Wall clock time and date at job start Tue Mar 31 2020 15:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 109.45893 * 2 1 4 4 C 1.53035 * 109.46133 * 240.02904 * 2 1 3 5 5 C 1.53117 * 109.28157 * 180.80261 * 4 2 1 6 6 C 1.53127 * 109.16195 * 57.65200 * 5 4 2 7 7 C 1.53037 * 109.27690 * 302.34744 * 6 5 4 8 8 N 1.46839 * 109.46642 * 119.97411 * 2 1 3 9 9 C 1.46898 * 111.00152 * 305.85394 * 8 2 1 10 10 C 1.52999 * 109.47256 * 325.14076 * 9 8 2 11 11 H 1.09005 * 109.52189 * 48.91220 * 10 9 8 12 12 C 1.53038 * 109.50236 * 168.99923 * 10 9 8 13 13 C 1.53036 * 109.53888 * 181.31630 * 12 10 9 14 14 C 1.53625 * 109.24451 * 298.51139 * 13 12 10 15 15 N 1.46923 * 108.54284 * 54.85465 * 14 13 12 16 16 C 1.34777 * 120.62837 * 126.36810 * 15 14 13 17 17 O 1.21287 * 119.99564 * 179.72109 * 16 15 14 18 18 C 1.50694 * 120.00288 * 359.72646 * 16 15 14 19 19 C 1.52993 * 109.47422 * 180.02562 * 18 16 15 20 20 C 1.50701 * 109.47208 * 179.97438 * 19 18 16 21 21 H 1.07994 * 120.00069 * 359.97438 * 20 19 18 22 22 C 1.37884 * 119.99779 * 179.97438 * 20 19 18 23 23 N 1.31511 * 119.99622 * 179.97438 * 22 20 19 24 24 Si 1.86793 * 120.00112 * 359.97438 * 22 20 19 25 25 H 1.48499 * 109.47427 * 90.00139 * 24 22 20 26 26 H 1.48506 * 109.47092 * 210.00236 * 24 22 20 27 27 H 1.48502 * 109.47184 * 329.99750 * 24 22 20 28 28 C 1.46930 * 118.73957 * 306.09599 * 15 14 13 29 29 H 1.09005 * 109.46832 * 300.02465 * 1 2 3 30 30 H 1.08998 * 109.47472 * 60.02075 * 1 2 3 31 31 H 1.09001 * 109.47145 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.50769 * 60.86096 * 4 2 1 33 33 H 1.09002 * 109.53781 * 300.76405 * 4 2 1 34 34 H 1.09003 * 109.52664 * 297.74980 * 5 4 2 35 35 H 1.09004 * 109.58041 * 177.59011 * 5 4 2 36 36 H 1.08996 * 109.50337 * 182.40422 * 6 5 4 37 37 H 1.09008 * 109.53142 * 62.30696 * 6 5 4 38 38 H 1.08996 * 109.46299 * 299.16617 * 7 6 5 39 39 H 1.08994 * 109.45344 * 179.18208 * 7 6 5 40 40 H 1.09005 * 109.47685 * 205.13793 * 9 8 2 41 41 H 1.08998 * 109.47341 * 85.13968 * 9 8 2 42 42 H 1.09001 * 109.45809 * 301.34237 * 12 10 9 43 43 H 1.08999 * 109.45737 * 61.29335 * 12 10 9 44 44 H 1.08999 * 109.49834 * 58.58511 * 13 12 10 45 45 H 1.09003 * 109.49760 * 178.65043 * 13 12 10 46 46 H 1.09001 * 109.73790 * 295.11987 * 14 13 12 47 47 H 1.08991 * 109.66611 * 174.55438 * 14 13 12 48 48 H 1.09002 * 109.47191 * 59.99018 * 18 16 15 49 49 H 1.09010 * 109.46687 * 299.99792 * 18 16 15 50 50 H 1.09002 * 109.47745 * 59.99350 * 19 18 16 51 51 H 1.09001 * 109.47007 * 299.99317 * 19 18 16 52 52 H 0.97006 * 120.00157 * 179.97438 * 23 22 20 53 53 H 1.09003 * 109.58699 * 173.64329 * 28 15 14 54 54 H 1.08997 * 109.58344 * 293.93121 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0398 -0.7208 -1.2500 5 6 3.5708 -0.7360 -1.2357 6 6 4.0548 -1.4188 0.0466 7 6 3.4866 -0.6776 1.2590 8 7 2.0193 -0.6917 1.1993 9 6 1.4374 -0.1106 2.4165 10 6 1.2629 1.3978 2.2285 11 1 0.7669 1.5913 1.2773 12 6 0.4140 1.9602 3.3709 13 6 0.2115 3.4632 3.1661 14 6 1.5775 4.1659 3.1879 15 7 2.4449 3.5322 2.1856 16 6 3.0578 4.2729 1.2411 17 8 3.7755 3.7385 0.4224 18 6 2.8515 5.7652 1.2024 19 6 3.6526 6.3609 0.0431 20 6 3.4458 7.8532 0.0040 21 1 2.8065 8.3290 0.7329 22 6 4.0727 8.6110 -0.9624 23 7 3.8918 9.9131 -0.9967 24 14 5.1790 7.7881 -2.2226 25 1 4.3736 7.3949 -3.4067 26 1 6.2435 8.7355 -2.6404 27 1 5.7995 6.5797 -1.6226 28 6 2.6364 2.0763 2.2362 29 1 -0.3633 0.5142 0.8898 30 1 -0.3634 0.5135 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.6894 -0.1981 -2.1400 33 1 1.6658 -1.7446 -1.2584 34 1 3.9456 0.2871 -1.2673 35 1 3.9388 -1.2856 -2.1022 36 1 5.1439 -1.3946 0.0829 37 1 3.7130 -2.4538 0.0597 38 1 3.8403 0.3533 1.2530 39 1 3.8175 -1.1700 2.1733 40 1 2.1006 -0.2971 3.2612 41 1 0.4667 -0.5673 2.6090 42 1 -0.5551 1.4614 3.3829 43 1 0.9224 1.7883 4.3196 44 1 -0.2746 3.6373 2.2061 45 1 -0.4131 3.8587 3.9671 46 1 2.0271 4.0660 4.1758 47 1 1.4510 5.2212 2.9468 48 1 3.1898 6.2033 2.1414 49 1 1.7926 5.9820 1.0611 50 1 3.3139 5.9228 -0.8958 51 1 4.7115 6.1442 0.1840 52 1 4.3331 10.4464 -1.6764 53 1 3.2088 1.7525 1.3669 54 1 3.1728 1.8098 3.1469 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360197072.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:25:54 Heat of formation + Delta-G solvation = -64.886399 kcal Electronic energy + Delta-G solvation = -29653.371198 eV Core-core repulsion = 26009.422019 eV Total energy + Delta-G solvation = -3643.949179 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.76570 -40.46237 -38.32203 -35.66844 -35.48294 -33.60167 -33.47496 -33.22094 -31.61301 -28.71874 -28.18783 -26.91129 -26.13256 -24.06642 -23.41993 -23.17964 -22.11293 -21.42267 -20.14767 -19.87346 -19.07565 -17.85952 -17.07046 -16.90746 -16.71994 -16.47963 -16.27264 -15.79404 -15.39379 -15.30239 -15.06025 -14.96017 -14.70254 -14.45531 -14.42754 -14.05878 -13.83035 -13.64753 -13.43904 -13.24507 -13.13847 -12.95747 -12.91962 -12.77662 -12.59084 -12.17579 -12.03081 -11.98927 -11.93823 -11.85671 -11.78072 -11.64890 -11.56604 -11.42583 -11.32534 -11.29644 -11.03911 -10.81701 -10.73864 -9.65464 -9.12406 -8.35076 -6.37842 1.28888 1.30928 1.46056 1.60426 2.00843 2.31298 2.95107 3.00424 3.56562 3.70292 3.78963 3.85896 3.88955 3.95910 4.01789 4.07760 4.16309 4.25860 4.28274 4.33962 4.39216 4.41239 4.43133 4.48840 4.57345 4.66540 4.69641 4.71987 4.74771 4.81921 4.87343 4.89968 4.93235 4.98417 5.00978 5.03161 5.06904 5.10251 5.13066 5.18600 5.23460 5.26507 5.27055 5.32821 5.37595 5.45670 5.51298 5.56444 5.60718 6.17074 6.19446 6.20179 6.36423 6.67752 7.18190 7.27575 8.80593 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.013043 B = 0.003711 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.208395 B = 7544.250036 C = 8900.152296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.077 3.923 3 H 0.020 0.980 4 C -0.109 4.109 5 C -0.126 4.126 6 C -0.111 4.111 7 C 0.041 3.959 8 N -0.525 5.525 9 C 0.064 3.936 10 C -0.142 4.142 11 H 0.080 0.920 12 C -0.105 4.105 13 C -0.130 4.130 14 C 0.096 3.904 15 N -0.611 5.611 16 C 0.510 3.490 17 O -0.588 6.588 18 C -0.112 4.112 19 C 0.008 3.992 20 C -0.529 4.529 21 H 0.052 0.948 22 C 0.018 3.982 23 N -0.941 5.941 24 Si 0.935 3.065 25 H -0.269 1.269 26 H -0.275 1.275 27 H -0.265 1.265 28 C 0.107 3.893 29 H 0.070 0.930 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.059 0.941 33 H 0.079 0.921 34 H 0.033 0.967 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.024 0.976 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.095 0.905 42 H 0.084 0.916 43 H 0.077 0.923 44 H 0.054 0.946 45 H 0.101 0.899 46 H 0.087 0.913 47 H 0.088 0.912 48 H 0.099 0.901 49 H 0.098 0.902 50 H 0.005 0.995 51 H 0.007 0.993 52 H 0.268 0.732 53 H 0.069 0.931 54 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.977 -26.021 10.599 29.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.031 4.031 3 H 0.037 0.963 4 C -0.147 4.147 5 C -0.163 4.163 6 C -0.149 4.149 7 C -0.087 4.087 8 N -0.249 5.249 9 C -0.064 4.064 10 C -0.162 4.162 11 H 0.098 0.902 12 C -0.143 4.143 13 C -0.169 4.169 14 C -0.026 4.026 15 N -0.344 5.344 16 C 0.300 3.700 17 O -0.468 6.468 18 C -0.152 4.152 19 C -0.030 4.030 20 C -0.567 4.567 21 H 0.070 0.930 22 C -0.180 4.180 23 N -0.581 5.581 24 Si 0.760 3.240 25 H -0.194 1.194 26 H -0.200 1.200 27 H -0.190 1.190 28 C -0.015 4.015 29 H 0.089 0.911 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.098 0.902 34 H 0.051 0.949 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.042 0.958 39 H 0.106 0.894 40 H 0.100 0.900 41 H 0.113 0.887 42 H 0.102 0.898 43 H 0.096 0.904 44 H 0.073 0.927 45 H 0.119 0.881 46 H 0.105 0.895 47 H 0.106 0.894 48 H 0.118 0.882 49 H 0.116 0.884 50 H 0.023 0.977 51 H 0.025 0.975 52 H 0.077 0.923 53 H 0.087 0.913 54 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.701 -26.640 10.059 29.775 hybrid contribution 1.104 1.360 -0.930 1.983 sum -7.598 -25.280 9.129 27.931 Atomic orbital electron populations 1.22025 0.93212 1.02945 1.02295 1.21629 0.96158 0.94655 0.90694 0.96255 1.21603 0.95188 1.01436 0.96449 1.21593 0.96261 0.99654 0.98841 1.21542 0.99908 1.00091 0.93369 1.22432 0.87907 0.98775 0.99592 1.62294 1.06731 1.53871 1.02021 1.22319 1.01713 0.90140 0.92220 1.22501 0.95369 0.96864 1.01505 0.90154 1.21498 1.00372 0.94766 0.97629 1.21981 0.95698 0.96150 1.03028 1.22161 0.90672 0.98136 0.91635 1.48264 1.47715 1.07760 1.30629 1.21267 0.78483 0.90469 0.79770 1.90617 1.40393 1.74583 1.41249 1.21483 1.02800 0.89398 1.01498 1.19194 0.95444 0.93973 0.94356 1.21394 1.28888 0.91783 1.14640 0.93007 1.25746 0.97672 0.95186 0.99434 1.70011 1.45452 1.06332 1.36330 0.85883 0.79510 0.78823 0.79825 1.19370 1.20015 1.18985 1.22036 0.98118 0.79264 1.02057 0.91088 0.92720 0.90988 0.92226 0.90231 0.94858 0.90955 0.91404 0.90294 0.95758 0.89425 0.90044 0.88655 0.89754 0.90445 0.92739 0.88105 0.89492 0.89369 0.88240 0.88351 0.97686 0.97468 0.92286 0.91280 0.91099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 8.29 71.98 0.60 -1.96 16 2 C 0.08 1.64 1.73 44.94 0.08 1.71 16 3 H 0.02 0.55 5.43 -2.39 -0.01 0.54 16 4 C -0.11 -2.25 5.37 30.65 0.16 -2.09 16 5 C -0.13 -2.75 6.00 30.68 0.18 -2.57 16 6 C -0.11 -2.11 6.09 30.65 0.19 -1.92 16 7 C 0.04 0.80 5.01 86.32 0.43 1.23 16 8 N -0.53 -9.67 4.70 -871.14 -4.09 -13.76 16 9 C 0.06 0.94 4.46 86.30 0.39 1.33 16 10 C -0.14 -2.50 1.18 -10.72 -0.01 -2.51 16 11 H 0.08 1.73 4.05 -2.38 -0.01 1.72 16 12 C -0.10 -1.32 5.14 30.62 0.16 -1.16 16 13 C -0.13 -1.95 6.10 30.82 0.19 -1.76 16 14 C 0.10 1.90 6.37 86.51 0.55 2.45 16 15 N -0.61 -17.04 2.97 -818.06 -2.43 -19.47 16 16 C 0.51 19.49 7.70 87.66 0.67 20.16 16 17 O -0.59 -27.44 15.40 -3.05 -0.05 -27.48 16 18 C -0.11 -4.47 3.98 29.84 0.12 -4.35 16 19 C 0.01 0.43 3.33 29.85 0.10 0.53 16 20 C -0.53 -31.05 9.66 25.60 0.25 -30.80 16 21 H 0.05 3.18 7.99 -2.91 -0.02 3.15 16 22 C 0.02 1.06 5.47 84.66 0.46 1.53 16 23 N -0.94 -59.25 13.96 21.45 0.30 -58.95 16 24 Si 0.93 47.62 27.47 68.60 1.88 49.51 16 25 H -0.27 -13.25 7.11 99.48 0.71 -12.54 16 26 H -0.27 -13.33 7.11 99.48 0.71 -12.62 16 27 H -0.27 -13.60 6.54 99.48 0.65 -12.94 16 28 C 0.11 2.60 4.56 86.36 0.39 2.99 16 29 H 0.07 1.13 5.16 -2.38 -0.01 1.12 16 30 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 36 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 38 H 0.02 0.61 4.81 -2.39 -0.01 0.60 16 39 H 0.09 1.42 7.90 -2.39 -0.02 1.41 16 40 H 0.08 1.05 7.57 -2.38 -0.02 1.03 16 41 H 0.10 1.15 7.74 -2.39 -0.02 1.13 16 42 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 46 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 47 H 0.09 1.85 5.93 -2.39 -0.01 1.83 16 48 H 0.10 3.63 7.93 -2.39 -0.02 3.61 16 49 H 0.10 3.61 7.70 -2.38 -0.02 3.59 16 50 H 0.00 0.26 7.53 -2.39 -0.02 0.24 16 51 H 0.01 0.38 7.15 -2.39 -0.02 0.36 16 52 H 0.27 15.76 8.31 -92.70 -0.77 14.99 16 53 H 0.07 2.13 3.31 -2.39 -0.01 2.13 16 54 H 0.07 1.52 8.11 -2.39 -0.02 1.50 16 Total: -1.00 -73.36 388.16 1.33 -72.03 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: 0.80 Total: 15.33 kcal Atomic # 6 Polarization: -22.11 SS G_CDS: 4.91 Total: -17.20 kcal Atomic # 7 Polarization: -85.96 SS G_CDS: -6.22 Total: -92.18 kcal Atomic # 8 Polarization: -27.44 SS G_CDS: -0.05 Total: -27.48 kcal Atomic # 14 Polarization: 47.62 SS G_CDS: 1.88 Total: 49.51 kcal Total: -73.36 1.33 -72.03 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360197072.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.144 kcal (2) G-P(sol) polarization free energy of solvation -73.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds