Wall clock time and date at job start Tue Mar 31 2020 15:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.45474 * 2 1 4 4 C 1.53036 * 109.45891 * 119.96996 * 2 1 3 5 5 C 1.53124 * 109.27476 * 179.19745 * 4 2 1 6 6 C 1.53113 * 109.15996 * 302.34626 * 5 4 2 7 7 C 1.53037 * 109.27858 * 57.65632 * 6 5 4 8 8 N 1.46840 * 109.46509 * 240.02655 * 2 1 3 9 9 C 1.46899 * 111.00016 * 54.14376 * 8 2 1 10 10 C 1.53007 * 109.47119 * 194.08566 * 9 8 2 11 11 H 1.09003 * 109.49477 * 305.06783 * 10 9 8 12 12 C 1.53040 * 109.49944 * 184.99990 * 10 9 8 13 13 C 1.53035 * 109.54005 * 178.65379 * 12 10 9 14 14 C 1.53187 * 109.31281 * 61.36423 * 13 12 10 15 15 N 1.46926 * 108.77543 * 305.36738 * 14 13 12 16 16 C 1.34776 * 120.62978 * 233.58468 * 15 14 13 17 17 O 1.21285 * 120.00452 * 180.02562 * 16 15 14 18 18 C 1.50702 * 120.00297 * 359.97438 * 16 15 14 19 19 C 1.52998 * 109.47646 * 179.97438 * 18 16 15 20 20 C 1.50697 * 109.47213 * 179.97438 * 19 18 16 21 21 H 1.07998 * 119.99918 * 0.02562 * 20 19 18 22 22 C 1.37881 * 119.99689 * 179.97438 * 20 19 18 23 23 N 1.31509 * 120.00287 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99761 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47285 * 60.00381 * 24 22 20 26 26 H 1.48501 * 109.46912 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47137 * 300.00720 * 24 22 20 28 28 C 1.46920 * 118.74096 * 53.86075 * 15 14 13 29 29 H 1.09005 * 109.47082 * 171.71519 * 1 2 3 30 30 H 1.08996 * 109.47587 * 291.72009 * 1 2 3 31 31 H 1.09002 * 109.46896 * 51.72253 * 1 2 3 32 32 H 1.08996 * 109.50255 * 59.26301 * 4 2 1 33 33 H 1.08994 * 109.53654 * 299.15562 * 4 2 1 34 34 H 1.09004 * 109.51986 * 182.44178 * 5 4 2 35 35 H 1.08997 * 109.57274 * 62.28705 * 5 4 2 36 36 H 1.08998 * 109.50592 * 297.71383 * 6 5 4 37 37 H 1.09004 * 109.53323 * 177.61502 * 6 5 4 38 38 H 1.08999 * 109.45956 * 180.80182 * 7 6 5 39 39 H 1.08997 * 109.45186 * 60.83328 * 7 6 5 40 40 H 1.09006 * 109.46904 * 74.09206 * 9 8 2 41 41 H 1.08990 * 109.47421 * 314.08677 * 9 8 2 42 42 H 1.08999 * 109.45733 * 58.63261 * 12 10 9 43 43 H 1.09002 * 109.44752 * 298.66869 * 12 10 9 44 44 H 1.08998 * 109.49472 * 301.41608 * 13 12 10 45 45 H 1.09001 * 109.52779 * 181.33725 * 13 12 10 46 46 H 1.08999 * 109.58801 * 185.58120 * 14 13 12 47 47 H 1.08999 * 109.70430 * 65.22500 * 14 13 12 48 48 H 1.09004 * 109.46990 * 59.99664 * 18 16 15 49 49 H 1.09002 * 109.47062 * 300.00442 * 18 16 15 50 50 H 1.09003 * 109.46836 * 60.00287 * 19 18 16 51 51 H 1.09002 * 109.47315 * 300.00366 * 19 18 16 52 52 H 0.97001 * 120.00183 * 179.97438 * 23 22 20 53 53 H 1.08996 * 109.58675 * 65.92385 * 28 15 14 54 54 H 1.09000 * 109.58870 * 186.35170 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0398 -0.7208 1.2500 5 6 3.5709 -0.7359 1.2357 6 6 4.0547 -1.4187 -0.0466 7 6 3.4864 -0.6776 -1.2589 8 7 2.0193 -0.6917 -1.1993 9 6 1.4373 -0.1105 -2.4165 10 6 1.6792 -1.0527 -3.5975 11 1 2.7453 -1.2634 -3.6824 12 6 1.1845 -0.3931 -4.8869 13 6 1.4565 -1.3207 -6.0733 14 6 0.6905 -2.6327 -5.8767 15 7 1.0529 -3.2008 -4.5711 16 6 1.5022 -4.4677 -4.4743 17 8 1.7977 -4.9254 -3.3907 18 6 1.6364 -5.3163 -5.7125 19 6 2.1635 -6.7001 -5.3278 20 6 2.2971 -7.5488 -6.5659 21 1 2.0328 -7.1417 -7.5307 22 6 2.7576 -8.8447 -6.4670 23 7 3.0799 -9.3402 -5.2923 24 14 2.9238 -9.8964 -8.0018 25 1 3.8716 -9.2499 -8.9448 26 1 3.4354 -11.2396 -7.6284 27 1 1.5962 -10.0360 -8.6525 28 6 0.9104 -2.3635 -3.3722 29 1 -0.3633 -1.0170 -0.1481 30 1 -0.3634 0.3803 0.9546 31 1 -0.3633 0.6366 -0.8068 32 1 1.6659 -1.7446 1.2576 33 1 1.6894 -0.1987 2.1403 34 1 3.9378 -1.2862 2.1021 35 1 3.9465 0.2868 1.2679 36 1 3.7125 -2.4534 -0.0593 37 1 5.1439 -1.3951 -0.0833 38 1 3.8175 -1.1698 -2.1734 39 1 3.8404 0.3533 -1.2529 40 1 1.9053 0.8530 -2.6187 41 1 0.3655 0.0284 -2.2762 42 1 1.7089 0.5507 -5.0361 43 1 0.1135 -0.2055 -4.8107 44 1 2.5246 -1.5288 -6.1349 45 1 1.1257 -0.8407 -6.9943 46 1 0.9578 -3.3339 -6.6672 47 1 -0.3819 -2.4401 -5.9064 48 1 2.3326 -4.8421 -6.4043 49 1 0.6621 -5.4182 -6.1905 50 1 1.4676 -7.1746 -4.6359 51 1 3.1379 -6.5979 -4.8501 52 1 3.4035 -10.2519 -5.2227 53 1 -0.1441 -2.1470 -3.2009 54 1 1.3228 -2.8871 -2.5097 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360197071.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:25:51 Heat of formation + Delta-G solvation = -81.907337 kcal Electronic energy + Delta-G solvation = -28753.051334 eV Core-core repulsion = 25108.364072 eV Total energy + Delta-G solvation = -3644.687262 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.28117 -40.28929 -38.43405 -35.62426 -35.36464 -33.80408 -33.24502 -32.94597 -31.70141 -28.36206 -27.96294 -26.76043 -26.06521 -24.55007 -23.37647 -22.92238 -22.07158 -20.97142 -20.53758 -19.73858 -18.79509 -17.61980 -17.05789 -16.79340 -16.60485 -16.42733 -16.24248 -15.64868 -15.37101 -15.24352 -14.97717 -14.82460 -14.65011 -14.46482 -14.18592 -14.06383 -13.80049 -13.56153 -13.33228 -13.20466 -12.99954 -12.85370 -12.77617 -12.76104 -12.71269 -12.46419 -12.01598 -11.95478 -11.91508 -11.80078 -11.74361 -11.62117 -11.50598 -11.38865 -11.31850 -11.09312 -11.01686 -10.59474 -10.56342 -9.54791 -9.15846 -8.17620 -6.32423 1.41472 1.46672 1.54376 1.72717 2.13175 2.43669 2.88987 3.14805 3.72180 3.75843 3.82480 3.88509 3.93836 3.99728 4.11315 4.14341 4.17060 4.32322 4.38349 4.43911 4.44861 4.48487 4.51007 4.54454 4.64171 4.65439 4.69286 4.72295 4.80390 4.84360 4.93325 4.94302 4.95979 5.00517 5.03108 5.05150 5.07719 5.17965 5.20069 5.22379 5.26304 5.29589 5.36317 5.47580 5.49433 5.50667 5.61512 5.72359 5.84799 6.17183 6.20961 6.28340 6.48485 6.85745 7.32301 7.38039 8.95058 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.015648 B = 0.002812 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.881786 B = 9955.049853 C =11072.895534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.083 3.917 3 H 0.045 0.955 4 C -0.112 4.112 5 C -0.116 4.116 6 C -0.121 4.121 7 C 0.061 3.939 8 N -0.550 5.550 9 C 0.064 3.936 10 C -0.088 4.088 11 H 0.052 0.948 12 C -0.107 4.107 13 C -0.129 4.129 14 C 0.096 3.904 15 N -0.614 5.614 16 C 0.506 3.494 17 O -0.592 6.592 18 C -0.114 4.114 19 C 0.045 3.955 20 C -0.544 4.544 21 H 0.077 0.923 22 C -0.008 4.008 23 N -0.938 5.938 24 Si 0.976 3.024 25 H -0.261 1.261 26 H -0.287 1.287 27 H -0.261 1.261 28 C 0.128 3.872 29 H 0.050 0.950 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.051 0.949 33 H 0.082 0.918 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.044 0.956 37 H 0.071 0.929 38 H 0.058 0.942 39 H 0.041 0.959 40 H 0.047 0.953 41 H 0.093 0.907 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.052 0.948 45 H 0.104 0.896 46 H 0.089 0.911 47 H 0.088 0.912 48 H 0.099 0.901 49 H 0.101 0.899 50 H -0.021 1.021 51 H -0.022 1.022 52 H 0.263 0.737 53 H 0.071 0.929 54 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.445 28.481 5.045 29.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.024 4.024 3 H 0.063 0.937 4 C -0.150 4.150 5 C -0.153 4.153 6 C -0.159 4.159 7 C -0.067 4.067 8 N -0.276 5.276 9 C -0.064 4.064 10 C -0.108 4.108 11 H 0.070 0.930 12 C -0.145 4.145 13 C -0.167 4.167 14 C -0.025 4.025 15 N -0.347 5.347 16 C 0.296 3.704 17 O -0.472 6.472 18 C -0.154 4.154 19 C 0.008 3.992 20 C -0.582 4.582 21 H 0.095 0.905 22 C -0.205 4.205 23 N -0.578 5.578 24 Si 0.799 3.201 25 H -0.186 1.186 26 H -0.213 1.213 27 H -0.186 1.186 28 C 0.006 3.994 29 H 0.069 0.931 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.070 0.930 33 H 0.100 0.900 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.062 0.938 37 H 0.089 0.911 38 H 0.076 0.924 39 H 0.059 0.941 40 H 0.065 0.935 41 H 0.112 0.888 42 H 0.098 0.902 43 H 0.099 0.901 44 H 0.071 0.929 45 H 0.122 0.878 46 H 0.108 0.892 47 H 0.106 0.894 48 H 0.117 0.883 49 H 0.119 0.881 50 H -0.002 1.002 51 H -0.003 1.003 52 H 0.072 0.928 53 H 0.089 0.911 54 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.392 27.623 5.731 28.721 hybrid contribution 0.776 -0.533 -0.190 0.960 sum -4.616 27.090 5.542 28.033 Atomic orbital electron populations 1.21914 0.93596 1.02081 1.02678 1.21625 0.95892 0.95153 0.89766 0.93710 1.21647 0.95463 1.00744 0.97166 1.21547 0.95897 1.00821 0.97079 1.21582 1.00069 0.99223 0.94977 1.22005 0.87632 0.98672 0.98412 1.61875 1.07011 1.56066 1.02635 1.22179 1.01130 0.94923 0.88171 1.21545 0.99252 0.94232 0.95796 0.92973 1.21530 1.02421 0.98310 0.92222 1.21894 1.00147 0.94766 0.99891 1.22064 1.00598 0.96367 0.83490 1.48329 1.64956 1.11625 1.09822 1.21393 0.75352 0.82449 0.91174 1.90639 1.51680 1.73242 1.31650 1.21615 1.03551 0.95465 0.94743 1.18662 0.93933 0.91264 0.95382 1.21674 1.44027 0.98103 0.94359 0.90530 1.26176 0.94811 0.99796 0.99735 1.70183 1.45304 1.16214 1.26128 0.85349 0.79228 0.77011 0.78503 1.18590 1.21309 1.18559 1.21549 0.99843 0.90828 0.87171 0.93114 0.90867 0.91522 0.93007 0.89962 0.91548 0.91221 0.93753 0.91075 0.92370 0.94083 0.93453 0.88846 0.90176 0.90076 0.92921 0.87751 0.89222 0.89382 0.88252 0.88068 1.00219 1.00312 0.92846 0.91093 0.92117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 8.53 71.98 0.61 -1.47 16 2 C 0.08 1.40 2.44 44.94 0.11 1.51 16 3 H 0.04 0.69 8.14 -2.38 -0.02 0.67 16 4 C -0.11 -1.96 5.37 30.65 0.16 -1.79 16 5 C -0.12 -2.02 6.00 30.67 0.18 -1.83 16 6 C -0.12 -2.64 6.09 30.64 0.19 -2.45 16 7 C 0.06 1.30 5.31 86.33 0.46 1.76 16 8 N -0.55 -11.39 4.04 -871.14 -3.52 -14.91 16 9 C 0.06 1.08 4.14 86.31 0.36 1.44 16 10 C -0.09 -1.81 2.34 -10.57 -0.02 -1.84 16 11 H 0.05 1.32 6.39 -2.39 -0.02 1.31 16 12 C -0.11 -1.52 5.16 30.62 0.16 -1.36 16 13 C -0.13 -2.06 6.08 30.67 0.19 -1.87 16 14 C 0.10 2.03 6.34 86.36 0.55 2.58 16 15 N -0.61 -19.03 2.97 -818.09 -2.43 -21.46 16 16 C 0.51 21.67 7.70 87.66 0.67 22.34 16 17 O -0.59 -31.74 15.39 -3.05 -0.05 -31.79 16 18 C -0.11 -4.91 3.99 29.85 0.12 -4.80 16 19 C 0.05 2.64 4.26 29.85 0.13 2.77 16 20 C -0.54 -31.83 9.11 25.60 0.23 -31.60 16 21 H 0.08 4.05 7.74 -2.91 -0.02 4.03 16 22 C -0.01 -0.46 5.46 84.66 0.46 0.00 16 23 N -0.94 -61.03 13.29 21.45 0.28 -60.75 16 24 Si 0.98 45.03 29.54 68.60 2.03 47.06 16 25 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 26 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 27 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 28 C 0.13 3.58 5.57 86.51 0.48 4.06 16 29 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 30 H 0.07 0.84 8.13 -2.39 -0.02 0.83 16 31 H 0.07 0.79 6.53 -2.39 -0.02 0.78 16 32 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 35 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 38 H 0.06 1.45 6.32 -2.39 -0.02 1.44 16 39 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.05 0.69 8.08 -2.38 -0.02 0.67 16 41 H 0.09 1.37 5.65 -2.39 -0.01 1.35 16 42 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 46 H 0.09 1.92 5.93 -2.39 -0.01 1.90 16 47 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 48 H 0.10 3.81 7.69 -2.39 -0.02 3.79 16 49 H 0.10 3.85 7.94 -2.39 -0.02 3.83 16 50 H -0.02 -1.36 8.10 -2.39 -0.02 -1.38 16 51 H -0.02 -1.43 8.10 -2.39 -0.02 -1.45 16 52 H 0.26 16.00 8.31 -92.71 -0.77 15.23 16 53 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 54 H 0.06 2.23 6.80 -2.39 -0.02 2.21 16 Total: -1.00 -79.48 404.27 2.19 -77.30 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: 0.83 Total: 17.12 kcal Atomic # 6 Polarization: -17.61 SS G_CDS: 5.04 Total: -12.57 kcal Atomic # 7 Polarization: -91.45 SS G_CDS: -5.66 Total: -97.11 kcal Atomic # 8 Polarization: -31.74 SS G_CDS: -0.05 Total: -31.79 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -79.48 2.19 -77.30 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360197071.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.611 kcal (2) G-P(sol) polarization free energy of solvation -79.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds