Wall clock time and date at job start Tue Mar 31 2020 15:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47262 * 2 1 4 4 C 1.52999 * 109.47302 * 119.99928 * 2 1 3 5 5 C 1.52998 * 109.47302 * 180.02562 * 4 2 1 6 6 H 1.09007 * 109.47189 * 60.00069 * 5 4 2 7 7 C 1.52999 * 109.47302 * 180.02562 * 5 4 2 8 8 C 1.50705 * 109.46857 * 295.00104 * 7 5 4 9 9 O 1.21284 * 120.00065 * 359.97438 * 8 7 5 10 10 N 1.34778 * 119.99709 * 180.02562 * 8 7 5 11 11 C 1.46959 * 120.59583 * 359.71870 * 10 8 7 12 12 C 1.53808 * 108.39809 * 124.75889 * 11 10 8 13 13 N 1.46962 * 108.58143 * 49.64134 * 12 11 10 14 14 C 1.36938 * 120.60106 * 124.66861 * 13 12 11 15 15 H 1.08003 * 119.99490 * 332.29684 * 14 13 12 16 16 C 1.38808 * 120.00239 * 152.29888 * 14 13 12 17 17 N 1.31626 * 119.99758 * 159.32752 * 16 14 13 18 18 Si 1.86798 * 120.00212 * 339.32675 * 16 14 13 19 19 H 1.48496 * 109.47176 * 93.67731 * 18 16 14 20 20 H 1.48493 * 109.47087 * 213.68015 * 18 16 14 21 21 H 1.48500 * 109.46900 * 333.67857 * 18 16 14 22 22 C 1.46966 * 118.80747 * 304.64729 * 13 12 11 23 23 C 1.46967 * 120.59099 * 179.97438 * 10 8 7 24 24 C 1.52997 * 109.47026 * 300.00025 * 5 4 2 25 25 C 1.52992 * 109.47235 * 60.00107 * 24 5 4 26 26 C 1.52996 * 109.47697 * 59.99840 * 25 24 5 27 27 C 1.53006 * 109.47360 * 179.97438 * 25 24 5 28 28 C 1.52997 * 109.47026 * 239.99953 * 2 1 3 29 29 H 1.09000 * 109.47292 * 300.00030 * 1 2 3 30 30 H 1.08991 * 109.47372 * 60.00486 * 1 2 3 31 31 H 1.09007 * 109.47189 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.46942 * 59.99918 * 4 2 1 33 33 H 1.09000 * 109.46981 * 300.00232 * 4 2 1 34 34 H 1.08997 * 109.47209 * 54.99846 * 7 5 4 35 35 H 1.08993 * 109.47357 * 175.00301 * 7 5 4 36 36 H 1.09007 * 109.61081 * 244.54412 * 11 10 8 37 37 H 1.08997 * 109.61030 * 5.04936 * 11 10 8 38 38 H 1.08997 * 109.74408 * 289.84477 * 12 11 10 39 39 H 1.09004 * 109.53503 * 169.30476 * 12 11 10 40 40 H 0.96995 * 119.99790 * 179.97438 * 17 16 14 41 41 H 1.09004 * 109.60770 * 295.48033 * 22 13 12 42 42 H 1.08999 * 109.61135 * 174.97230 * 22 13 12 43 43 H 1.08998 * 109.61210 * 354.94533 * 23 10 8 44 44 H 1.09008 * 109.60771 * 115.28704 * 23 10 8 45 45 H 1.09004 * 109.47204 * 179.97438 * 24 5 4 46 46 H 1.08995 * 109.47225 * 299.99578 * 24 5 4 47 47 H 1.09003 * 109.47312 * 59.99587 * 26 25 24 48 48 H 1.08995 * 109.47659 * 180.02562 * 26 25 24 49 49 H 1.08999 * 109.46857 * 300.00668 * 26 25 24 50 50 H 1.09007 * 109.47034 * 59.99954 * 27 25 24 51 51 H 1.08995 * 109.47236 * 179.97438 * 27 25 24 52 52 H 1.09001 * 109.46771 * 300.00193 * 27 25 24 53 53 H 1.09005 * 109.47259 * 299.99509 * 28 2 1 54 54 H 1.09002 * 109.47505 * 60.00115 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5700 -0.7207 1.2495 6 1 3.9330 0.3072 1.2498 7 6 4.0800 -1.4424 2.4985 8 6 3.6808 -0.6649 3.7262 9 8 3.0508 0.3653 3.6133 10 7 4.0247 -1.1140 4.9495 11 6 4.7837 -2.3632 5.1017 12 6 6.0537 -2.0636 5.9159 13 7 5.6712 -1.3159 7.1219 14 6 6.0206 -1.7720 8.3649 15 1 6.1624 -2.8296 8.5318 16 6 6.1926 -0.8752 9.4104 17 7 6.1230 -1.2952 10.6559 18 14 6.5229 0.9276 9.0497 19 1 5.2401 1.6757 9.0508 20 1 7.4216 1.4845 10.0924 21 1 7.1695 1.0558 7.7190 22 6 4.9074 -0.0695 6.9700 23 6 3.6427 -0.3659 6.1555 24 6 4.0805 -1.4415 0.0003 25 6 3.5705 -0.7203 -1.2489 26 6 4.0799 0.7223 -1.2487 27 6 4.0816 -1.4409 -2.4982 28 6 2.0399 -0.7213 -1.2492 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.6767 -1.7489 1.2492 33 1 1.6767 -0.2074 2.1392 34 1 3.6458 -2.4411 2.5437 35 1 5.1663 -1.5202 2.4550 36 1 4.1748 -3.0996 5.6263 37 1 5.0590 -2.7460 4.1190 38 1 6.7420 -1.4662 5.3180 39 1 6.5323 -3.0000 6.2025 40 1 6.2435 -0.6686 11.3864 41 1 5.5141 0.6699 6.4472 42 1 4.6290 0.3110 7.9528 43 1 3.1645 0.5707 5.8689 44 1 2.9519 -0.9618 6.7521 45 1 5.1705 -1.4408 0.0003 46 1 3.7176 -2.4693 0.0001 47 1 5.1700 0.7228 -1.2484 48 1 3.7163 1.2363 -2.1384 49 1 3.7163 1.2359 -0.3587 50 1 3.7190 -2.4688 -2.4986 51 1 3.7179 -0.9273 -3.3881 52 1 5.1716 -1.4401 -2.4977 53 1 1.6767 -1.7490 -1.2492 54 1 1.6767 -0.2075 -2.1393 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359693769.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:30 Heat of formation + Delta-G solvation = -55.776023 kcal Electronic energy + Delta-G solvation = -29145.818051 eV Core-core repulsion = 25502.263928 eV Total energy + Delta-G solvation = -3643.554123 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.48216 -40.34722 -38.59539 -35.68101 -34.97929 -34.44239 -33.47048 -32.32107 -29.46666 -28.22771 -27.99487 -27.37655 -27.08791 -25.34282 -24.71659 -22.69155 -21.56787 -21.37346 -19.93663 -19.40133 -18.68911 -17.90795 -17.04128 -16.86141 -16.60291 -16.03654 -15.93459 -15.80985 -15.55946 -15.40871 -14.97990 -14.71576 -14.59112 -14.30237 -14.23911 -13.99627 -13.70283 -13.56680 -13.38034 -13.17160 -12.98747 -12.83958 -12.64490 -12.57887 -12.50919 -12.42641 -12.29683 -12.19967 -11.98736 -11.84022 -11.77301 -11.63808 -11.61416 -11.54080 -11.07178 -10.95182 -10.86667 -10.75961 -10.42607 -9.83748 -8.87754 -8.20505 -5.52716 1.26021 1.37435 1.44999 1.70226 2.03947 2.36843 3.01714 3.28662 3.55248 3.69181 3.75688 3.89995 4.07039 4.09735 4.11882 4.24827 4.27727 4.30350 4.40408 4.42626 4.47350 4.50889 4.56071 4.61074 4.69013 4.69725 4.76947 4.79174 4.81025 4.83911 4.88613 4.90424 4.92479 4.96859 5.03346 5.05873 5.11940 5.17045 5.17773 5.21226 5.26087 5.30958 5.42387 5.45491 5.51528 5.57574 5.60021 5.66002 5.75208 5.82075 6.09510 6.54318 6.84653 7.24582 7.55889 7.97302 8.98917 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.024233 B = 0.002804 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.155177 B = 9983.626818 C =10259.343957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.090 4.090 3 H 0.057 0.943 4 C -0.109 4.109 5 C -0.067 4.067 6 H 0.058 0.942 7 C -0.129 4.129 8 C 0.506 3.494 9 O -0.582 6.582 10 N -0.608 5.608 11 C 0.098 3.902 12 C 0.126 3.874 13 N -0.620 5.620 14 C -0.246 4.246 15 H 0.064 0.936 16 C -0.029 4.029 17 N -0.952 5.952 18 Si 0.937 3.063 19 H -0.279 1.279 20 H -0.309 1.309 21 H -0.267 1.267 22 C 0.115 3.885 23 C 0.106 3.894 24 C -0.098 4.098 25 C -0.063 4.063 26 C -0.145 4.145 27 C -0.137 4.137 28 C -0.096 4.096 29 H 0.040 0.960 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.049 0.951 34 H 0.115 0.885 35 H 0.112 0.888 36 H 0.070 0.930 37 H 0.126 0.874 38 H 0.037 0.963 39 H 0.082 0.918 40 H 0.262 0.738 41 H 0.026 0.974 42 H 0.060 0.940 43 H 0.082 0.918 44 H 0.064 0.936 45 H 0.069 0.931 46 H 0.074 0.926 47 H 0.054 0.946 48 H 0.055 0.945 49 H 0.047 0.953 50 H 0.060 0.940 51 H 0.055 0.945 52 H 0.057 0.943 53 H 0.066 0.934 54 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.430 -2.296 -28.594 29.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.109 4.109 3 H 0.075 0.925 4 C -0.147 4.147 5 C -0.086 4.086 6 H 0.076 0.924 7 C -0.169 4.169 8 C 0.297 3.703 9 O -0.463 6.463 10 N -0.340 5.340 11 C -0.026 4.026 12 C 0.001 3.999 13 N -0.344 5.344 14 C -0.375 4.375 15 H 0.082 0.918 16 C -0.225 4.225 17 N -0.597 5.597 18 Si 0.767 3.233 19 H -0.206 1.206 20 H -0.238 1.238 21 H -0.192 1.192 22 C -0.011 4.011 23 C -0.019 4.019 24 C -0.135 4.135 25 C -0.064 4.064 26 C -0.203 4.203 27 C -0.195 4.195 28 C -0.133 4.133 29 H 0.060 0.940 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.133 0.867 35 H 0.130 0.870 36 H 0.088 0.912 37 H 0.144 0.856 38 H 0.055 0.945 39 H 0.100 0.900 40 H 0.071 0.929 41 H 0.044 0.956 42 H 0.078 0.922 43 H 0.100 0.900 44 H 0.083 0.917 45 H 0.088 0.912 46 H 0.093 0.907 47 H 0.073 0.927 48 H 0.074 0.926 49 H 0.066 0.934 50 H 0.079 0.921 51 H 0.074 0.926 52 H 0.076 0.924 53 H 0.085 0.915 54 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.725 -1.751 -28.504 29.339 hybrid contribution 0.239 1.219 1.092 1.654 sum -6.486 -0.532 -27.413 28.175 Atomic orbital electron populations 1.21802 0.95291 1.01861 1.01263 1.21110 0.95358 0.99293 0.95131 0.92491 1.21678 0.95037 1.00228 0.97742 1.20890 0.95620 0.99179 0.92889 0.92358 1.21844 1.04057 1.00484 0.90482 1.21479 0.78299 0.85446 0.85082 1.90616 1.42342 1.26648 1.86663 1.48185 1.55114 1.25253 1.05496 1.22491 0.92937 0.84680 1.02478 1.21652 0.94873 0.96607 0.86753 1.44441 1.61869 1.25308 1.02822 1.18905 1.40736 0.92534 0.85357 0.91817 1.25825 1.00360 1.01329 0.94960 1.69943 1.54387 1.36419 0.98992 0.86050 0.77614 0.82686 0.76927 1.20617 1.23759 1.19212 1.21621 0.92354 0.88874 0.98237 1.21844 0.96619 0.97246 0.86171 1.21628 1.00589 0.99198 0.92119 1.20525 0.95124 0.95310 0.95391 1.21973 1.00810 0.96112 1.01367 1.21827 1.01060 1.00255 0.96317 1.21622 0.94400 1.00579 0.96733 0.94036 0.92079 0.92299 0.92040 0.93224 0.86699 0.86979 0.91177 0.85638 0.94503 0.89951 0.92894 0.95559 0.92226 0.89968 0.91733 0.91186 0.90693 0.92695 0.92612 0.93410 0.92120 0.92552 0.92421 0.91493 0.91857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 9.19 71.98 0.66 -1.80 16 2 C -0.09 -1.64 2.45 -10.80 -0.03 -1.67 16 3 H 0.06 1.20 6.43 -2.39 -0.02 1.18 16 4 C -0.11 -2.28 4.22 30.59 0.13 -2.15 16 5 C -0.07 -1.28 1.56 -10.80 -0.02 -1.29 16 6 H 0.06 1.39 6.24 -2.38 -0.01 1.38 16 7 C -0.13 -2.44 3.51 29.85 0.10 -2.34 16 8 C 0.51 14.75 7.41 87.66 0.65 15.40 16 9 O -0.58 -21.05 13.37 -3.04 -0.04 -21.09 16 10 N -0.61 -18.91 2.94 -817.24 -2.40 -21.32 16 11 C 0.10 2.55 6.54 86.56 0.57 3.12 16 12 C 0.13 4.29 6.69 86.56 0.58 4.87 16 13 N -0.62 -28.03 2.74 -697.44 -1.91 -29.94 16 14 C -0.25 -13.42 10.03 84.03 0.84 -12.57 16 15 H 0.06 3.72 8.06 -2.91 -0.02 3.69 16 16 C -0.03 -1.69 5.23 84.86 0.44 -1.25 16 17 N -0.95 -58.85 13.97 21.65 0.30 -58.55 16 18 Si 0.94 46.76 24.37 68.60 1.67 48.43 16 19 H -0.28 -13.39 6.64 99.48 0.66 -12.72 16 20 H -0.31 -15.63 7.11 99.48 0.71 -14.92 16 21 H -0.27 -12.98 6.63 99.48 0.66 -12.32 16 22 C 0.12 4.99 4.36 86.40 0.38 5.37 16 23 C 0.11 3.93 6.59 86.40 0.57 4.50 16 24 C -0.10 -1.34 4.01 30.59 0.12 -1.22 16 25 C -0.06 -0.85 0.77 -52.16 -0.04 -0.89 16 26 C -0.15 -2.23 7.78 71.98 0.56 -1.67 16 27 C -0.14 -1.47 8.47 71.98 0.61 -0.86 16 28 C -0.10 -1.35 4.02 30.61 0.12 -1.23 16 29 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 32 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 33 H 0.05 1.39 5.95 -2.39 -0.01 1.37 16 34 H 0.11 1.66 7.90 -2.39 -0.02 1.64 16 35 H 0.11 1.72 7.73 -2.39 -0.02 1.70 16 36 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 37 H 0.13 2.12 5.91 -2.39 -0.01 2.10 16 38 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.08 2.67 7.93 -2.38 -0.02 2.66 16 40 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 41 H 0.03 1.16 7.18 -2.39 -0.02 1.14 16 42 H 0.06 2.84 4.41 -2.39 -0.01 2.83 16 43 H 0.08 3.06 6.99 -2.39 -0.02 3.05 16 44 H 0.06 2.41 8.14 -2.38 -0.02 2.39 16 45 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 46 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 47 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 48 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 49 H 0.05 0.90 4.81 -2.39 -0.01 0.89 16 50 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 51 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 52 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 53 H 0.07 0.87 8.14 -2.38 -0.02 0.86 16 54 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -68.68 388.75 4.63 -64.05 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: 0.75 Total: 14.12 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: 6.26 Total: 4.29 kcal Atomic # 7 Polarization: -105.80 SS G_CDS: -4.01 Total: -109.81 kcal Atomic # 8 Polarization: -21.05 SS G_CDS: -0.04 Total: -21.09 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 1.67 Total: 48.43 kcal Total: -68.68 4.63 -64.05 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359693769.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.278 kcal (2) G-P(sol) polarization free energy of solvation -68.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds