Wall clock time and date at job start Tue Mar 31 2020 15:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.45991 * 2 1 4 4 C 1.53037 * 109.46523 * 240.03315 * 2 1 3 5 5 C 1.53113 * 109.28013 * 180.79832 * 4 2 1 6 6 C 1.53125 * 109.15977 * 57.65520 * 5 4 2 7 7 C 1.53036 * 109.27814 * 302.34375 * 6 5 4 8 8 N 1.46841 * 109.46460 * 119.97504 * 2 1 3 9 9 C 1.46898 * 111.00425 * 305.85905 * 8 2 1 10 10 C 1.53000 * 109.47101 * 87.69569 * 9 8 2 11 11 H 1.08995 * 109.49618 * 303.81493 * 10 9 8 12 12 C 1.53035 * 109.49502 * 183.74893 * 10 9 8 13 13 C 1.53046 * 109.53470 * 178.68348 * 12 10 9 14 14 C 1.53194 * 109.31136 * 61.37000 * 13 12 10 15 15 N 1.46928 * 108.77332 * 305.36267 * 14 13 12 16 16 C 1.34773 * 120.62881 * 233.58955 * 15 14 13 17 17 O 1.21287 * 120.00286 * 179.97438 * 16 15 14 18 18 C 1.50700 * 120.00223 * 359.72223 * 16 15 14 19 19 C 1.52998 * 109.47443 * 180.27598 * 18 16 15 20 20 C 1.50700 * 109.47443 * 179.97438 * 19 18 16 21 21 H 1.08003 * 119.99758 * 0.02562 * 20 19 18 22 22 C 1.37882 * 120.00119 * 180.02562 * 20 19 18 23 23 N 1.31510 * 119.99706 * 359.97438 * 22 20 19 24 24 Si 1.86791 * 119.99798 * 180.02562 * 22 20 19 25 25 H 1.48507 * 109.47431 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.47388 * 120.00229 * 24 22 20 27 27 H 1.48498 * 109.47173 * 240.00134 * 24 22 20 28 28 C 1.46918 * 118.73943 * 53.85965 * 15 14 13 29 29 H 1.09002 * 109.47204 * 307.69419 * 1 2 3 30 30 H 1.08998 * 109.47460 * 67.70114 * 1 2 3 31 31 H 1.09008 * 109.46782 * 187.69583 * 1 2 3 32 32 H 1.09001 * 109.50224 * 300.74176 * 4 2 1 33 33 H 1.09003 * 109.50368 * 60.85722 * 4 2 1 34 34 H 1.09002 * 109.52361 * 177.55451 * 5 4 2 35 35 H 1.08992 * 109.52668 * 297.68670 * 5 4 2 36 36 H 1.09002 * 109.50031 * 62.28660 * 6 5 4 37 37 H 1.08995 * 109.50252 * 182.36256 * 6 5 4 38 38 H 1.08995 * 109.46228 * 299.16438 * 7 6 5 39 39 H 1.08999 * 109.46283 * 179.19282 * 7 6 5 40 40 H 1.08999 * 109.46908 * 327.69958 * 9 8 2 41 41 H 1.08997 * 109.47309 * 207.69931 * 9 8 2 42 42 H 1.09006 * 109.46276 * 58.66695 * 12 10 9 43 43 H 1.09004 * 109.46603 * 298.70425 * 12 10 9 44 44 H 1.08994 * 109.49897 * 301.40950 * 13 12 10 45 45 H 1.09006 * 109.52379 * 181.33010 * 13 12 10 46 46 H 1.09004 * 109.58560 * 185.57538 * 14 13 12 47 47 H 1.08994 * 109.58974 * 65.14860 * 14 13 12 48 48 H 1.09000 * 109.47263 * 300.28158 * 18 16 15 49 49 H 1.09007 * 109.47010 * 60.27593 * 18 16 15 50 50 H 1.09008 * 109.47099 * 300.00307 * 19 18 16 51 51 H 1.08999 * 109.47067 * 59.99661 * 19 18 16 52 52 H 0.97008 * 119.99736 * 179.97438 * 23 22 20 53 53 H 1.08999 * 109.58627 * 65.92718 * 28 15 14 54 54 H 1.08999 * 109.59120 * 186.35417 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0400 -0.7207 -1.2500 5 6 3.5709 -0.7357 -1.2357 6 6 4.0549 -1.4186 0.0466 7 6 3.4866 -0.6776 1.2590 8 7 2.0193 -0.6917 1.1993 9 6 1.4373 -0.1107 2.4165 10 6 0.1044 -0.7968 2.7222 11 1 -0.5564 -0.7085 1.8599 12 6 -0.5472 -0.1294 3.9355 13 6 -1.8959 -0.7935 4.2220 14 6 -1.6729 -2.2740 4.5463 15 7 -0.9182 -2.8905 3.4467 16 6 -1.3804 -3.9977 2.8328 17 8 -0.7484 -4.4969 1.9259 18 6 -2.6798 -4.6187 3.2767 19 6 -2.9693 -5.8580 2.4274 20 6 -4.2683 -6.4794 2.8718 21 1 -4.8313 -6.0346 3.6790 22 6 -4.7380 -7.6157 2.2479 23 7 -4.0525 -8.1569 1.2646 24 14 -6.3484 -8.3854 2.7982 25 1 -6.9212 -7.5905 3.9143 26 1 -7.3032 -8.4024 1.6610 27 1 -6.1011 -9.7757 3.2576 28 6 0.3528 -2.2806 3.0332 29 1 -0.3634 0.6284 0.8132 30 1 -0.3634 0.3899 -0.9508 31 1 -0.3633 -1.0185 0.1376 32 1 1.6660 -1.7446 -1.2577 33 1 1.6895 -0.1980 -2.1400 34 1 3.9380 -1.2860 -2.1021 35 1 3.9456 0.2873 -1.2684 36 1 3.7126 -2.4534 0.0592 37 1 5.1440 -1.3950 0.0826 38 1 3.8403 0.3533 1.2532 39 1 3.8176 -1.1699 2.1734 40 1 1.2708 0.9559 2.2662 41 1 2.1215 -0.2574 3.2522 42 1 -0.7006 0.9298 3.7286 43 1 0.1033 -0.2391 4.8033 44 1 -2.5381 -0.7057 3.3457 45 1 -2.3706 -0.3025 5.0716 46 1 -2.6358 -2.7736 4.6539 47 1 -1.1068 -2.3638 5.4734 48 1 -2.6055 -4.9062 4.3255 49 1 -3.4878 -3.8974 3.1542 50 1 -3.0436 -5.5704 1.3786 51 1 -2.1612 -6.5792 2.5499 52 1 -4.3828 -8.9566 0.8259 53 1 1.0808 -2.3708 3.8394 54 1 0.7271 -2.7844 2.1420 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360197070.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:25:47 Heat of formation + Delta-G solvation = -76.153445 kcal Electronic energy + Delta-G solvation = -28954.625916 eV Core-core repulsion = 25310.188162 eV Total energy + Delta-G solvation = -3644.437755 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.30195 -40.30877 -38.39203 -35.62380 -35.40367 -33.54433 -33.36898 -32.93183 -31.77926 -28.36453 -28.15172 -26.70398 -26.04780 -24.13676 -23.37720 -23.08566 -22.11882 -21.12601 -20.51245 -19.71608 -18.79011 -17.61192 -17.06819 -16.64098 -16.58556 -16.43558 -16.20878 -15.76621 -15.30259 -15.09584 -15.07010 -14.71510 -14.55804 -14.43085 -14.18533 -14.07633 -13.78300 -13.57270 -13.40168 -13.16027 -13.07181 -12.96783 -12.84148 -12.81369 -12.59724 -12.39484 -11.96603 -11.95043 -11.89165 -11.82763 -11.61643 -11.52116 -11.48505 -11.32712 -11.27902 -11.23156 -10.86965 -10.58077 -10.58029 -9.52241 -9.12943 -8.17754 -6.32225 1.41752 1.43752 1.57054 1.74327 2.15217 2.43709 2.90303 3.14952 3.75820 3.81023 3.83844 3.87386 3.96807 4.01671 4.14271 4.17224 4.19957 4.36551 4.39592 4.43210 4.45377 4.50514 4.53411 4.58936 4.62528 4.67869 4.71189 4.72185 4.79632 4.83034 4.87623 4.96670 4.98113 5.02150 5.04378 5.05218 5.08218 5.16584 5.20871 5.22760 5.28428 5.33201 5.36172 5.48418 5.49679 5.57083 5.61942 5.75051 5.85346 6.17517 6.26282 6.28489 6.50501 6.86324 7.33905 7.38359 8.95329 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.015316 B = 0.002905 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.661236 B = 9634.934876 C =10707.770893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.090 3.910 3 H 0.050 0.950 4 C -0.116 4.116 5 C -0.116 4.116 6 C -0.119 4.119 7 C 0.060 3.940 8 N -0.555 5.555 9 C 0.070 3.930 10 C -0.105 4.105 11 H 0.077 0.923 12 C -0.108 4.108 13 C -0.129 4.129 14 C 0.097 3.903 15 N -0.613 5.613 16 C 0.506 3.494 17 O -0.592 6.592 18 C -0.114 4.114 19 C 0.045 3.955 20 C -0.541 4.541 21 H 0.076 0.924 22 C -0.009 4.009 23 N -0.938 5.938 24 Si 0.976 3.024 25 H -0.251 1.251 26 H -0.280 1.280 27 H -0.280 1.280 28 C 0.128 3.872 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.038 0.962 32 H 0.043 0.957 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.047 0.953 37 H 0.081 0.919 38 H 0.043 0.957 39 H 0.075 0.925 40 H 0.056 0.944 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.076 0.924 44 H 0.054 0.946 45 H 0.102 0.898 46 H 0.089 0.911 47 H 0.086 0.914 48 H 0.100 0.900 49 H 0.099 0.901 50 H -0.021 1.021 51 H -0.021 1.021 52 H 0.263 0.737 53 H 0.065 0.935 54 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.143 25.555 5.287 29.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.018 4.018 3 H 0.068 0.932 4 C -0.154 4.154 5 C -0.154 4.154 6 C -0.157 4.157 7 C -0.067 4.067 8 N -0.281 5.281 9 C -0.058 4.058 10 C -0.124 4.124 11 H 0.095 0.905 12 C -0.146 4.146 13 C -0.167 4.167 14 C -0.025 4.025 15 N -0.346 5.346 16 C 0.296 3.704 17 O -0.472 6.472 18 C -0.154 4.154 19 C 0.007 3.993 20 C -0.579 4.579 21 H 0.095 0.905 22 C -0.206 4.206 23 N -0.578 5.578 24 Si 0.799 3.201 25 H -0.175 1.175 26 H -0.206 1.206 27 H -0.206 1.206 28 C 0.006 3.994 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.066 0.934 37 H 0.099 0.901 38 H 0.061 0.939 39 H 0.094 0.906 40 H 0.075 0.925 41 H 0.098 0.902 42 H 0.099 0.901 43 H 0.094 0.906 44 H 0.072 0.928 45 H 0.121 0.879 46 H 0.107 0.893 47 H 0.104 0.896 48 H 0.118 0.882 49 H 0.118 0.882 50 H -0.003 1.003 51 H -0.002 1.002 52 H 0.071 0.929 53 H 0.083 0.917 54 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 13.339 24.689 4.680 28.449 hybrid contribution -0.329 -0.427 -0.400 0.671 sum 13.011 24.262 4.279 27.861 Atomic orbital electron populations 1.22092 0.94976 1.01097 1.02194 1.21587 0.94835 0.95231 0.90163 0.93177 1.21663 0.96382 1.00280 0.97093 1.21546 0.94883 1.01114 0.97838 1.21599 1.00444 0.99248 0.94412 1.22097 0.86522 0.99116 0.98966 1.61831 1.07633 1.56209 1.02381 1.22049 0.95298 0.96561 0.91919 1.21990 0.97552 0.93232 0.99651 0.90454 1.21536 0.96059 0.99740 0.97260 1.21893 0.97957 0.93976 1.02849 1.22056 0.97167 0.94532 0.88756 1.48314 1.23565 1.26712 1.36019 1.21379 0.87616 0.80156 0.81229 1.90639 1.60832 1.63470 1.32291 1.21612 0.93496 0.98436 1.01832 1.18671 0.95149 0.91869 0.93596 1.21729 1.06755 1.10892 1.18512 0.90548 1.26175 1.01751 0.97765 0.94890 1.70201 1.40889 1.21888 1.24855 0.85244 0.78123 0.78122 0.78570 1.17454 1.20586 1.20588 1.21542 0.84250 0.93800 0.99795 0.91203 0.91673 0.94340 0.93838 0.90729 0.91697 0.91031 0.93423 0.90066 0.93896 0.90633 0.92544 0.90200 0.90128 0.90559 0.92763 0.87925 0.89260 0.89608 0.88154 0.88246 1.00284 1.00237 0.92872 0.91661 0.92128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.03 7.49 71.98 0.54 -2.49 16 2 C 0.09 1.73 2.25 44.94 0.10 1.83 16 3 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 4 C -0.12 -2.35 5.37 30.64 0.16 -2.19 16 5 C -0.12 -1.96 6.00 30.67 0.18 -1.77 16 6 C -0.12 -2.13 6.09 30.65 0.19 -1.94 16 7 C 0.06 1.03 5.35 86.32 0.46 1.49 16 8 N -0.56 -11.24 3.95 -871.12 -3.44 -14.67 16 9 C 0.07 1.15 4.07 86.30 0.35 1.51 16 10 C -0.10 -2.11 1.98 -10.57 -0.02 -2.13 16 11 H 0.08 1.87 4.11 -2.39 -0.01 1.86 16 12 C -0.11 -1.53 5.16 30.62 0.16 -1.37 16 13 C -0.13 -2.05 6.08 30.67 0.19 -1.87 16 14 C 0.10 2.05 6.34 86.36 0.55 2.60 16 15 N -0.61 -19.06 2.97 -818.08 -2.43 -21.49 16 16 C 0.51 21.71 7.70 87.66 0.67 22.39 16 17 O -0.59 -31.81 15.39 -3.05 -0.05 -31.85 16 18 C -0.11 -4.93 3.99 29.85 0.12 -4.81 16 19 C 0.04 2.62 4.26 29.85 0.13 2.74 16 20 C -0.54 -31.68 9.11 25.60 0.23 -31.45 16 21 H 0.08 4.06 7.74 -2.91 -0.02 4.04 16 22 C -0.01 -0.51 5.46 84.66 0.46 -0.05 16 23 N -0.94 -61.01 13.29 21.45 0.28 -60.72 16 24 Si 0.98 45.12 29.54 68.60 2.03 47.14 16 25 H -0.25 -10.65 7.11 99.48 0.71 -9.94 16 26 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 27 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 28 C 0.13 3.59 5.55 86.51 0.48 4.07 16 29 H 0.07 1.25 6.04 -2.39 -0.01 1.24 16 30 H 0.06 1.21 8.13 -2.39 -0.02 1.19 16 31 H 0.04 1.07 7.15 -2.38 -0.02 1.06 16 32 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.08 1.24 7.90 -2.39 -0.02 1.22 16 40 H 0.06 0.78 7.51 -2.39 -0.02 0.76 16 41 H 0.08 1.15 7.60 -2.39 -0.02 1.13 16 42 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 43 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 44 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.10 1.10 8.14 -2.38 -0.02 1.08 16 46 H 0.09 1.93 5.94 -2.39 -0.01 1.92 16 47 H 0.09 1.48 8.14 -2.39 -0.02 1.47 16 48 H 0.10 3.84 7.94 -2.39 -0.02 3.82 16 49 H 0.10 3.81 7.69 -2.38 -0.02 3.80 16 50 H -0.02 -1.41 8.10 -2.38 -0.02 -1.43 16 51 H -0.02 -1.38 8.10 -2.39 -0.02 -1.40 16 52 H 0.26 15.90 8.31 -92.70 -0.77 15.13 16 53 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 54 H 0.06 2.23 6.76 -2.39 -0.02 2.21 16 Total: -1.00 -79.59 401.72 2.19 -77.40 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: 0.83 Total: 17.63 kcal Atomic # 6 Polarization: -18.39 SS G_CDS: 4.96 Total: -13.43 kcal Atomic # 7 Polarization: -91.30 SS G_CDS: -5.58 Total: -96.88 kcal Atomic # 8 Polarization: -31.81 SS G_CDS: -0.05 Total: -31.85 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Total: -79.59 2.19 -77.40 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360197070.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.246 kcal (2) G-P(sol) polarization free energy of solvation -79.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds