Wall clock time and date at job start Tue Mar 31 2020 15:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52828 * 1 3 3 H 1.11138 * 106.60583 * 2 1 4 4 C 1.52206 * 110.62074 * 244.05430 * 2 1 3 5 5 C 1.52766 * 110.76483 * 285.39967 * 4 2 1 6 6 H 1.08687 * 110.32851 * 60.54431 * 5 4 2 7 7 C 1.53355 * 109.11396 * 180.02562 * 5 4 2 8 8 C 1.50702 * 109.47302 * 293.87622 * 7 5 4 9 9 O 1.21288 * 119.99785 * 0.02562 * 8 7 5 10 10 N 1.34770 * 120.00579 * 180.02562 * 8 7 5 11 11 C 1.46972 * 120.59066 * 359.72732 * 10 8 7 12 12 C 1.53806 * 108.39786 * 124.75856 * 11 10 8 13 13 N 1.46962 * 108.58357 * 49.63441 * 12 11 10 14 14 C 1.36939 * 120.59479 * 124.67016 * 13 12 11 15 15 H 1.08003 * 119.99435 * 208.19704 * 14 13 12 16 16 C 1.38810 * 119.99872 * 28.19232 * 14 13 12 17 17 N 1.31621 * 119.99965 * 17.60147 * 16 14 13 18 18 Si 1.86802 * 119.99887 * 197.59792 * 16 14 13 19 19 H 1.48503 * 109.46974 * 90.00266 * 18 16 14 20 20 H 1.48499 * 109.47216 * 210.00245 * 18 16 14 21 21 H 1.48495 * 109.47142 * 330.00472 * 18 16 14 22 22 C 1.46968 * 118.81268 * 304.64727 * 13 12 11 23 23 C 1.46966 * 120.59644 * 180.02562 * 10 8 7 24 24 C 1.52703 * 108.88700 * 299.10942 * 5 4 2 25 25 C 1.52474 * 110.79598 * 61.67740 * 24 5 4 26 26 C 1.54412 * 107.71320 * 188.38093 * 25 24 5 27 27 C 1.53112 * 110.03791 * 71.57925 * 25 24 5 28 28 C 1.51527 * 111.72142 * 117.02135 * 2 1 3 29 29 H 1.09003 * 109.46936 * 300.00075 * 1 2 3 30 30 H 1.09001 * 109.46956 * 59.99903 * 1 2 3 31 31 H 1.09002 * 109.47487 * 179.97438 * 1 2 3 32 32 H 1.09343 * 109.55512 * 45.89147 * 4 2 1 33 33 H 1.09318 * 109.59794 * 164.83580 * 4 2 1 34 34 H 1.08994 * 109.47903 * 53.87838 * 7 5 4 35 35 H 1.09004 * 109.47060 * 173.88242 * 7 5 4 36 36 H 1.09001 * 109.60814 * 244.53852 * 11 10 8 37 37 H 1.08997 * 109.60569 * 5.04859 * 11 10 8 38 38 H 1.09009 * 109.74207 * 289.84576 * 12 11 10 39 39 H 1.09004 * 109.67672 * 169.38718 * 12 11 10 40 40 H 0.96999 * 119.99696 * 179.97438 * 17 16 14 41 41 H 1.09000 * 109.61154 * 295.48096 * 22 13 12 42 42 H 1.08995 * 109.75272 * 175.04995 * 22 13 12 43 43 H 1.08999 * 109.61192 * 354.94673 * 23 10 8 44 44 H 1.09001 * 109.60920 * 115.46083 * 23 10 8 45 45 H 1.09294 * 109.27152 * 301.02756 * 24 5 4 46 46 H 1.09302 * 109.27330 * 182.32882 * 24 5 4 47 47 H 1.08996 * 109.47423 * 181.65369 * 26 25 24 48 48 H 1.09008 * 109.46970 * 301.65347 * 26 25 24 49 49 H 1.09002 * 109.47256 * 61.65123 * 26 25 24 50 50 H 1.08994 * 109.47004 * 294.87848 * 27 25 24 51 51 H 1.09001 * 109.46716 * 54.87834 * 27 25 24 52 52 H 1.08998 * 109.47096 * 174.87484 * 27 25 24 53 53 H 1.10245 * 108.74456 * 204.67990 * 28 2 1 54 54 H 1.10204 * 108.79224 * 319.76208 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5283 0.0000 0.0000 3 1 1.8459 1.0650 0.0000 4 6 2.0643 -0.6233 -1.2810 5 6 1.9000 -2.1418 -1.2544 6 1 0.8495 -2.4065 -1.1675 7 6 2.4515 -2.7295 -2.5591 8 6 1.5971 -2.2762 -3.7149 9 8 0.6425 -1.5547 -3.5169 10 7 1.8938 -2.6723 -4.9684 11 6 3.0510 -3.5416 -5.2239 12 6 2.5636 -4.7887 -5.9808 13 7 1.7394 -4.3544 -7.1173 14 6 2.0409 -4.7570 -8.3910 15 1 1.7732 -4.1342 -9.2318 16 6 2.6905 -5.9655 -8.6014 17 7 2.7114 -6.8757 -7.6509 18 14 3.5352 -6.3001 -10.2336 19 1 4.9449 -5.8384 -10.1652 20 1 3.5047 -7.7574 -10.5172 21 1 2.8273 -5.5703 -11.3160 22 6 0.5855 -3.4806 -6.8625 23 6 1.0699 -2.2376 -6.1050 24 6 2.6925 -2.7042 -0.0764 25 6 2.1620 -2.1563 1.2439 26 6 3.1354 -2.5947 2.3595 27 6 0.7969 -2.7745 1.5577 28 6 2.0891 -0.6395 1.2540 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.5220 -0.2184 -2.1398 33 1 3.1238 -0.3780 -1.3926 34 1 3.4754 -2.3868 -2.7079 35 1 2.4373 -3.8179 -2.5019 36 1 3.7839 -3.0069 -5.8281 37 1 3.5011 -3.8391 -4.2769 38 1 1.9686 -5.4142 -5.3152 39 1 3.4207 -5.3549 -6.3456 40 1 3.1651 -7.7203 -7.7981 41 1 -0.1504 -4.0129 -6.2598 42 1 0.1351 -3.1800 -7.8084 43 1 0.2113 -1.6738 -5.7401 44 1 1.6652 -1.6123 -6.7704 45 1 3.7451 -2.4313 -0.1867 46 1 2.6132 -3.7943 -0.0759 47 1 2.7667 -2.2421 3.3227 48 1 3.2058 -3.6824 2.3735 49 1 4.1208 -2.1693 2.1698 50 1 0.0724 -2.4549 0.8087 51 1 0.8785 -3.8614 1.5438 52 1 0.4680 -2.4475 2.5441 53 1 3.1014 -0.2412 1.4325 54 1 1.4806 -0.3229 2.1166 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359693766.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:26 Heat of formation + Delta-G solvation = -58.037493 kcal Electronic energy + Delta-G solvation = -29187.033680 eV Core-core repulsion = 25543.381492 eV Total energy + Delta-G solvation = -3643.652188 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.39198 -40.19901 -38.38624 -35.58705 -35.09662 -34.31781 -33.17236 -31.84318 -29.31276 -28.43990 -27.92713 -27.34416 -27.01008 -25.38833 -24.43356 -22.76208 -21.83433 -21.15251 -19.92520 -18.99195 -18.52645 -17.65610 -16.96396 -16.67662 -16.42586 -16.19466 -15.53710 -15.47937 -15.29630 -15.18875 -15.15083 -14.98811 -14.68537 -14.17140 -14.08715 -13.98022 -13.47982 -13.34188 -13.23497 -13.06943 -12.96572 -12.71411 -12.62148 -12.52937 -12.43020 -12.34711 -12.21081 -12.01226 -11.95479 -11.88809 -11.82380 -11.66341 -11.63007 -11.52979 -11.03331 -10.97364 -10.63367 -10.59945 -10.41296 -9.75816 -8.65666 -7.89165 -5.37412 1.48770 1.50287 1.58847 1.72986 2.12319 2.51282 3.24942 3.58246 3.60545 3.68988 3.74419 3.91124 4.14768 4.21080 4.24245 4.28188 4.30099 4.34176 4.38478 4.40434 4.53062 4.58440 4.63708 4.68359 4.73814 4.74751 4.80750 4.83067 4.84449 4.88629 4.94803 4.97347 5.02856 5.05968 5.10057 5.12439 5.16062 5.18898 5.23814 5.29454 5.30196 5.40087 5.53309 5.55183 5.56584 5.60525 5.62660 5.67912 5.70985 5.74324 6.35109 6.58038 7.10544 7.27888 7.78033 8.31684 9.15735 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.023967 B = 0.002752 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.992923 B =10172.570464 C =10831.085251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.080 4.080 3 H 0.059 0.941 4 C -0.108 4.108 5 C -0.059 4.059 6 H 0.059 0.941 7 C -0.134 4.134 8 C 0.507 3.493 9 O -0.579 6.579 10 N -0.607 5.607 11 C 0.096 3.904 12 C 0.162 3.838 13 N -0.609 5.609 14 C -0.267 4.267 15 H 0.067 0.933 16 C -0.045 4.045 17 N -0.932 5.932 18 Si 0.969 3.031 19 H -0.281 1.281 20 H -0.296 1.296 21 H -0.272 1.272 22 C 0.133 3.867 23 C 0.107 3.893 24 C -0.099 4.099 25 C -0.056 4.056 26 C -0.142 4.142 27 C -0.146 4.146 28 C -0.094 4.094 29 H 0.060 0.940 30 H 0.037 0.963 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.059 0.941 34 H 0.110 0.890 35 H 0.100 0.900 36 H 0.067 0.933 37 H 0.108 0.892 38 H -0.001 1.001 39 H 0.075 0.925 40 H 0.252 0.748 41 H 0.006 0.994 42 H 0.070 0.930 43 H 0.084 0.916 44 H 0.067 0.933 45 H 0.071 0.929 46 H 0.064 0.936 47 H 0.057 0.943 48 H 0.055 0.945 49 H 0.057 0.943 50 H 0.049 0.951 51 H 0.053 0.947 52 H 0.059 0.941 53 H 0.062 0.938 54 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.746 10.926 19.371 22.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.098 4.098 3 H 0.077 0.923 4 C -0.146 4.146 5 C -0.078 4.078 6 H 0.077 0.923 7 C -0.173 4.173 8 C 0.297 3.703 9 O -0.460 6.460 10 N -0.339 5.339 11 C -0.027 4.027 12 C 0.036 3.964 13 N -0.333 5.333 14 C -0.396 4.396 15 H 0.085 0.915 16 C -0.241 4.241 17 N -0.577 5.577 18 Si 0.797 3.203 19 H -0.208 1.208 20 H -0.223 1.223 21 H -0.197 1.197 22 C 0.006 3.994 23 C -0.018 4.018 24 C -0.136 4.136 25 C -0.056 4.056 26 C -0.199 4.199 27 C -0.203 4.203 28 C -0.131 4.131 29 H 0.079 0.921 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.128 0.872 35 H 0.118 0.882 36 H 0.086 0.914 37 H 0.126 0.874 38 H 0.017 0.983 39 H 0.093 0.907 40 H 0.061 0.939 41 H 0.024 0.976 42 H 0.088 0.912 43 H 0.102 0.898 44 H 0.085 0.915 45 H 0.090 0.910 46 H 0.083 0.917 47 H 0.076 0.924 48 H 0.074 0.926 49 H 0.076 0.924 50 H 0.068 0.932 51 H 0.072 0.928 52 H 0.078 0.922 53 H 0.081 0.919 54 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.321 11.156 19.453 22.545 hybrid contribution 0.048 -0.658 -1.297 1.456 sum 2.370 10.497 18.156 21.106 Atomic orbital electron populations 1.21878 0.95802 1.01553 1.00809 1.20720 0.95344 0.99242 0.94543 0.92280 1.21504 1.00535 0.94944 0.97573 1.20684 0.99507 0.95390 0.92213 0.92303 1.21931 1.00254 1.02925 0.92209 1.21309 0.85290 0.79510 0.84190 1.90596 1.31352 1.39296 1.84710 1.48197 1.29762 1.49283 1.06635 1.22533 0.87083 0.91725 1.01401 1.21112 0.95241 0.92544 0.87490 1.44265 1.28427 1.56681 1.03904 1.19511 1.34808 1.00365 0.84957 0.91500 1.25782 1.02826 0.94674 1.00795 1.70162 1.46077 1.06204 1.35280 0.85251 0.78829 0.76368 0.79856 1.20769 1.22292 1.19680 1.21345 0.89266 0.90812 0.97936 1.21945 0.95486 0.96724 0.87627 1.21530 0.99487 1.00006 0.92613 1.20335 0.95650 0.94709 0.94914 1.22245 0.98669 1.01256 0.97724 1.22056 0.96592 1.00353 1.01265 1.21222 1.01323 0.94003 0.96564 0.92071 0.94343 0.92997 0.92908 0.92184 0.87175 0.88172 0.91426 0.87402 0.98298 0.90694 0.93855 0.97566 0.91207 0.89777 0.91510 0.91007 0.91723 0.92375 0.92591 0.92370 0.93220 0.92813 0.92225 0.91889 0.91880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 8.89 71.92 0.64 -2.36 16 2 C -0.08 -1.55 2.60 -11.60 -0.03 -1.58 16 3 H 0.06 1.09 8.29 -1.23 -0.01 1.08 16 4 C -0.11 -2.45 4.37 30.25 0.13 -2.32 16 5 C -0.06 -1.32 1.65 -10.85 -0.02 -1.34 16 6 H 0.06 1.59 6.13 -2.55 -0.02 1.57 16 7 C -0.13 -3.20 3.49 29.97 0.10 -3.09 16 8 C 0.51 16.53 7.40 87.66 0.65 17.18 16 9 O -0.58 -21.87 13.41 -3.05 -0.04 -21.91 16 10 N -0.61 -21.12 2.94 -817.06 -2.40 -23.53 16 11 C 0.10 3.28 6.54 86.56 0.57 3.84 16 12 C 0.16 7.36 5.53 86.56 0.48 7.84 16 13 N -0.61 -29.97 2.97 -697.26 -2.07 -32.04 16 14 C -0.27 -14.24 9.58 84.03 0.80 -13.43 16 15 H 0.07 3.50 7.89 -2.91 -0.02 3.48 16 16 C -0.04 -2.42 4.90 84.86 0.42 -2.00 16 17 N -0.93 -52.94 11.20 21.65 0.24 -52.70 16 18 Si 0.97 43.34 29.59 68.60 2.03 45.37 16 19 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 20 H -0.30 -13.42 7.11 99.48 0.71 -12.71 16 21 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 22 C 0.13 5.66 6.67 86.43 0.58 6.24 16 23 C 0.11 3.90 6.59 86.43 0.57 4.47 16 24 C -0.10 -1.71 3.77 30.32 0.11 -1.59 16 25 C -0.06 -0.87 0.71 -52.22 -0.04 -0.91 16 26 C -0.14 -1.82 8.10 72.46 0.59 -1.23 16 27 C -0.15 -2.42 8.01 72.02 0.58 -1.84 16 28 C -0.09 -1.47 4.12 29.73 0.12 -1.35 16 29 H 0.06 1.07 8.13 -2.39 -0.02 1.05 16 30 H 0.04 0.91 8.13 -2.39 -0.02 0.89 16 31 H 0.05 1.17 4.82 -2.39 -0.01 1.15 16 32 H 0.05 1.53 5.94 -2.20 -0.01 1.52 16 33 H 0.06 1.23 8.17 -2.22 -0.02 1.21 16 34 H 0.11 2.17 7.90 -2.39 -0.02 2.16 16 35 H 0.10 2.27 7.73 -2.38 -0.02 2.25 16 36 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 37 H 0.11 2.88 5.91 -2.39 -0.01 2.86 16 38 H 0.00 -0.05 8.14 -2.38 -0.02 -0.07 16 39 H 0.07 3.77 5.98 -2.39 -0.01 3.76 16 40 H 0.25 13.86 8.31 -92.71 -0.77 13.09 16 41 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 42 H 0.07 2.84 7.94 -2.39 -0.02 2.82 16 43 H 0.08 3.04 6.99 -2.39 -0.02 3.02 16 44 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 45 H 0.07 1.11 8.12 -2.23 -0.02 1.09 16 46 H 0.06 1.10 8.12 -2.23 -0.02 1.08 16 47 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 48 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 49 H 0.06 0.69 8.05 -2.39 -0.02 0.67 16 50 H 0.05 0.96 4.61 -2.39 -0.01 0.95 16 51 H 0.05 0.87 8.12 -2.39 -0.02 0.85 16 52 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 53 H 0.06 0.89 7.92 -1.72 -0.01 0.88 16 54 H 0.06 0.91 7.97 -1.74 -0.01 0.90 16 Total: -1.00 -63.13 392.53 4.88 -58.24 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: 0.87 Total: 20.03 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: 6.25 Total: 6.53 kcal Atomic # 7 Polarization: -104.03 SS G_CDS: -4.23 Total: -108.26 kcal Atomic # 8 Polarization: -21.87 SS G_CDS: -0.04 Total: -21.91 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -63.13 4.88 -58.24 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359693766.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.206 kcal (2) G-P(sol) polarization free energy of solvation -63.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds