Wall clock time and date at job start Tue Mar 31 2020 15:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09007 * 109.47196 * 2 1 4 4 C 1.52997 * 109.47554 * 240.00017 * 2 1 3 5 5 C 1.52994 * 109.47292 * 180.02562 * 4 2 1 6 6 H 1.08997 * 109.47073 * 299.99706 * 5 4 2 7 7 C 1.53001 * 109.47083 * 179.97438 * 5 4 2 8 8 C 1.50707 * 109.47152 * 65.00000 * 7 5 4 9 9 O 1.21278 * 119.99550 * 359.97438 * 8 7 5 10 10 N 1.34768 * 120.00124 * 180.02562 * 8 7 5 11 11 C 1.46969 * 120.59465 * 359.71920 * 10 8 7 12 12 C 1.53816 * 108.39980 * 124.75784 * 11 10 8 13 13 N 1.46968 * 108.57929 * 49.63931 * 12 11 10 14 14 C 1.36932 * 120.59681 * 124.67043 * 13 12 11 15 15 H 1.07996 * 119.99880 * 208.14191 * 14 13 12 16 16 C 1.38808 * 119.99792 * 28.13700 * 14 13 12 17 17 N 1.31619 * 120.00263 * 17.58693 * 16 14 13 18 18 Si 1.86806 * 119.99906 * 197.58872 * 16 14 13 19 19 H 1.48497 * 109.47029 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47276 * 120.00138 * 18 16 14 21 21 H 1.48504 * 109.47006 * 240.00147 * 18 16 14 22 22 C 1.46963 * 118.80755 * 304.64788 * 13 12 11 23 23 C 1.46965 * 120.59752 * 179.97438 * 10 8 7 24 24 C 1.52995 * 109.47586 * 59.99873 * 5 4 2 25 25 C 1.53007 * 109.47081 * 299.99994 * 24 5 4 26 26 C 1.52993 * 109.47393 * 179.97438 * 25 24 5 27 27 C 1.52996 * 109.47114 * 300.00101 * 25 24 5 28 28 C 1.53002 * 109.46889 * 119.99653 * 2 1 3 29 29 H 1.09002 * 109.47820 * 300.00285 * 1 2 3 30 30 H 1.09007 * 109.47418 * 60.00305 * 1 2 3 31 31 H 1.08997 * 109.47158 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47317 * 59.99768 * 4 2 1 33 33 H 1.09007 * 109.46855 * 300.00191 * 4 2 1 34 34 H 1.09003 * 109.47333 * 184.99348 * 7 5 4 35 35 H 1.08994 * 109.47252 * 305.00014 * 7 5 4 36 36 H 1.09002 * 109.61192 * 244.53874 * 11 10 8 37 37 H 1.08996 * 109.60967 * 5.05448 * 11 10 8 38 38 H 1.08997 * 109.74263 * 289.84712 * 12 11 10 39 39 H 1.09004 * 109.53324 * 169.30189 * 12 11 10 40 40 H 0.97002 * 120.00178 * 179.97438 * 17 16 14 41 41 H 1.09003 * 109.61175 * 295.47665 * 22 13 12 42 42 H 1.09006 * 109.60974 * 174.97575 * 22 13 12 43 43 H 1.09004 * 109.60554 * 354.94909 * 23 10 8 44 44 H 1.08997 * 109.61009 * 115.45685 * 23 10 8 45 45 H 1.08998 * 109.47562 * 59.99712 * 24 5 4 46 46 H 1.08996 * 109.47641 * 179.97438 * 24 5 4 47 47 H 1.09005 * 109.47259 * 59.99612 * 26 25 24 48 48 H 1.09001 * 109.47510 * 180.02562 * 26 25 24 49 49 H 1.09007 * 109.46994 * 300.00023 * 26 25 24 50 50 H 1.09007 * 109.47470 * 59.99481 * 27 25 24 51 51 H 1.08999 * 109.47610 * 179.97438 * 27 25 24 52 52 H 1.09007 * 109.47089 * 300.00206 * 27 25 24 53 53 H 1.08997 * 109.47089 * 60.00727 * 28 2 1 54 54 H 1.08999 * 109.46995 * 299.99836 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5700 -0.7217 -1.2488 6 1 3.9336 0.3058 -1.2486 7 6 4.0800 -1.4435 -2.4977 8 6 3.6819 -0.6654 -3.7254 9 8 3.0518 0.3647 -3.6125 10 7 4.0251 -1.1148 -4.9487 11 6 4.7929 -2.3588 -5.1004 12 6 4.0133 -3.2996 -6.0348 13 7 3.6319 -2.5513 -7.2408 14 6 3.9806 -3.0079 -8.4838 15 1 4.1223 -2.3096 -9.2954 16 6 4.1520 -4.3682 -8.7006 17 7 3.6581 -5.2383 -7.8453 18 14 5.0836 -4.9640 -10.2061 19 1 5.5334 -3.7954 -11.0044 20 1 6.2647 -5.7548 -9.7765 21 1 4.1926 -5.8154 -11.0347 22 6 2.8690 -1.3044 -7.0888 23 6 3.6432 -0.3668 -6.1548 24 6 4.0795 -1.4433 0.0004 25 6 3.5695 -0.7220 1.2497 26 6 4.0784 -1.4438 2.4989 27 6 4.0799 0.7203 1.2499 28 6 2.0399 -0.7212 1.2493 29 1 -0.3635 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 1.6767 -0.2075 -2.1392 33 1 1.6766 -1.7489 -1.2492 34 1 5.1663 -1.5220 -2.4539 35 1 3.6451 -2.4419 -2.5435 36 1 5.7687 -2.1362 -5.5321 37 1 4.9201 -2.8312 -4.1264 38 1 3.1175 -3.6609 -5.5298 39 1 4.6451 -4.1433 -6.3124 40 1 3.7776 -6.1889 -7.9970 41 1 1.8916 -1.5236 -6.6589 42 1 2.7450 -0.8304 -8.0626 43 1 3.0111 0.4767 -5.8772 44 1 4.5389 -0.0053 -6.6599 45 1 3.7159 -2.4708 0.0003 46 1 5.1695 -1.4441 0.0004 47 1 5.1685 -1.4446 2.4994 48 1 3.7147 -0.9303 3.3889 49 1 3.7144 -2.4713 2.4985 50 1 3.7169 1.2344 0.3599 51 1 3.7162 1.2344 2.1397 52 1 5.1699 0.7200 1.2501 53 1 1.6766 -1.7489 1.2493 54 1 1.6765 -0.2073 2.1392 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359693771.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:34 Heat of formation + Delta-G solvation = -59.203733 kcal Electronic energy + Delta-G solvation = -29137.966571 eV Core-core repulsion = 25494.263811 eV Total energy + Delta-G solvation = -3643.702760 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.44835 -40.29864 -38.40310 -35.58981 -34.97740 -34.46672 -33.18910 -31.84932 -29.33918 -28.19956 -27.94594 -27.38097 -27.09852 -25.38698 -24.42532 -22.60518 -21.41489 -21.32007 -19.98136 -19.41408 -18.59633 -17.67218 -16.99296 -16.59668 -16.54795 -15.97831 -15.80583 -15.53164 -15.47334 -15.30533 -14.97032 -14.92018 -14.61103 -14.22366 -14.04140 -13.70139 -13.40153 -13.35858 -13.22952 -13.10123 -12.97763 -12.71042 -12.61963 -12.56614 -12.48585 -12.44547 -12.24316 -12.18476 -12.03338 -11.89469 -11.76804 -11.65638 -11.63054 -11.54455 -11.04880 -10.94292 -10.76592 -10.63238 -10.41109 -9.76782 -8.65902 -7.89445 -5.37488 1.47199 1.50188 1.60168 1.71585 2.11602 2.51060 3.24956 3.57220 3.59888 3.69317 3.75017 3.90770 4.11270 4.20268 4.23602 4.26596 4.31537 4.39073 4.41553 4.47175 4.53326 4.58322 4.66988 4.69197 4.70768 4.77298 4.79666 4.81692 4.83869 4.86317 4.89799 4.96581 5.01564 5.05253 5.07642 5.11830 5.17435 5.20228 5.23897 5.26300 5.30773 5.42582 5.45838 5.53495 5.56207 5.59271 5.61297 5.63640 5.68713 5.75496 6.34872 6.57102 7.10305 7.26684 7.77756 8.31423 9.15655 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.022410 B = 0.002743 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.170039 B =10206.200963 C =10549.942186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.088 4.088 3 H 0.063 0.937 4 C -0.111 4.111 5 C -0.063 4.063 6 H 0.066 0.934 7 C -0.132 4.132 8 C 0.507 3.493 9 O -0.580 6.580 10 N -0.606 5.606 11 C 0.096 3.904 12 C 0.163 3.837 13 N -0.609 5.609 14 C -0.265 4.265 15 H 0.067 0.933 16 C -0.045 4.045 17 N -0.932 5.932 18 Si 0.968 3.032 19 H -0.269 1.269 20 H -0.286 1.286 21 H -0.295 1.295 22 C 0.133 3.867 23 C 0.106 3.894 24 C -0.100 4.100 25 C -0.063 4.063 26 C -0.137 4.137 27 C -0.144 4.144 28 C -0.097 4.097 29 H 0.064 0.936 30 H 0.041 0.959 31 H 0.053 0.947 32 H 0.049 0.951 33 H 0.051 0.949 34 H 0.113 0.887 35 H 0.099 0.901 36 H 0.068 0.932 37 H 0.108 0.892 38 H -0.001 1.001 39 H 0.075 0.925 40 H 0.252 0.748 41 H 0.006 0.994 42 H 0.070 0.930 43 H 0.084 0.916 44 H 0.067 0.933 45 H 0.066 0.934 46 H 0.072 0.928 47 H 0.058 0.942 48 H 0.058 0.942 49 H 0.055 0.945 50 H 0.049 0.951 51 H 0.057 0.943 52 H 0.056 0.944 53 H 0.061 0.939 54 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.067 7.846 20.489 22.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.107 4.107 3 H 0.082 0.918 4 C -0.149 4.149 5 C -0.082 4.082 6 H 0.085 0.915 7 C -0.171 4.171 8 C 0.297 3.703 9 O -0.462 6.462 10 N -0.338 5.338 11 C -0.028 4.028 12 C 0.037 3.963 13 N -0.333 5.333 14 C -0.395 4.395 15 H 0.085 0.915 16 C -0.241 4.241 17 N -0.577 5.577 18 Si 0.796 3.204 19 H -0.193 1.193 20 H -0.212 1.212 21 H -0.222 1.222 22 C 0.006 3.994 23 C -0.018 4.018 24 C -0.137 4.137 25 C -0.063 4.063 26 C -0.195 4.195 27 C -0.201 4.201 28 C -0.134 4.134 29 H 0.083 0.917 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.131 0.869 35 H 0.117 0.883 36 H 0.087 0.913 37 H 0.126 0.874 38 H 0.017 0.983 39 H 0.093 0.907 40 H 0.061 0.939 41 H 0.024 0.976 42 H 0.088 0.912 43 H 0.102 0.898 44 H 0.086 0.914 45 H 0.085 0.915 46 H 0.091 0.909 47 H 0.077 0.923 48 H 0.077 0.923 49 H 0.075 0.925 50 H 0.068 0.932 51 H 0.076 0.924 52 H 0.075 0.925 53 H 0.079 0.921 54 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.745 8.214 20.512 22.165 hybrid contribution -0.005 -0.617 -1.374 1.506 sum 1.740 7.597 19.138 20.664 Atomic orbital electron populations 1.21808 0.95383 1.01669 1.01420 1.21101 0.95301 0.99453 0.94804 0.91823 1.21688 0.95324 0.99840 0.98030 1.20864 0.95382 0.99343 0.92563 0.91525 1.21832 1.04004 1.00041 0.91270 1.21317 0.78424 0.85412 0.85125 1.90588 1.42203 1.26642 1.86725 1.48198 1.54721 1.25065 1.05864 1.22548 0.94574 0.84291 1.01375 1.21108 0.95952 0.93612 0.85673 1.44274 1.62143 1.24201 1.02662 1.19533 1.40455 0.90664 0.88869 0.91487 1.25780 1.01143 0.96356 1.00837 1.70167 1.47099 1.01024 1.39451 0.85203 0.77978 0.77958 0.79224 1.19294 1.21215 1.22213 1.21336 0.92437 0.87733 0.97853 1.21934 0.99680 0.94614 0.85586 1.21642 1.00684 0.98950 0.92419 1.20502 0.95018 0.95642 0.95138 1.21826 1.01140 1.00094 0.96391 1.21960 1.00911 0.95660 1.01549 1.21614 0.94579 1.00376 0.96870 0.91705 0.93963 0.92795 0.93206 0.93039 0.86922 0.88325 0.91329 0.87403 0.98333 0.90691 0.93864 0.97597 0.91174 0.89806 0.91447 0.91525 0.90948 0.92260 0.92275 0.92541 0.93220 0.92374 0.92474 0.92074 0.91458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 9.19 71.98 0.66 -2.20 16 2 C -0.09 -1.82 2.45 -10.80 -0.03 -1.85 16 3 H 0.06 1.41 6.43 -2.38 -0.02 1.39 16 4 C -0.11 -2.78 4.22 30.59 0.13 -2.65 16 5 C -0.06 -1.40 1.56 -10.80 -0.02 -1.42 16 6 H 0.07 1.68 6.24 -2.39 -0.01 1.66 16 7 C -0.13 -3.16 3.51 29.85 0.10 -3.06 16 8 C 0.51 16.61 7.41 87.66 0.65 17.26 16 9 O -0.58 -22.13 13.37 -3.02 -0.04 -22.17 16 10 N -0.61 -21.17 2.94 -817.22 -2.40 -23.57 16 11 C 0.10 3.26 6.54 86.56 0.57 3.83 16 12 C 0.16 7.38 5.53 86.57 0.48 7.86 16 13 N -0.61 -29.97 2.97 -697.42 -2.07 -32.04 16 14 C -0.27 -14.17 9.58 84.03 0.80 -13.37 16 15 H 0.07 3.51 7.89 -2.91 -0.02 3.49 16 16 C -0.05 -2.44 4.90 84.86 0.42 -2.03 16 17 N -0.93 -52.94 11.20 21.65 0.24 -52.70 16 18 Si 0.97 43.33 29.59 68.60 2.03 45.36 16 19 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 20 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 21 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 22 C 0.13 5.66 6.67 86.40 0.58 6.24 16 23 C 0.11 3.90 6.59 86.40 0.57 4.47 16 24 C -0.10 -1.69 4.01 30.59 0.12 -1.57 16 25 C -0.06 -0.97 0.77 -52.20 -0.04 -1.01 16 26 C -0.14 -1.74 8.47 71.98 0.61 -1.13 16 27 C -0.14 -2.28 7.78 71.98 0.56 -1.72 16 28 C -0.10 -1.61 4.01 30.58 0.12 -1.48 16 29 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.04 0.92 8.14 -2.38 -0.02 0.90 16 31 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.05 1.59 5.95 -2.39 -0.01 1.57 16 33 H 0.05 1.28 8.14 -2.38 -0.02 1.26 16 34 H 0.11 2.18 7.90 -2.39 -0.02 2.16 16 35 H 0.10 2.27 7.73 -2.39 -0.02 2.26 16 36 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.11 2.88 5.91 -2.39 -0.01 2.86 16 38 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 39 H 0.07 3.77 5.99 -2.39 -0.01 3.76 16 40 H 0.25 13.82 8.31 -92.71 -0.77 13.05 16 41 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 42 H 0.07 2.86 7.93 -2.38 -0.02 2.84 16 43 H 0.08 3.04 6.99 -2.39 -0.02 3.02 16 44 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 45 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 47 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 48 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 49 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 50 H 0.05 0.94 4.81 -2.38 -0.01 0.93 16 51 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 52 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 53 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 54 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -63.37 395.10 4.89 -58.48 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: 0.84 Total: 20.46 kcal Atomic # 6 Polarization: -0.11 SS G_CDS: 6.29 Total: 6.18 kcal Atomic # 7 Polarization: -104.08 SS G_CDS: -4.23 Total: -108.31 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: -0.04 Total: -22.17 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -63.37 4.89 -58.48 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359693771.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.723 kcal (2) G-P(sol) polarization free energy of solvation -63.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds