Wall clock time and date at job start Tue Mar 31 2020 15:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.46732 * 2 1 4 4 C 1.53038 * 109.46422 * 119.98437 * 2 1 3 5 5 C 1.53099 * 109.29265 * 179.19181 * 4 2 1 6 6 C 1.53114 * 109.15539 * 302.33789 * 5 4 2 7 7 C 1.53043 * 109.27856 * 57.65129 * 6 5 4 8 8 N 1.46843 * 109.52231 * 300.82162 * 7 6 5 9 9 C 1.46896 * 110.99802 * 185.83956 * 8 7 6 10 10 C 1.52998 * 109.47422 * 323.18571 * 9 8 7 11 11 H 1.09002 * 109.49734 * 54.20103 * 10 9 8 12 12 C 1.53046 * 109.50167 * 174.26130 * 10 9 8 13 13 C 1.53039 * 109.53683 * 181.31853 * 12 10 9 14 14 C 1.53196 * 109.31465 * 298.63568 * 13 12 10 15 15 N 1.46922 * 108.77237 * 54.63821 * 14 13 12 16 16 C 1.34776 * 120.63052 * 126.41483 * 15 14 13 17 17 O 1.21283 * 120.00014 * 180.02562 * 16 15 14 18 18 C 1.50702 * 119.99896 * 359.97438 * 16 15 14 19 19 C 1.53005 * 109.47085 * 180.02562 * 18 16 15 20 20 C 1.50693 * 109.47271 * 179.97438 * 19 18 16 21 21 H 1.08005 * 119.99753 * 359.97438 * 20 19 18 22 22 C 1.37870 * 120.00503 * 179.97438 * 20 19 18 23 23 N 1.31516 * 119.99745 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00444 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47051 * 0.02562 * 24 22 20 26 26 H 1.48507 * 109.46873 * 120.00413 * 24 22 20 27 27 H 1.48493 * 109.47418 * 240.00066 * 24 22 20 28 28 C 1.46929 * 118.74159 * 306.39087 * 15 14 13 29 29 H 1.08997 * 109.47585 * 171.85832 * 1 2 3 30 30 H 1.09006 * 109.46437 * 291.85227 * 1 2 3 31 31 H 1.09000 * 109.47161 * 51.85146 * 1 2 3 32 32 H 1.09003 * 109.49752 * 299.12135 * 4 2 1 33 33 H 1.08995 * 109.50668 * 59.23784 * 4 2 1 34 34 H 1.08997 * 109.52797 * 182.42887 * 5 4 2 35 35 H 1.09000 * 109.57685 * 62.26907 * 5 4 2 36 36 H 1.08999 * 109.50304 * 297.71444 * 6 5 4 37 37 H 1.09002 * 109.50812 * 177.59096 * 6 5 4 38 38 H 1.08998 * 109.45914 * 180.80547 * 7 6 5 39 39 H 1.09000 * 109.45395 * 60.83781 * 7 6 5 40 40 H 1.08999 * 109.47484 * 83.18932 * 9 8 7 41 41 H 1.09000 * 109.47482 * 203.18608 * 9 8 7 42 42 H 1.08991 * 109.46065 * 301.34251 * 12 10 9 43 43 H 1.09001 * 109.45305 * 61.31345 * 12 10 9 44 44 H 1.08993 * 109.49976 * 58.59222 * 13 12 10 45 45 H 1.09000 * 109.49297 * 178.65614 * 13 12 10 46 46 H 1.08991 * 109.58686 * 174.42551 * 14 13 12 47 47 H 1.09000 * 109.58394 * 294.70912 * 14 13 12 48 48 H 1.09001 * 109.46870 * 299.99621 * 18 16 15 49 49 H 1.08990 * 109.47015 * 60.00069 * 18 16 15 50 50 H 1.09006 * 109.46614 * 299.99845 * 19 18 16 51 51 H 1.08996 * 109.47480 * 59.99473 * 19 18 16 52 52 H 0.97002 * 120.00500 * 179.97438 * 23 22 20 53 53 H 1.09001 * 109.58468 * 293.82362 * 28 15 14 54 54 H 1.08999 * 109.59021 * 173.39878 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0399 -0.7211 1.2498 5 6 3.5708 -0.7365 1.2357 6 6 4.0545 -1.4193 -0.0466 7 6 3.4864 -0.6780 -1.2590 8 7 2.0192 -0.6919 -1.1993 9 6 1.4374 -0.1106 -2.4165 10 6 2.3034 1.0596 -2.8872 11 1 3.3347 0.7260 -3.0020 12 6 1.7806 1.5743 -4.2303 13 6 2.6660 2.7234 -4.7178 14 6 2.6094 3.8715 -3.7050 15 7 2.9716 3.3510 -2.3796 16 6 3.9535 3.9291 -1.6598 17 8 4.2435 3.4897 -0.5672 18 6 4.6919 5.1206 -2.2131 19 6 5.7477 5.5794 -1.2052 20 6 6.4865 6.7705 -1.7587 21 1 6.2290 7.1610 -2.7322 22 6 7.4910 7.3618 -1.0224 23 7 7.8048 6.8860 0.1628 24 14 8.4073 8.8379 -1.7088 25 1 7.8683 9.1748 -3.0509 26 1 8.2294 9.9979 -0.7988 27 1 9.8522 8.5147 -1.8221 28 6 2.2428 2.1887 -1.8536 29 1 -0.3634 -1.0172 -0.1455 30 1 -0.3632 0.3825 0.9539 31 1 -0.3633 0.6348 -0.8082 32 1 1.6897 -0.1983 2.1398 33 1 1.6658 -1.7448 1.2575 34 1 3.9376 -1.2868 2.1021 35 1 3.9466 0.2861 1.2678 36 1 3.7120 -2.4540 -0.0594 37 1 5.1437 -1.3954 -0.0830 38 1 3.8174 -1.1703 -2.1734 39 1 3.8405 0.3528 -1.2529 40 1 1.3964 -0.8695 -3.1979 41 1 0.4297 0.2460 -2.2031 42 1 1.7997 0.7659 -4.9612 43 1 0.7575 1.9304 -4.1093 44 1 3.6940 2.3746 -4.8152 45 1 2.3073 3.0736 -5.6857 46 1 3.3133 4.6508 -3.9964 47 1 1.6004 4.2829 -3.6751 48 1 5.1788 4.8441 -3.1483 49 1 3.9873 5.9317 -2.3962 50 1 5.2610 5.8557 -0.2697 51 1 6.4523 4.7681 -1.0223 52 1 8.5118 7.3017 0.6808 53 1 1.2033 2.4613 -1.6709 54 1 2.7049 1.8579 -0.9235 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360197073.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:25:58 Heat of formation + Delta-G solvation = -69.744932 kcal Electronic energy + Delta-G solvation = -29501.636530 eV Core-core repulsion = 25857.476669 eV Total energy + Delta-G solvation = -3644.159861 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.73063 -40.40588 -38.34248 -35.66831 -35.43301 -33.82161 -33.27497 -33.01053 -31.52570 -28.53007 -27.97236 -26.94964 -26.18538 -24.64855 -23.54756 -22.94214 -22.13844 -21.31477 -20.32388 -19.70307 -18.79292 -17.67378 -17.08151 -16.89516 -16.69528 -16.45870 -16.40623 -15.59909 -15.44122 -15.35017 -15.21073 -14.87704 -14.63601 -14.46396 -14.20813 -14.03559 -13.79971 -13.65644 -13.31350 -13.24698 -12.91006 -12.88874 -12.86973 -12.78735 -12.59930 -12.42797 -12.18905 -12.00542 -11.94373 -11.88570 -11.74946 -11.56838 -11.53496 -11.33980 -11.31199 -11.19288 -11.05641 -10.70419 -10.60853 -9.64630 -9.12768 -8.20653 -6.35360 1.40182 1.41941 1.55270 1.63543 2.02095 2.41051 2.95116 3.12283 3.58226 3.69260 3.77850 3.84940 3.91421 3.95580 4.02380 4.07919 4.13551 4.26721 4.29903 4.39683 4.40993 4.41852 4.45731 4.51448 4.57712 4.65217 4.66797 4.72739 4.79060 4.84435 4.85521 4.93224 4.93432 4.97585 5.00674 5.02885 5.04284 5.13784 5.16726 5.19866 5.22111 5.24487 5.33630 5.44010 5.45545 5.48143 5.56943 5.62361 5.81050 6.13811 6.14817 6.21004 6.37989 6.82805 7.22538 7.35266 8.92373 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.014727 B = 0.003262 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.750162 B = 8582.541121 C = 9771.413965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.059 3.941 3 H 0.031 0.969 4 C -0.106 4.106 5 C -0.127 4.127 6 C -0.113 4.113 7 C 0.054 3.946 8 N -0.523 5.523 9 C 0.055 3.945 10 C -0.130 4.130 11 H 0.060 0.940 12 C -0.104 4.104 13 C -0.130 4.130 14 C 0.096 3.904 15 N -0.613 5.613 16 C 0.507 3.493 17 O -0.590 6.590 18 C -0.114 4.114 19 C 0.045 3.955 20 C -0.542 4.542 21 H 0.076 0.924 22 C -0.007 4.007 23 N -0.938 5.938 24 Si 0.975 3.025 25 H -0.251 1.251 26 H -0.280 1.280 27 H -0.280 1.280 28 C 0.106 3.894 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.029 0.971 36 H 0.082 0.918 37 H 0.059 0.941 38 H 0.080 0.920 39 H 0.014 0.986 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.084 0.916 43 H 0.079 0.921 44 H 0.052 0.948 45 H 0.104 0.896 46 H 0.090 0.910 47 H 0.087 0.913 48 H 0.099 0.901 49 H 0.101 0.899 50 H -0.020 1.020 51 H -0.021 1.021 52 H 0.263 0.737 53 H 0.071 0.929 54 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.509 -16.638 -10.168 26.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.049 4.049 3 H 0.049 0.951 4 C -0.143 4.143 5 C -0.164 4.164 6 C -0.151 4.151 7 C -0.074 4.074 8 N -0.247 5.247 9 C -0.073 4.073 10 C -0.151 4.151 11 H 0.079 0.921 12 C -0.142 4.142 13 C -0.169 4.169 14 C -0.026 4.026 15 N -0.346 5.346 16 C 0.297 3.703 17 O -0.471 6.471 18 C -0.154 4.154 19 C 0.008 3.992 20 C -0.580 4.580 21 H 0.094 0.906 22 C -0.204 4.204 23 N -0.578 5.578 24 Si 0.799 3.201 25 H -0.175 1.175 26 H -0.205 1.205 27 H -0.206 1.206 28 C -0.016 4.016 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.099 0.901 34 H 0.091 0.909 35 H 0.048 0.952 36 H 0.100 0.900 37 H 0.078 0.922 38 H 0.098 0.902 39 H 0.032 0.968 40 H 0.112 0.888 41 H 0.112 0.888 42 H 0.103 0.897 43 H 0.098 0.902 44 H 0.071 0.929 45 H 0.122 0.878 46 H 0.108 0.892 47 H 0.106 0.894 48 H 0.117 0.883 49 H 0.119 0.881 50 H -0.002 1.002 51 H -0.003 1.003 52 H 0.072 0.928 53 H 0.089 0.911 54 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -18.421 -17.340 -9.428 26.998 hybrid contribution 1.444 1.703 0.511 2.291 sum -16.977 -15.637 -8.917 24.744 Atomic orbital electron populations 1.21895 0.92678 1.03028 1.02200 1.22009 0.96606 0.95492 0.90822 0.95128 1.21581 0.94516 1.01627 0.96621 1.21590 0.96859 0.99446 0.98545 1.21556 0.99567 1.00261 0.93716 1.22109 0.88265 0.97996 0.99075 1.62307 1.06389 1.53753 1.02212 1.22504 0.98401 0.94306 0.92054 1.22225 1.01086 0.95375 0.96397 0.92125 1.21498 0.99564 0.98253 0.94919 1.21913 1.00495 0.95451 0.98995 1.22074 1.02393 0.97544 0.80574 1.48304 1.35343 1.31398 1.19527 1.21415 0.79468 0.84942 0.84475 1.90633 1.67223 1.65813 1.23387 1.21615 0.98348 0.94725 1.00671 1.18666 0.92558 0.94705 0.93293 1.21714 1.18232 1.13984 1.04081 0.90572 1.26159 0.98234 1.00995 0.95040 1.70193 1.31451 1.42895 1.13256 0.85251 0.77901 0.77923 0.79040 1.17475 1.20544 1.20571 1.22087 0.95994 0.85775 0.97714 0.90874 0.91797 0.91798 0.91646 0.90134 0.90929 0.95225 0.89986 0.92216 0.90155 0.96776 0.88784 0.88823 0.89710 0.90233 0.92948 0.87772 0.89187 0.89436 0.88259 0.88080 1.00183 1.00286 0.92837 0.91083 0.91263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 8.65 71.98 0.62 -1.64 16 2 C 0.06 1.27 2.04 44.94 0.09 1.36 16 3 H 0.03 0.86 4.52 -2.39 -0.01 0.85 16 4 C -0.11 -2.26 5.36 30.64 0.16 -2.10 16 5 C -0.13 -3.15 6.00 30.67 0.18 -2.97 16 6 C -0.11 -2.61 6.09 30.65 0.19 -2.43 16 7 C 0.05 1.28 4.05 86.33 0.35 1.63 16 8 N -0.52 -10.62 4.69 -871.13 -4.09 -14.71 16 9 C 0.06 0.90 5.08 86.30 0.44 1.34 16 10 C -0.13 -2.55 1.80 -10.72 -0.02 -2.57 16 11 H 0.06 1.47 6.04 -2.39 -0.01 1.46 16 12 C -0.10 -1.43 5.17 30.62 0.16 -1.28 16 13 C -0.13 -2.05 6.08 30.67 0.19 -1.86 16 14 C 0.10 1.99 6.34 86.36 0.55 2.53 16 15 N -0.61 -18.51 2.97 -818.91 -2.43 -20.94 16 16 C 0.51 21.21 7.70 87.66 0.67 21.88 16 17 O -0.59 -30.74 15.40 -3.04 -0.05 -30.79 16 18 C -0.11 -4.84 3.99 29.85 0.12 -4.73 16 19 C 0.05 2.62 4.26 29.85 0.13 2.75 16 20 C -0.54 -31.48 9.11 25.60 0.23 -31.25 16 21 H 0.08 4.02 7.74 -2.91 -0.02 4.00 16 22 C -0.01 -0.41 5.46 84.65 0.46 0.06 16 23 N -0.94 -60.49 13.29 21.44 0.28 -60.21 16 24 Si 0.98 44.76 29.54 68.60 2.03 46.79 16 25 H -0.25 -10.58 7.11 99.48 0.71 -9.88 16 26 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 27 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 28 C 0.11 2.82 4.21 86.36 0.36 3.19 16 29 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.06 0.98 8.13 -2.38 -0.02 0.96 16 31 H 0.06 0.91 6.27 -2.39 -0.01 0.90 16 32 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.08 1.74 7.92 -2.39 -0.02 1.72 16 39 H 0.01 0.44 5.21 -2.39 -0.01 0.43 16 40 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.09 1.30 5.26 -2.39 -0.01 1.29 16 42 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.05 1.00 8.14 -2.39 -0.02 0.99 16 45 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 46 H 0.09 1.91 5.93 -2.39 -0.01 1.89 16 47 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 48 H 0.10 3.77 7.69 -2.39 -0.02 3.75 16 49 H 0.10 3.80 7.94 -2.39 -0.02 3.78 16 50 H -0.02 -1.32 8.10 -2.38 -0.02 -1.34 16 51 H -0.02 -1.39 8.10 -2.39 -0.02 -1.41 16 52 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 53 H 0.07 1.67 8.14 -2.39 -0.02 1.66 16 54 H 0.07 2.36 3.04 -2.39 -0.01 2.35 16 Total: -1.00 -77.85 392.78 1.49 -76.37 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: 0.85 Total: 19.56 kcal Atomic # 6 Polarization: -20.96 SS G_CDS: 4.89 Total: -16.07 kcal Atomic # 7 Polarization: -89.62 SS G_CDS: -6.24 Total: -95.86 kcal Atomic # 8 Polarization: -30.74 SS G_CDS: -0.05 Total: -30.79 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -77.85 1.49 -76.37 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360197073.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.622 kcal (2) G-P(sol) polarization free energy of solvation -77.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds