Wall clock time and date at job start Tue Mar 31 2020 15:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47496 * 2 1 4 4 C 1.52996 * 109.47132 * 239.99115 * 2 1 3 5 5 C 1.52995 * 109.47336 * 300.00303 * 4 2 1 6 6 C 1.52997 * 109.47268 * 299.99941 * 5 4 2 7 7 C 1.52998 * 109.47261 * 59.99829 * 6 5 4 8 8 H 1.09007 * 109.46816 * 59.99951 * 7 6 5 9 9 C 1.52997 * 109.47261 * 180.02562 * 7 6 5 10 10 C 1.50700 * 109.47406 * 295.00052 * 9 7 6 11 11 O 1.21284 * 119.99641 * 359.97438 * 10 9 7 12 12 N 1.34775 * 120.00018 * 179.97438 * 10 9 7 13 13 C 1.46503 * 119.99466 * 180.02562 * 12 10 9 14 14 C 1.53009 * 109.46570 * 180.02562 * 13 12 10 15 15 H 1.09001 * 109.49379 * 305.06244 * 14 13 12 16 16 C 1.53045 * 109.49363 * 184.99957 * 14 13 12 17 17 C 1.53037 * 109.53329 * 178.68007 * 16 14 13 18 18 C 1.53194 * 109.31251 * 61.36761 * 17 16 14 19 19 N 1.46923 * 108.77557 * 305.35842 * 18 17 16 20 20 C 1.36933 * 120.63519 * 233.60771 * 19 18 17 21 21 H 1.07995 * 120.00083 * 151.84183 * 20 19 18 22 22 C 1.38816 * 119.99644 * 331.84789 * 20 19 18 23 23 N 1.31613 * 120.00326 * 343.06639 * 22 20 19 24 24 Si 1.86803 * 119.99803 * 163.06871 * 22 20 19 25 25 H 1.48500 * 109.47366 * 89.99554 * 24 22 20 26 26 H 1.48492 * 109.47036 * 209.99901 * 24 22 20 27 27 H 1.48498 * 109.46918 * 329.99633 * 24 22 20 28 28 C 1.46927 * 118.73446 * 53.61216 * 19 18 17 29 29 C 1.52995 * 109.47119 * 300.00263 * 7 6 5 30 30 H 1.08997 * 109.47197 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47356 * 300.00822 * 1 2 3 32 32 H 1.09003 * 109.46928 * 60.00505 * 1 2 3 33 33 H 1.09003 * 109.46903 * 60.00365 * 4 2 1 34 34 H 1.09004 * 109.47114 * 179.97438 * 4 2 1 35 35 H 1.09007 * 109.47022 * 60.00121 * 5 4 2 36 36 H 1.08999 * 109.47139 * 179.97438 * 5 4 2 37 37 H 1.09004 * 109.46761 * 300.00159 * 6 5 4 38 38 H 1.09005 * 109.47166 * 180.02562 * 6 5 4 39 39 H 1.09002 * 109.47125 * 55.00420 * 9 7 6 40 40 H 1.09003 * 109.46900 * 175.00272 * 9 7 6 41 41 H 0.96996 * 120.00257 * 0.02562 * 12 10 9 42 42 H 1.08996 * 109.47327 * 299.99405 * 13 12 10 43 43 H 1.08997 * 109.47649 * 60.00119 * 13 12 10 44 44 H 1.08999 * 109.46221 * 298.70164 * 16 14 13 45 45 H 1.09001 * 109.46013 * 58.67564 * 16 14 13 46 46 H 1.09003 * 109.49460 * 181.31512 * 17 16 14 47 47 H 1.08991 * 109.50137 * 301.37923 * 17 16 14 48 48 H 1.08998 * 109.58586 * 65.15103 * 18 17 16 49 49 H 1.09005 * 109.58718 * 185.42934 * 18 17 16 50 50 H 0.96993 * 120.00453 * 180.02562 * 23 22 20 51 51 H 1.09003 * 109.58789 * 186.60282 * 28 19 18 52 52 H 1.09000 * 109.58856 * 66.17731 * 28 19 18 53 53 H 1.08995 * 109.47381 * 299.99695 * 29 7 6 54 54 H 1.09005 * 109.47172 * 179.97438 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 1.5300 -2.1639 -1.2490 6 6 2.0399 -2.8850 0.0003 7 6 1.5300 -2.1637 1.2495 8 1 0.4399 -2.1636 1.2494 9 6 2.0404 -2.8844 2.4988 10 6 1.4400 -4.2652 2.5628 11 8 0.6783 -4.6360 1.6948 12 7 1.7494 -5.0879 3.5845 13 6 1.1660 -6.4303 3.6463 14 6 1.6765 -7.1511 4.8957 15 1 2.7665 -7.1496 4.8967 16 6 1.1676 -8.5944 4.8965 17 6 1.7046 -9.3257 6.1289 18 6 1.1907 -8.6312 7.3940 19 7 1.5514 -7.2083 7.3320 20 6 2.2370 -6.6168 8.3592 21 1 2.8801 -5.7717 8.1632 22 6 2.1054 -7.1037 9.6525 23 7 1.0979 -7.8930 9.9593 24 14 3.3584 -6.6385 10.9576 25 1 2.9193 -5.3978 11.6455 26 1 3.4737 -7.7392 11.9476 27 1 4.6782 -6.4086 10.3170 28 6 1.1623 -6.4319 6.1468 29 6 2.0400 -0.7212 1.2494 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5140 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.6767 -0.2076 -2.1392 34 1 3.1300 -0.7210 -1.2493 35 1 0.4399 -2.1638 -1.2490 36 1 1.8930 -2.6777 -2.1391 37 1 3.1299 -2.8850 0.0003 38 1 1.6769 -3.9128 0.0002 39 1 3.1267 -2.9623 2.4550 40 1 1.7520 -2.3213 3.3864 41 1 2.3582 -4.7912 4.2788 42 1 0.0797 -6.3528 3.6903 43 1 1.4544 -6.9931 2.7585 44 1 0.0778 -8.5953 4.9198 45 1 1.5119 -9.1013 3.9950 46 1 1.3609 -10.3601 6.1166 47 1 2.7942 -9.3043 6.1187 48 1 0.1068 -8.7313 7.4512 49 1 1.6466 -9.0879 8.2725 50 1 1.0057 -8.2329 10.8630 51 1 1.6014 -5.4358 6.2021 52 1 0.0761 -6.3527 6.1023 53 1 3.1299 -0.7212 1.2494 54 1 1.6763 -0.2071 2.1391 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359723591.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:14:36 Heat of formation + Delta-G solvation = -78.739016 kcal Electronic energy + Delta-G solvation = -28096.550192 eV Core-core repulsion = 24452.000318 eV Total energy + Delta-G solvation = -3644.549873 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.14986 -39.84842 -39.12689 -36.22507 -34.64472 -34.02309 -32.39208 -32.29678 -31.86520 -28.58632 -27.57285 -27.23685 -26.23892 -23.83769 -23.14379 -22.87105 -22.14578 -21.23984 -20.48335 -19.49633 -18.68107 -17.76580 -17.03257 -16.79917 -16.63683 -16.25839 -15.89573 -15.66811 -15.31641 -15.23962 -15.02415 -14.73563 -14.52534 -14.34031 -14.03606 -13.92564 -13.72264 -13.55636 -13.44700 -13.01366 -12.95507 -12.85165 -12.62140 -12.48451 -12.38550 -12.28580 -12.24273 -11.97557 -11.83399 -11.81870 -11.68816 -11.58193 -11.33737 -11.18833 -11.09491 -10.96956 -10.81532 -10.52837 -10.45084 -9.96937 -8.67278 -7.86406 -5.32369 1.47248 1.49167 1.58416 1.74867 2.32926 2.51680 3.28688 3.60433 3.76206 3.78755 3.84309 3.99712 4.02044 4.02652 4.10186 4.23895 4.34122 4.40483 4.43716 4.54797 4.57771 4.59874 4.62637 4.68195 4.73067 4.77880 4.80427 4.88791 4.89492 4.90849 4.92683 5.00998 5.05087 5.09896 5.11234 5.16531 5.20901 5.24083 5.33241 5.36030 5.38118 5.41746 5.45985 5.50860 5.54577 5.58519 5.64863 5.67266 5.71852 5.78108 6.39478 6.64374 7.15324 7.34775 7.86704 8.39156 9.20042 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.018735 B = 0.002378 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.178531 B =11773.186844 C =12795.807453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.091 4.091 3 H 0.079 0.921 4 C -0.111 4.111 5 C -0.119 4.119 6 C -0.116 4.116 7 C -0.068 4.068 8 H 0.060 0.940 9 C -0.135 4.135 10 C 0.507 3.493 11 O -0.579 6.579 12 N -0.723 5.723 13 C 0.139 3.861 14 C -0.099 4.099 15 H 0.077 0.923 16 C -0.098 4.098 17 C -0.130 4.130 18 C 0.173 3.827 19 N -0.610 5.610 20 C -0.261 4.261 21 H 0.072 0.928 22 C -0.054 4.054 23 N -0.937 5.937 24 Si 0.967 3.033 25 H -0.285 1.285 26 H -0.296 1.296 27 H -0.267 1.267 28 C 0.154 3.846 29 C -0.107 4.107 30 H 0.049 0.951 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.053 0.947 36 H 0.058 0.942 37 H 0.061 0.939 38 H 0.053 0.947 39 H 0.113 0.887 40 H 0.109 0.891 41 H 0.411 0.589 42 H 0.051 0.949 43 H 0.068 0.932 44 H 0.053 0.947 45 H 0.079 0.921 46 H 0.068 0.932 47 H 0.054 0.946 48 H -0.009 1.009 49 H 0.051 0.949 50 H 0.249 0.751 51 H 0.058 0.942 52 H 0.003 0.997 53 H 0.073 0.927 54 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.279 12.684 -20.574 24.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.109 4.109 3 H 0.097 0.903 4 C -0.148 4.148 5 C -0.156 4.156 6 C -0.154 4.154 7 C -0.087 4.087 8 H 0.078 0.922 9 C -0.174 4.174 10 C 0.296 3.704 11 O -0.460 6.460 12 N -0.375 5.375 13 C 0.014 3.986 14 C -0.120 4.120 15 H 0.095 0.905 16 C -0.136 4.136 17 C -0.169 4.169 18 C 0.047 3.953 19 N -0.333 5.333 20 C -0.391 4.391 21 H 0.089 0.911 22 C -0.249 4.249 23 N -0.583 5.583 24 Si 0.795 3.205 25 H -0.212 1.212 26 H -0.222 1.222 27 H -0.192 1.192 28 C 0.028 3.972 29 C -0.144 4.144 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.131 0.869 40 H 0.127 0.873 41 H 0.247 0.753 42 H 0.070 0.930 43 H 0.086 0.914 44 H 0.071 0.929 45 H 0.097 0.903 46 H 0.087 0.913 47 H 0.072 0.928 48 H 0.009 0.991 49 H 0.070 0.930 50 H 0.058 0.942 51 H 0.077 0.923 52 H 0.021 0.979 53 H 0.091 0.909 54 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.707 12.353 -21.024 24.665 hybrid contribution 0.251 -0.151 1.557 1.584 sum 3.959 12.203 -19.467 23.314 Atomic orbital electron populations 1.21947 0.95842 1.01538 1.01620 1.21097 0.95577 0.99391 0.94823 0.90289 1.21554 1.00691 0.94900 0.97675 1.21522 1.00469 0.96187 0.97442 1.21632 1.00074 0.99312 0.94353 1.20884 1.00160 0.94735 0.92935 0.92171 1.21832 1.03024 0.91221 1.01358 1.21297 0.80732 0.88008 0.80412 1.90642 1.37860 1.77630 1.39846 1.46122 1.49076 1.15364 1.26951 1.21192 0.97418 0.82672 0.97312 1.21706 1.00830 0.95887 0.93538 0.90505 1.21344 1.00034 0.94300 0.97917 1.21997 1.00299 0.98815 0.95775 1.20623 0.94859 0.84029 0.95795 1.44312 1.65535 1.05741 1.17682 1.19535 1.18577 1.14250 0.86711 0.91069 1.25833 0.98912 1.01000 0.99145 1.70194 1.30236 1.38809 1.19103 0.85289 0.79548 0.76865 0.78820 1.21201 1.22214 1.19197 1.21009 0.95485 0.94326 0.86359 1.21615 1.01097 0.93671 0.98011 0.93220 0.92733 0.92534 0.91736 0.91522 0.92817 0.92313 0.91997 0.92859 0.86887 0.87288 0.75321 0.93033 0.91381 0.92853 0.90280 0.91329 0.92755 0.99081 0.93017 0.94217 0.92339 0.97921 0.90854 0.91322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 8.50 71.98 0.61 -1.61 16 2 C -0.09 -1.18 3.20 -10.79 -0.03 -1.22 16 3 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 4 C -0.11 -1.48 5.45 30.59 0.17 -1.32 16 5 C -0.12 -2.03 5.65 30.59 0.17 -1.86 16 6 C -0.12 -2.25 4.94 30.59 0.15 -2.10 16 7 C -0.07 -1.22 1.56 -10.80 -0.02 -1.24 16 8 H 0.06 1.35 6.24 -2.38 -0.01 1.33 16 9 C -0.13 -2.30 5.17 29.85 0.15 -2.15 16 10 C 0.51 12.60 7.55 87.66 0.66 13.27 16 11 O -0.58 -18.67 13.97 -3.04 -0.04 -18.72 16 12 N -0.72 -17.41 5.33 -463.05 -2.47 -19.88 16 13 C 0.14 3.78 5.07 86.38 0.44 4.22 16 14 C -0.10 -3.05 2.37 -10.71 -0.03 -3.08 16 15 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 16 C -0.10 -3.01 5.17 30.62 0.16 -2.85 16 17 C -0.13 -4.71 6.08 30.67 0.19 -4.53 16 18 C 0.17 8.29 5.30 86.36 0.46 8.75 16 19 N -0.61 -29.86 2.99 -699.10 -2.09 -31.96 16 20 C -0.26 -13.93 9.58 84.03 0.81 -13.12 16 21 H 0.07 3.62 7.88 -2.91 -0.02 3.60 16 22 C -0.05 -2.97 4.92 84.86 0.42 -2.55 16 23 N -0.94 -55.43 11.19 21.65 0.24 -55.19 16 24 Si 0.97 44.03 29.59 68.60 2.03 46.06 16 25 H -0.29 -12.80 7.11 99.48 0.71 -12.10 16 26 H -0.30 -13.64 7.11 99.48 0.71 -12.94 16 27 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 28 C 0.15 6.04 5.60 86.36 0.48 6.52 16 29 C -0.11 -1.43 4.73 30.59 0.14 -1.28 16 30 H 0.05 0.88 4.81 -2.39 -0.01 0.87 16 31 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 32 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.05 1.03 6.43 -2.38 -0.02 1.01 16 36 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.05 1.36 5.96 -2.38 -0.01 1.34 16 39 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.41 8.56 7.71 -92.71 -0.71 7.84 16 42 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 45 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 46 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 47 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 48 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 49 H 0.05 2.82 6.06 -2.38 -0.01 2.81 16 50 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 51 H 0.06 2.15 7.14 -2.39 -0.02 2.14 16 52 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 53 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 54 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 Total: -1.00 -66.35 398.62 2.74 -63.61 By element: Atomic # 1 Polarization: 22.07 SS G_CDS: 0.14 Total: 22.21 kcal Atomic # 6 Polarization: -11.08 SS G_CDS: 4.93 Total: -6.14 kcal Atomic # 7 Polarization: -102.71 SS G_CDS: -4.32 Total: -107.02 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: -0.04 Total: -18.72 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -66.35 2.74 -63.61 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359723591.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.128 kcal (2) G-P(sol) polarization free energy of solvation -66.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds