.270 22 C 0.141 3.859 23 C -0.116 4.116 24 C -0.102 4.102 25 C -0.089 4.089 26 H 0.082 0.918 27 C -0.147 4.147 28 C -0.108 4.108 29 H 0.049 0.951 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.113 0.887 35 H 0.411 0.589 36 H 0.065 0.935 37 H 0.051 0.949 38 H 0.077 0.923 39 H 0.043 0.957 40 H 0.071 0.929 41 H 0.001 0.999 42 H 0.051 0.949 43 H 0.250 0.750 44 H 0.017 0.983 45 H 0.051 0.949 46 H 0.083 0.917 47 H 0.053 0.947 48 H 0.059 0.941 49 H 0.075 0.925 50 H 0.056 0.944 51 H 0.062 0.938 52 H 0.051 0.949 53 H 0.074 0.926 54 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.446 18.465 -13.999 24.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.106 4.106 3 H 0.094 0.906 4 C -0.128 4.128 5 C -0.121 4.121 6 C 0.300 3.700 7 O -0.468 6.468 8 N -0.369 5.369 9 C 0.011 3.989 10 C -0.097 4.097 11 C -0.159 4.159 12 C 0.051 3.949 13 N -0.336 5.336 14 C -0.393 4.393 15 H 0.081 0.919 16 C -0.246 4.246 17 N -0.579 5.579 18 Si 0.792 3.208 19 H -0.213 1.213 20 H -0.221 1.221 21 H -0.195 1.195 22 C 0.016 3.984 23 C -0.155 4.155 24 C -0.140 4.140 25 C -0.107 4.107 26 H 0.101 0.899 27 C -0.204 4.204 28 C -0.145 4.145 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.131 0.869 35 H 0.248 0.752 36 H 0.084 0.916 37 H 0.070 0.930 38 H 0.096 0.904 39 H 0.062 0.938 40 H 0.089 0.911 41 H 0.019 0.981 42 H 0.069 0.931 43 H 0.059 0.941 44 H 0.035 0.965 45 H 0.070 0.930 46 H 0.101 0.899 47 H 0.072 0.928 48 H 0.077 0.923 49 H 0.094 0.906 50 H 0.075 0.925 51 H 0.081 0.919 52 H 0.070 0.930 53 H 0.092 0.908 54 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.813 18.782 -13.471 24.398 hybrid contribution -0.999 -0.906 0.690 1.515 sum 6.814 17.876 -12.781 23.007 Atomic orbital electron populations 1.21961 0.94680 1.02353 1.01935 1.21103 0.96396 0.99205 0.93909 0.90623 1.21315 1.00286 0.93047 0.98151 1.21397 1.02849 0.96039 0.91836 1.21273 0.79310 0.81658 0.87800 1.90663 1.40132 1.67029 1.49026 1.46056 1.53376 1.12015 1.25431 1.21275 0.98595 0.91577 0.87418 1.21156 0.95251 0.93643 0.99624 1.22039 0.95405 0.97744 1.00720 1.20599 0.96694 0.88330 0.89277 1.44347 1.00951 1.54460 1.33862 1.19505 0.99433 1.27326 0.93008 0.91903 1.25737 1.01310 0.99735 0.97776 1.70169 1.20037 1.50508 1.17164 0.85320 0.78989 0.77214 0.79261 1.21332 1.22058 1.19520 1.21040 0.83796 0.95034 0.98560 1.21859 1.00068 0.96012 0.97556 1.21593 1.00855 0.99166 0.92341 1.21148 1.01108 0.94687 0.93750 0.89945 1.21818 1.01093 1.00411 0.97122 1.21629 1.00434 0.94997 0.97447 0.93162 0.91712 0.91891 0.92781 0.92855 0.86945 0.75203 0.91623 0.93037 0.90438 0.93832 0.91061 0.98133 0.93095 0.94119 0.96497 0.93012 0.89888 0.92841 0.92265 0.90598 0.92499 0.91867 0.92963 0.90753 0.92335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 8.50 71.98 0.61 -1.20 16 2 C -0.09 -1.16 3.19 -10.79 -0.03 -1.20 16 3 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 4 C -0.09 -1.66 4.02 30.59 0.12 -1.54 16 5 C -0.10 -1.79 2.25 -11.54 -0.03 -1.81 16 6 C 0.51 12.89 7.15 87.66 0.63 13.51 16 7 O -0.59 -19.77 15.98 -3.04 -0.05 -19.82 16 8 N -0.72 -16.61 5.16 -463.04 -2.39 -19.00 16 9 C 0.14 3.60 5.06 86.38 0.44 4.04 16 10 C -0.08 -2.28 2.19 -10.76 -0.02 -2.31 16 11 C -0.12 -4.19 5.25 30.68 0.16 -4.03 16 12 C 0.18 8.21 5.31 86.36 0.46 8.67 16 13 N -0.61 -30.40 3.00 -699.07 -2.09 -32.49 16 14 C -0.26 -14.47 9.59 84.03 0.81 -13.66 16 15 H 0.06 3.41 7.89 -2.91 -0.02 3.39 16 16 C -0.05 -2.80 4.91 84.86 0.42 -2.38 16 17 N -0.93 -54.65 11.19 21.65 0.24 -54.40 16 18 Si 0.96 44.94 29.59 68.60 2.03 46.97 16 19 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 20 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 21 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 22 C 0.14 5.69 6.51 86.36 0.56 6.26 16 23 C -0.12 -3.67 5.36 30.67 0.16 -3.51 16 24 C -0.10 -1.48 4.38 30.59 0.13 -1.35 16 25 C -0.09 -1.03 2.44 -10.80 -0.03 -1.06 16 26 H 0.08 0.89 6.43 -2.38 -0.02 0.88 16 27 C -0.15 -1.59 9.19 71.98 0.66 -0.93 16 28 C -0.11 -1.24 4.73 30.59 0.14 -1.10 16 29 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.06 0.73 4.81 -2.39 -0.01 0.72 16 32 H 0.05 1.15 8.10 -2.39 -0.02 1.13 16 33 H 0.05 1.14 8.10 -2.38 -0.02 1.12 16 34 H 0.11 1.73 6.43 -2.39 -0.02 1.71 16 35 H 0.41 7.84 7.06 -92.71 -0.65 7.18 16 36 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 38 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 39 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.07 2.10 7.15 -2.39 -0.02 2.08 16 41 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 42 H 0.05 2.73 6.04 -2.39 -0.01 2.72 16 43 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 44 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 45 H 0.05 2.07 7.94 -2.39 -0.02 2.05 16 46 H 0.08 2.16 8.14 -2.39 -0.02 2.15 16 47 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 48 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 49 H 0.08 1.00 7.56 -2.38 -0.02 0.98 16 50 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 51 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 52 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 53 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 54 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -67.06 400.51 3.13 -63.93 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: 0.19 Total: 18.40 kcal Atomic # 6 Polarization: -8.79 SS G_CDS: 5.20 Total: -3.59 kcal Atomic # 7 Polarization: -101.65 SS G_CDS: -4.24 Total: -105.89 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: -0.05 Total: -19.82 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -67.06 3.13 -63.93 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356614061.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.973 kcal (2) G-P(sol) polarization free energy of solvation -67.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds