Wall clock time and date at job start Tue Mar 31 2020 15:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.49812 * 2 1 4 4 C 1.53045 * 109.50053 * 120.06417 * 2 1 3 5 5 C 1.53038 * 109.54112 * 181.31980 * 4 2 1 6 6 C 1.53194 * 109.31232 * 298.63600 * 5 4 2 7 7 N 1.46927 * 108.77676 * 54.62860 * 6 5 4 8 8 C 1.34783 * 120.62541 * 126.37038 * 7 6 5 9 9 O 1.21284 * 119.99728 * 185.41903 * 8 7 6 10 10 C 1.50699 * 119.99945 * 5.41923 * 8 7 6 11 11 C 1.53120 * 109.52024 * 145.31386 * 10 8 7 12 12 C 1.53033 * 109.27439 * 177.55851 * 11 10 8 13 13 N 1.46846 * 109.52572 * 300.81214 * 12 11 10 14 14 C 1.46898 * 110.99980 * 185.84159 * 13 12 11 15 15 C 1.53000 * 109.46955 * 170.00286 * 14 13 12 16 16 C 1.52999 * 109.47095 * 179.97438 * 15 14 13 17 17 C 1.50701 * 109.47036 * 179.97438 * 16 15 14 18 18 H 1.08004 * 120.00163 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00122 * 179.97438 * 17 16 15 20 20 N 1.31513 * 119.99937 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 120.00284 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.46774 * 60.00134 * 21 19 17 23 23 H 1.48499 * 109.47056 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.46769 * 300.00486 * 21 19 17 25 25 C 1.46845 * 111.19366 * 61.74918 * 13 12 11 26 26 C 1.53043 * 109.52462 * 298.25595 * 25 13 12 27 27 C 1.46917 * 118.74253 * 306.65014 * 7 6 5 28 28 H 1.09001 * 109.47028 * 299.93492 * 1 2 3 29 29 H 1.09000 * 109.47084 * 59.93575 * 1 2 3 30 30 H 1.09003 * 109.46818 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.45961 * 61.29555 * 4 2 1 32 32 H 1.09006 * 109.44317 * 301.33224 * 4 2 1 33 33 H 1.08997 * 109.50045 * 178.68162 * 5 4 2 34 34 H 1.09003 * 109.49642 * 58.58126 * 5 4 2 35 35 H 1.09007 * 109.58378 * 294.84592 * 6 5 4 36 36 H 1.08996 * 109.58642 * 174.42398 * 6 5 4 37 37 H 1.08997 * 109.57806 * 25.15053 * 10 8 7 38 38 H 1.08996 * 109.50542 * 57.61347 * 11 10 8 39 39 H 1.09000 * 109.49960 * 297.49934 * 11 10 8 40 40 H 1.09003 * 109.46084 * 180.79975 * 12 11 10 41 41 H 1.08998 * 109.46795 * 60.83642 * 12 11 10 42 42 H 1.09003 * 109.47245 * 290.00429 * 14 13 12 43 43 H 1.08997 * 109.47116 * 50.00708 * 14 13 12 44 44 H 1.08994 * 109.47336 * 300.00377 * 15 14 13 45 45 H 1.09003 * 109.47264 * 60.00149 * 15 14 13 46 46 H 1.09000 * 109.47402 * 299.99770 * 16 15 14 47 47 H 1.08997 * 109.46869 * 60.00487 * 16 15 14 48 48 H 0.97006 * 120.00417 * 179.97438 * 20 19 17 49 49 H 1.09003 * 109.46871 * 58.26845 * 25 13 12 50 50 H 1.08998 * 109.46731 * 178.24276 * 25 13 12 51 51 H 1.09002 * 109.50023 * 299.24280 * 26 25 13 52 52 H 1.08988 * 109.53826 * 179.14118 * 26 25 13 53 53 H 1.09000 * 109.59019 * 173.13869 * 27 7 6 54 54 H 1.09003 * 109.59000 * 293.56399 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7227 1.2486 5 6 3.5709 -0.6946 1.2663 6 6 4.1054 -1.4266 0.0312 7 7 3.5046 -0.8294 -1.1693 8 6 4.2812 -0.3862 -2.1778 9 8 3.7811 0.1931 -3.1187 10 6 5.7708 -0.6102 -2.1362 11 6 6.2920 -0.8503 -3.5558 12 6 7.8127 -1.0165 -3.5143 13 7 8.4233 0.1928 -2.9476 14 6 9.8890 0.1257 -3.0197 15 6 10.4804 1.4892 -2.6562 16 6 12.0069 1.4193 -2.7307 17 6 12.5894 2.7624 -2.3733 18 1 11.9361 3.5837 -2.1180 19 6 13.9563 2.9426 -2.3711 20 7 14.7519 1.9424 -2.6814 21 14 14.6784 4.6073 -1.9273 22 1 14.2659 4.9740 -0.5486 23 1 16.1600 4.5394 -1.9997 24 1 14.1829 5.6319 -2.8812 25 6 7.9741 0.4175 -1.5677 26 6 6.4582 0.6266 -1.5509 27 6 2.0416 -0.7190 -1.2469 28 1 -0.3633 0.5128 0.8906 29 1 -0.3633 0.5148 -0.8894 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6968 -1.7569 1.2358 32 1 1.6581 -0.2236 2.1389 33 1 3.9335 -1.1890 2.1675 34 1 3.9159 0.3393 1.2540 35 1 3.8376 -2.4817 0.0875 36 1 5.1896 -1.3245 -0.0133 37 1 5.9924 -1.4782 -1.5152 38 1 6.0360 0.0012 -4.1863 39 1 5.8380 -1.7541 -3.9621 40 1 8.1886 -1.1734 -4.5254 41 1 8.0673 -1.8765 -2.8949 42 1 10.2532 -0.6266 -2.3201 43 1 10.1910 -0.1430 -4.0320 44 1 10.1161 2.2414 -3.3558 45 1 10.1784 1.7580 -1.6439 46 1 12.3709 0.6671 -2.0308 47 1 12.3093 1.1503 -3.7428 48 1 15.7136 2.0692 -2.6802 49 1 8.2279 -0.4492 -0.9573 50 1 8.4671 1.3022 -1.1648 51 1 6.2048 1.5013 -2.1499 52 1 6.1225 0.7783 -0.5252 53 1 1.7646 -0.1502 -2.1345 54 1 1.6021 -1.7153 -1.2970 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000363674320.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:55 Heat of formation + Delta-G solvation = -84.224774 kcal Electronic energy + Delta-G solvation = -27987.203545 eV Core-core repulsion = 24342.415791 eV Total energy + Delta-G solvation = -3644.787754 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.65833 -39.82840 -38.58076 -36.31364 -35.09710 -34.48645 -32.80200 -32.59014 -31.82856 -28.87741 -27.76671 -26.81919 -25.52718 -24.24875 -23.74031 -23.23921 -21.76831 -21.36093 -20.81575 -19.72260 -18.48526 -18.26826 -17.30377 -16.65966 -16.51119 -16.28678 -16.05808 -15.78234 -15.54232 -15.38418 -15.04731 -14.83380 -14.57562 -14.50785 -14.25243 -14.09495 -13.84884 -13.64431 -13.52105 -13.31193 -13.00750 -12.95760 -12.71892 -12.69406 -12.52154 -12.36948 -12.25266 -12.14094 -12.01246 -11.88692 -11.75390 -11.62942 -11.48472 -11.34874 -11.29555 -11.23747 -11.06018 -10.61460 -10.52419 -9.65178 -9.20273 -8.18811 -6.29484 1.40196 1.43446 1.51317 1.53658 1.96493 2.41665 2.95717 3.13957 3.40556 3.70000 3.76258 3.77723 3.87994 3.91911 4.06330 4.12717 4.14710 4.27281 4.32466 4.34962 4.43165 4.45687 4.50082 4.56064 4.64378 4.65904 4.70385 4.75096 4.79062 4.82538 4.84248 4.87550 4.91310 4.93675 4.96656 5.04262 5.11972 5.14016 5.15601 5.19011 5.26503 5.28250 5.30233 5.34905 5.47275 5.53804 5.57964 5.77128 5.87771 6.13598 6.25830 6.30484 6.35874 6.86945 7.13322 7.39270 8.92677 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.021919 B = 0.002104 C = 0.002017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.096957 B =13305.271496 C =13881.457621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.104 4.104 3 H 0.054 0.946 4 C -0.111 4.111 5 C -0.135 4.135 6 C 0.097 3.903 7 N -0.610 5.610 8 C 0.520 3.480 9 O -0.585 6.585 10 C -0.100 4.100 11 C -0.093 4.093 12 C 0.059 3.941 13 N -0.553 5.553 14 C 0.070 3.930 15 C -0.090 4.090 16 C 0.026 3.974 17 C -0.543 4.543 18 H 0.057 0.943 19 C -0.001 4.001 20 N -0.932 5.932 21 Si 0.964 3.036 22 H -0.266 1.266 23 H -0.282 1.282 24 H -0.269 1.269 25 C 0.056 3.944 26 C -0.093 4.093 27 C 0.113 3.887 28 H 0.066 0.934 29 H 0.050 0.950 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.097 0.903 34 H 0.056 0.944 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.116 0.884 38 H 0.057 0.943 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.047 0.953 42 H 0.031 0.969 43 H 0.066 0.934 44 H 0.046 0.954 45 H 0.052 0.948 46 H -0.007 1.007 47 H -0.009 1.009 48 H 0.263 0.737 49 H 0.048 0.952 50 H 0.073 0.927 51 H 0.053 0.947 52 H 0.089 0.911 53 H 0.065 0.935 54 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.942 -11.589 9.935 32.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.123 4.123 3 H 0.073 0.927 4 C -0.149 4.149 5 C -0.173 4.173 6 C -0.025 4.025 7 N -0.342 5.342 8 C 0.309 3.691 9 O -0.465 6.465 10 C -0.121 4.121 11 C -0.131 4.131 12 C -0.069 4.069 13 N -0.278 5.278 14 C -0.057 4.057 15 C -0.128 4.128 16 C -0.012 4.012 17 C -0.581 4.581 18 H 0.075 0.925 19 C -0.199 4.199 20 N -0.572 5.572 21 Si 0.789 3.211 22 H -0.191 1.191 23 H -0.207 1.207 24 H -0.194 1.194 25 C -0.072 4.072 26 C -0.131 4.131 27 C -0.010 4.010 28 H 0.085 0.915 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.116 0.884 34 H 0.075 0.925 35 H 0.106 0.894 36 H 0.115 0.885 37 H 0.134 0.866 38 H 0.075 0.925 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.065 0.935 42 H 0.049 0.951 43 H 0.085 0.915 44 H 0.065 0.935 45 H 0.071 0.929 46 H 0.012 0.988 47 H 0.009 0.991 48 H 0.072 0.928 49 H 0.066 0.934 50 H 0.091 0.909 51 H 0.072 0.928 52 H 0.107 0.893 53 H 0.083 0.917 54 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -29.197 -10.959 9.147 32.499 hybrid contribution 1.035 0.321 0.253 1.113 sum -28.161 -10.638 9.399 31.537 Atomic orbital electron populations 1.21742 0.93308 1.02742 1.02187 1.21387 0.96849 0.99137 0.94958 0.92740 1.21585 0.95082 1.01300 0.96926 1.21939 0.96279 1.01063 0.98016 1.22094 0.99267 0.98025 0.83085 1.48269 1.06931 1.60440 1.18607 1.20971 0.89729 0.76981 0.81405 1.90665 1.76234 1.43263 1.36298 1.21418 0.89823 1.01179 0.99714 1.21383 0.94296 1.02398 0.95041 1.22089 0.94003 0.90465 1.00318 1.61892 1.06989 1.38319 1.20610 1.21977 0.86287 0.96849 1.00618 1.21408 0.95196 0.96079 1.00124 1.18968 0.91878 0.95463 0.94842 1.21657 0.92178 0.97968 1.46261 0.92457 1.25981 0.97840 1.00878 0.95211 1.70086 1.03984 1.33290 1.49885 0.85518 0.77035 0.79394 0.79200 1.19068 1.20725 1.19418 1.22116 0.94971 1.01426 0.88682 1.21437 0.93925 0.96374 1.01377 1.21621 0.79234 1.01259 0.98866 0.91537 0.93078 0.91389 0.90528 0.90838 0.88426 0.92523 0.89352 0.88532 0.86645 0.92464 0.90263 0.90490 0.93510 0.95079 0.91550 0.93544 0.92927 0.98840 0.99099 0.92785 0.93418 0.90891 0.92785 0.89298 0.91662 0.90096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 9.20 71.98 0.66 -0.65 16 2 C -0.10 -1.25 2.86 -10.86 -0.03 -1.28 16 3 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 4 C -0.11 -0.90 5.17 30.62 0.16 -0.74 16 5 C -0.13 -1.11 6.08 30.67 0.19 -0.93 16 6 C 0.10 0.94 6.16 86.36 0.53 1.47 16 7 N -0.61 -10.16 2.98 -819.73 -2.44 -12.60 16 8 C 0.52 11.99 6.70 87.66 0.59 12.58 16 9 O -0.58 -18.80 15.64 -3.04 -0.05 -18.85 16 10 C -0.10 -1.98 1.79 -11.46 -0.02 -2.00 16 11 C -0.09 -2.12 5.08 30.65 0.16 -1.97 16 12 C 0.06 1.41 5.46 86.32 0.47 1.88 16 13 N -0.55 -16.31 4.66 -896.37 -4.17 -20.48 16 14 C 0.07 2.44 4.96 86.30 0.43 2.87 16 15 C -0.09 -3.83 5.08 30.59 0.16 -3.67 16 16 C 0.03 1.40 4.97 29.85 0.15 1.55 16 17 C -0.54 -31.56 9.11 25.60 0.23 -31.33 16 18 H 0.06 3.22 7.74 -2.91 -0.02 3.19 16 19 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 20 N -0.93 -57.30 13.29 21.45 0.28 -57.02 16 21 Si 0.96 44.91 29.54 68.60 2.03 46.94 16 22 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 23 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 24 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 25 C 0.06 1.41 5.29 86.33 0.46 1.86 16 26 C -0.09 -2.03 5.29 30.65 0.16 -1.86 16 27 C 0.11 1.75 5.70 86.22 0.49 2.24 16 28 H 0.07 0.52 8.14 -2.39 -0.02 0.51 16 29 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.07 0.48 8.14 -2.39 -0.02 0.47 16 31 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.07 0.52 8.14 -2.38 -0.02 0.50 16 33 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.09 0.58 8.14 -2.38 -0.02 0.56 16 36 H 0.10 0.83 5.43 -2.39 -0.01 0.82 16 37 H 0.12 1.63 6.19 -2.39 -0.01 1.62 16 38 H 0.06 1.65 7.78 -2.39 -0.02 1.63 16 39 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.08 1.85 8.02 -2.39 -0.02 1.83 16 41 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.03 1.06 8.12 -2.39 -0.02 1.04 16 43 H 0.07 2.34 7.99 -2.39 -0.02 2.32 16 44 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 45 H 0.05 2.15 6.43 -2.39 -0.02 2.14 16 46 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 47 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 48 H 0.26 15.21 8.31 -92.70 -0.77 14.44 16 49 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 50 H 0.07 2.06 6.21 -2.39 -0.01 2.05 16 51 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 52 H 0.09 1.53 8.01 -2.39 -0.02 1.51 16 53 H 0.06 1.38 7.00 -2.39 -0.02 1.36 16 54 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -72.05 407.39 1.71 -70.33 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: 0.83 Total: 11.28 kcal Atomic # 6 Polarization: -24.84 SS G_CDS: 5.24 Total: -19.60 kcal Atomic # 7 Polarization: -83.77 SS G_CDS: -6.33 Total: -90.10 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: -0.05 Total: -18.85 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -72.05 1.71 -70.33 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000363674320.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.893 kcal (2) G-P(sol) polarization free energy of solvation -72.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds