Wall clock time and date at job start Tue Mar 31 2020 15:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47680 * 2 1 4 4 C 1.53005 * 109.47088 * 239.99965 * 2 1 3 5 5 C 1.53004 * 109.46897 * 299.99920 * 4 2 1 6 6 C 1.52998 * 109.47073 * 299.99904 * 5 4 2 7 7 C 1.52994 * 109.47407 * 60.00534 * 6 5 4 8 8 H 1.09004 * 109.47467 * 59.99501 * 7 6 5 9 9 C 1.52998 * 109.47407 * 180.02562 * 7 6 5 10 10 C 1.50701 * 109.46644 * 294.99749 * 9 7 6 11 11 O 1.21279 * 120.00370 * 359.97438 * 10 9 7 12 12 N 1.34781 * 119.99741 * 180.02562 * 10 9 7 13 13 C 1.46503 * 119.99843 * 179.97438 * 12 10 9 14 14 C 1.53005 * 109.46987 * 179.97438 * 13 12 10 15 15 H 1.09001 * 109.49356 * 54.93529 * 14 13 12 16 16 C 1.53037 * 109.49491 * 175.00236 * 14 13 12 17 17 C 1.53043 * 109.53645 * 181.31894 * 16 14 13 18 18 C 1.53189 * 109.31135 * 298.63268 * 17 16 14 19 19 N 1.46926 * 108.77817 * 54.63238 * 18 17 16 20 20 C 1.36935 * 120.62985 * 126.40815 * 19 18 17 21 21 H 1.08005 * 120.00183 * 207.67715 * 20 19 18 22 22 C 1.38818 * 119.99829 * 27.68590 * 20 19 18 23 23 N 1.31609 * 120.00126 * 17.34961 * 22 20 19 24 24 Si 1.86796 * 119.99840 * 197.35214 * 22 20 19 25 25 H 1.48506 * 109.47398 * 59.99729 * 24 22 20 26 26 H 1.48498 * 109.47272 * 179.97438 * 24 22 20 27 27 H 1.48505 * 109.47301 * 299.99983 * 24 22 20 28 28 C 1.46927 * 118.73925 * 306.39666 * 19 18 17 29 29 C 1.53005 * 109.47214 * 120.00044 * 2 1 3 30 30 H 1.09001 * 109.47024 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46995 * 300.00047 * 1 2 3 32 32 H 1.08994 * 109.47105 * 60.00133 * 1 2 3 33 33 H 1.09004 * 109.46846 * 180.02562 * 4 2 1 34 34 H 1.08994 * 109.47228 * 59.99977 * 4 2 1 35 35 H 1.09000 * 109.46953 * 179.97438 * 5 4 2 36 36 H 1.08994 * 109.47173 * 60.00386 * 5 4 2 37 37 H 1.08994 * 109.47192 * 299.99835 * 6 5 4 38 38 H 1.09008 * 109.46479 * 180.02562 * 6 5 4 39 39 H 1.09000 * 109.47158 * 54.99517 * 9 7 6 40 40 H 1.08996 * 109.46926 * 175.00106 * 9 7 6 41 41 H 0.96994 * 119.99993 * 359.97438 * 12 10 9 42 42 H 1.09000 * 109.47244 * 299.99445 * 13 12 10 43 43 H 1.09004 * 109.47223 * 59.99519 * 13 12 10 44 44 H 1.09002 * 109.45960 * 301.33354 * 16 14 13 45 45 H 1.08999 * 109.46485 * 61.30790 * 16 14 13 46 46 H 1.08996 * 109.49951 * 58.58288 * 17 16 14 47 47 H 1.08996 * 109.49505 * 178.68224 * 17 16 14 48 48 H 1.08994 * 109.58725 * 174.42361 * 18 17 16 49 49 H 1.09005 * 109.58390 * 294.70868 * 18 17 16 50 50 H 0.97002 * 120.00421 * 180.02562 * 23 22 20 51 51 H 1.09001 * 109.58328 * 293.81778 * 28 19 18 52 52 H 1.09001 * 109.58948 * 173.39197 * 28 19 18 53 53 H 1.09000 * 109.47065 * 299.99866 * 29 2 1 54 54 H 1.09004 * 109.47122 * 179.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5300 -2.1638 -1.2492 6 6 2.0400 -2.8850 0.0000 7 6 1.5300 -2.1638 1.2493 8 1 0.4399 -2.1638 1.2493 9 6 2.0406 -2.8847 2.4985 10 6 1.4402 -4.2654 2.5622 11 8 0.6786 -4.6363 1.6943 12 7 1.7488 -5.0879 3.5844 13 6 1.1647 -6.4300 3.6467 14 6 1.6754 -7.1510 4.8959 15 1 1.4667 -6.5441 5.7770 16 6 0.9715 -8.5034 5.0287 17 6 1.4574 -9.2110 6.2957 18 6 2.9654 -9.4591 6.1907 19 7 3.6371 -8.1812 5.9179 20 6 4.6644 -7.7491 6.7137 21 1 4.8569 -6.6917 6.8204 22 6 5.4584 -8.6702 7.3831 23 7 5.4628 -9.9315 7.0071 24 14 6.5207 -8.1196 8.8175 25 1 5.6572 -7.5491 9.8827 26 1 7.2668 -9.2847 9.3569 27 1 7.4821 -7.0870 8.3539 28 6 3.1859 -7.3757 4.7750 29 6 2.0400 -0.7213 1.2493 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 3.1300 -0.7217 -1.2490 34 1 1.6767 -0.2075 -2.1392 35 1 1.8929 -2.6775 -2.1394 36 1 0.4400 -2.1638 -1.2493 37 1 3.1299 -2.8850 0.0000 38 1 1.6769 -3.9128 -0.0002 39 1 3.1269 -2.9625 2.4546 40 1 1.7521 -2.3217 3.3861 41 1 2.3576 -4.7912 4.2788 42 1 0.0784 -6.3519 3.6905 43 1 1.4530 -6.9933 2.7591 44 1 -0.1056 -8.3476 5.0902 45 1 1.2003 -9.1189 4.1587 46 1 1.2513 -8.5850 7.1639 47 1 0.9385 -10.1636 6.4020 48 1 3.3340 -9.8726 7.1294 49 1 3.1649 -10.1595 5.3796 50 1 6.0174 -10.5752 7.4750 51 1 3.4035 -7.9043 3.8469 52 1 3.6998 -6.4145 4.7796 53 1 1.6767 -0.2074 2.1393 54 1 3.1301 -0.7217 1.2490 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359723590.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:14:32 Heat of formation + Delta-G solvation = -78.567374 kcal Electronic energy + Delta-G solvation = -28121.424933 eV Core-core repulsion = 24476.882502 eV Total energy + Delta-G solvation = -3644.542431 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.15083 -39.84979 -39.12848 -36.22667 -34.64482 -34.02306 -32.39672 -32.29937 -31.86573 -28.58659 -27.56720 -27.23637 -26.24108 -23.83708 -23.14996 -22.87200 -22.14897 -21.23510 -20.48937 -19.49546 -18.68123 -17.76544 -17.01985 -16.81924 -16.61124 -16.32160 -15.87071 -15.59322 -15.36141 -15.25888 -15.04934 -14.71566 -14.51390 -14.33881 -14.04186 -13.91856 -13.74146 -13.55988 -13.43845 -13.01966 -12.95654 -12.83804 -12.61615 -12.48930 -12.36083 -12.29065 -12.27154 -11.97544 -11.83650 -11.81898 -11.69047 -11.58310 -11.33552 -11.18910 -11.10209 -10.97610 -10.81869 -10.52276 -10.44482 -9.97116 -8.68177 -7.86260 -5.31854 1.47728 1.50369 1.56781 1.74839 2.32947 2.51825 3.28385 3.60421 3.76206 3.78600 3.83998 3.99655 4.01533 4.02692 4.09980 4.23862 4.33955 4.40349 4.43727 4.54659 4.57745 4.59782 4.62081 4.68354 4.72803 4.76251 4.82196 4.88332 4.89668 4.90851 4.92152 5.00903 5.05687 5.09750 5.10918 5.16690 5.20506 5.23965 5.33119 5.35755 5.37668 5.42189 5.45959 5.50691 5.54549 5.58441 5.64048 5.67080 5.71776 5.78114 6.39184 6.64343 7.15186 7.34754 7.86764 8.38998 9.19988 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.018315 B = 0.002395 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.453045 B =11687.801100 C =12600.060768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.090 4.090 3 H 0.079 0.921 4 C -0.112 4.112 5 C -0.118 4.118 6 C -0.119 4.119 7 C -0.067 4.067 8 H 0.065 0.935 9 C -0.135 4.135 10 C 0.507 3.493 11 O -0.579 6.579 12 N -0.723 5.723 13 C 0.139 3.861 14 C -0.099 4.099 15 H 0.077 0.923 16 C -0.098 4.098 17 C -0.130 4.130 18 C 0.172 3.828 19 N -0.610 5.610 20 C -0.262 4.262 21 H 0.072 0.928 22 C -0.054 4.054 23 N -0.937 5.937 24 Si 0.967 3.033 25 H -0.277 1.277 26 H -0.298 1.298 27 H -0.274 1.274 28 C 0.154 3.846 29 C -0.106 4.106 30 H 0.049 0.951 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.057 0.943 38 H 0.051 0.949 39 H 0.107 0.893 40 H 0.115 0.885 41 H 0.411 0.589 42 H 0.068 0.932 43 H 0.051 0.949 44 H 0.079 0.921 45 H 0.053 0.947 46 H 0.053 0.947 47 H 0.068 0.932 48 H 0.052 0.948 49 H -0.009 1.009 50 H 0.249 0.751 51 H 0.003 0.997 52 H 0.058 0.942 53 H 0.072 0.928 54 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.729 19.238 -11.119 24.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.109 4.109 3 H 0.097 0.903 4 C -0.149 4.149 5 C -0.156 4.156 6 C -0.156 4.156 7 C -0.086 4.086 8 H 0.083 0.917 9 C -0.175 4.175 10 C 0.295 3.705 11 O -0.460 6.460 12 N -0.375 5.375 13 C 0.014 3.986 14 C -0.120 4.120 15 H 0.095 0.905 16 C -0.136 4.136 17 C -0.169 4.169 18 C 0.046 3.954 19 N -0.333 5.333 20 C -0.392 4.392 21 H 0.090 0.910 22 C -0.249 4.249 23 N -0.583 5.583 24 Si 0.795 3.205 25 H -0.203 1.203 26 H -0.224 1.224 27 H -0.199 1.199 28 C 0.028 3.972 29 C -0.144 4.144 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.125 0.875 40 H 0.133 0.867 41 H 0.247 0.753 42 H 0.086 0.914 43 H 0.070 0.930 44 H 0.097 0.903 45 H 0.071 0.929 46 H 0.072 0.928 47 H 0.087 0.913 48 H 0.070 0.930 49 H 0.009 0.991 50 H 0.058 0.942 51 H 0.021 0.979 52 H 0.076 0.924 53 H 0.091 0.909 54 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.157 18.842 -11.665 24.377 hybrid contribution 1.109 -0.553 0.984 1.582 sum -9.047 18.289 -10.682 23.031 Atomic orbital electron populations 1.21936 0.95589 1.01591 1.01722 1.21094 0.95773 0.99332 0.94664 0.90269 1.21564 1.00570 0.94902 0.97883 1.21516 1.00575 0.96176 0.97287 1.21649 0.99899 0.99370 0.94723 1.20879 1.00317 0.94667 0.92693 0.91708 1.21835 1.02762 0.91286 1.01573 1.21299 0.80725 0.88057 0.80372 1.90640 1.38003 1.77689 1.39630 1.46125 1.49101 1.15210 1.27089 1.21192 0.97668 0.82412 0.97321 1.21705 0.96304 0.96880 0.97076 0.90491 1.21343 0.99689 0.95029 0.97533 1.21997 0.96812 1.00143 0.97934 1.20631 0.89769 0.86551 0.98408 1.44315 1.37236 1.21410 1.30298 1.19519 1.06588 0.91975 1.21090 0.91038 1.25821 0.99519 0.96198 1.03342 1.70194 1.42996 1.03392 1.41735 0.85344 0.78512 0.76792 0.79821 1.20315 1.22414 1.19928 1.21007 0.92946 0.94579 0.88634 1.21619 1.00952 0.93659 0.98154 0.93166 0.92456 0.92575 0.91823 0.91666 0.92589 0.92520 0.92462 0.92992 0.87489 0.86676 0.75324 0.91369 0.93046 0.90272 0.92855 0.92774 0.91320 0.92971 0.99070 0.94211 0.97932 0.92351 0.90895 0.91224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 8.50 71.98 0.61 -1.46 16 2 C -0.09 -1.17 3.19 -10.79 -0.03 -1.20 16 3 H 0.08 0.86 8.14 -2.39 -0.02 0.85 16 4 C -0.11 -1.57 5.45 30.60 0.17 -1.41 16 5 C -0.12 -2.12 5.65 30.59 0.17 -1.95 16 6 C -0.12 -2.46 4.94 30.59 0.15 -2.31 16 7 C -0.07 -1.19 1.56 -10.79 -0.02 -1.21 16 8 H 0.06 1.38 6.24 -2.38 -0.01 1.36 16 9 C -0.14 -2.30 5.17 29.85 0.15 -2.15 16 10 C 0.51 12.60 7.55 87.66 0.66 13.26 16 11 O -0.58 -18.66 13.97 -3.03 -0.04 -18.70 16 12 N -0.72 -17.42 5.33 -463.03 -2.47 -19.89 16 13 C 0.14 3.78 5.07 86.38 0.44 4.22 16 14 C -0.10 -3.05 2.37 -10.72 -0.03 -3.08 16 15 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 16 C -0.10 -3.02 5.17 30.62 0.16 -2.86 16 17 C -0.13 -4.72 6.08 30.67 0.19 -4.53 16 18 C 0.17 8.27 5.31 86.36 0.46 8.73 16 19 N -0.61 -29.88 2.99 -699.09 -2.09 -31.97 16 20 C -0.26 -13.99 9.59 84.04 0.81 -13.18 16 21 H 0.07 3.64 7.89 -2.91 -0.02 3.61 16 22 C -0.05 -2.96 4.91 84.87 0.42 -2.54 16 23 N -0.94 -55.43 11.19 21.65 0.24 -55.19 16 24 Si 0.97 44.06 29.59 68.60 2.03 46.09 16 25 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 26 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 27 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 28 C 0.15 6.05 5.60 86.36 0.48 6.53 16 29 C -0.11 -1.41 4.73 30.60 0.14 -1.26 16 30 H 0.05 0.84 4.81 -2.39 -0.01 0.83 16 31 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.06 0.69 8.14 -2.39 -0.02 0.68 16 33 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.06 1.09 6.43 -2.39 -0.02 1.08 16 37 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.05 1.40 5.96 -2.38 -0.01 1.39 16 39 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.41 8.56 7.71 -92.71 -0.71 7.84 16 42 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 44 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 45 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 46 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 47 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 48 H 0.05 2.85 6.04 -2.39 -0.01 2.83 16 49 H -0.01 -0.46 8.14 -2.38 -0.02 -0.48 16 50 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 51 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 52 H 0.06 2.15 7.14 -2.39 -0.02 2.13 16 53 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 54 H 0.07 0.85 8.14 -2.38 -0.02 0.84 16 Total: -1.00 -66.32 398.59 2.74 -63.58 By element: Atomic # 1 Polarization: 22.33 SS G_CDS: 0.14 Total: 22.46 kcal Atomic # 6 Polarization: -11.32 SS G_CDS: 4.93 Total: -6.39 kcal Atomic # 7 Polarization: -102.72 SS G_CDS: -4.32 Total: -107.04 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: -0.04 Total: -18.70 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -66.32 2.74 -63.58 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359723590.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.985 kcal (2) G-P(sol) polarization free energy of solvation -66.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds