Wall clock time and date at job start Tue Mar 31 2020 15:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.50085 * 2 1 4 4 C 1.53040 * 109.49827 * 239.90113 * 2 1 3 5 5 C 1.53046 * 109.53758 * 178.68343 * 4 2 1 6 6 C 1.52753 * 109.38328 * 61.24198 * 5 4 2 7 7 N 1.46930 * 109.01006 * 305.58850 * 6 5 4 8 8 C 1.34772 * 120.63078 * 233.58702 * 7 6 5 9 9 O 1.21282 * 120.00428 * 184.91293 * 8 7 6 10 10 C 1.50700 * 119.99913 * 4.91103 * 8 7 6 11 11 C 1.53121 * 109.52499 * 275.36429 * 10 8 7 12 12 C 1.53043 * 109.27909 * 182.50120 * 11 10 8 13 13 N 1.46847 * 109.57054 * 59.08768 * 12 11 10 14 14 C 1.46897 * 111.00038 * 174.18983 * 13 12 11 15 15 C 1.53001 * 109.47300 * 314.21278 * 14 13 12 16 16 C 1.53004 * 109.47106 * 179.97438 * 15 14 13 17 17 C 1.50700 * 109.46844 * 179.97438 * 16 15 14 18 18 H 1.08004 * 120.00231 * 359.97438 * 17 16 15 19 19 C 1.37878 * 119.99807 * 180.02562 * 17 16 15 20 20 N 1.31512 * 120.00050 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 119.99744 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47126 * 89.99766 * 21 19 17 23 23 H 1.48501 * 109.47316 * 209.99682 * 21 19 17 24 24 H 1.48498 * 109.47216 * 329.99652 * 21 19 17 25 25 C 1.46847 * 111.20130 * 298.29004 * 13 12 11 26 26 C 1.53038 * 109.52127 * 61.74006 * 25 13 12 27 27 C 1.46924 * 118.73896 * 53.30756 * 7 6 5 28 28 H 1.08998 * 109.47220 * 299.93739 * 1 2 3 29 29 H 1.09008 * 109.47083 * 59.93507 * 1 2 3 30 30 H 1.09000 * 109.47501 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.46339 * 298.70597 * 4 2 1 32 32 H 1.09007 * 109.46219 * 58.67822 * 4 2 1 33 33 H 1.08996 * 109.49229 * 181.31702 * 5 4 2 34 34 H 1.08997 * 109.49491 * 301.37808 * 5 4 2 35 35 H 1.08995 * 109.51387 * 185.70591 * 6 5 4 36 36 H 1.09004 * 109.43297 * 65.42112 * 6 5 4 37 37 H 1.09001 * 109.52749 * 35.49223 * 10 8 7 38 38 H 1.09006 * 109.50599 * 302.39049 * 11 10 8 39 39 H 1.09002 * 109.50149 * 62.49467 * 11 10 8 40 40 H 1.08989 * 109.41422 * 299.07434 * 12 11 10 41 41 H 1.08998 * 109.45411 * 179.12517 * 12 11 10 42 42 H 1.09006 * 109.46758 * 74.20981 * 14 13 12 43 43 H 1.09001 * 109.47409 * 194.20521 * 14 13 12 44 44 H 1.08997 * 109.46799 * 299.99757 * 15 14 13 45 45 H 1.08992 * 109.47256 * 59.99283 * 15 14 13 46 46 H 1.08992 * 109.46937 * 299.99780 * 16 15 14 47 47 H 1.09003 * 109.46687 * 60.00061 * 16 15 14 48 48 H 0.96998 * 120.00030 * 180.02562 * 20 19 17 49 49 H 1.09000 * 109.45665 * 301.73170 * 25 13 12 50 50 H 1.08992 * 109.46508 * 181.75785 * 25 13 12 51 51 H 1.09006 * 109.50021 * 180.88280 * 26 25 13 52 52 H 1.08997 * 109.53683 * 60.78765 * 26 25 13 53 53 H 1.09003 * 109.58497 * 66.42942 * 27 7 6 54 54 H 1.08991 * 109.58839 * 186.71689 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7235 -1.2481 5 6 3.5709 -0.6954 -1.2657 6 6 4.1055 -1.4216 -0.0328 7 7 3.5046 -0.8288 1.1698 8 6 4.2811 -0.3849 2.1780 9 8 3.7728 0.0201 3.2020 10 6 5.7811 -0.3919 2.0330 11 6 6.3250 -1.7733 2.4080 12 6 7.8528 -1.7559 2.3191 13 7 8.3869 -0.7348 3.2292 14 6 9.8545 -0.7838 3.2723 15 6 10.3123 -2.2369 3.4137 16 6 11.8408 -2.2880 3.4580 17 6 12.2916 -3.7191 3.5979 18 1 11.5610 -4.5128 3.6504 19 6 13.6368 -4.0152 3.6599 20 7 14.5265 -3.0487 3.5965 21 14 14.1957 -5.7892 3.8326 22 1 14.3807 -6.3834 2.4843 23 1 15.4818 -5.8332 4.5736 24 1 13.1688 -6.5614 4.5772 25 6 7.9159 0.6058 2.8584 26 6 6.3902 0.6593 2.9649 27 6 2.0413 -0.7234 1.2498 28 1 -0.3633 0.5128 0.8905 29 1 -0.3634 0.5149 -0.8895 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6967 -1.7576 -1.2348 32 1 1.6583 -0.2250 -2.1389 33 1 3.9334 -1.1903 -2.1667 34 1 3.9159 0.3385 -1.2548 35 1 5.1895 -1.3160 0.0104 36 1 3.8412 -2.4775 -0.0908 37 1 6.0485 -0.1630 1.0014 38 1 6.0233 -2.0191 3.4262 39 1 5.9279 -2.5198 1.7201 40 1 8.1536 -1.5248 1.2973 41 1 8.2439 -2.7336 2.6005 42 1 10.2592 -0.3633 2.3517 43 1 10.2125 -0.2055 4.1241 44 1 9.9075 -2.6573 4.3342 45 1 9.9542 -2.8151 2.5620 46 1 12.2452 -1.8676 2.5373 47 1 12.1991 -1.7096 4.3097 48 1 15.4728 -3.2570 3.6397 49 1 8.2164 0.8258 1.8340 50 1 8.3530 1.3434 3.5313 51 1 6.0397 1.6498 2.6745 52 1 6.0890 0.4534 3.9920 53 1 1.6052 -1.7213 1.2985 54 1 1.7637 -0.1595 2.1402 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000363674321.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:59 Heat of formation + Delta-G solvation = -81.958007 kcal Electronic energy + Delta-G solvation = -28025.770259 eV Core-core repulsion = 24381.080800 eV Total energy + Delta-G solvation = -3644.689459 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.67210 -39.86953 -38.60344 -36.33034 -35.10466 -34.48589 -32.80953 -32.59789 -31.77936 -28.85179 -27.75235 -26.85021 -25.57674 -24.33138 -23.75470 -23.20853 -21.86800 -21.19882 -20.64477 -19.86330 -18.49619 -18.22588 -17.30655 -16.67491 -16.51992 -16.28000 -16.06840 -15.79340 -15.62105 -15.39689 -15.01537 -14.76496 -14.62955 -14.57626 -14.21875 -14.11107 -13.83095 -13.60727 -13.50354 -13.28320 -13.04016 -12.98291 -12.71308 -12.68129 -12.48656 -12.37116 -12.24089 -12.14372 -12.02130 -11.83937 -11.75472 -11.60957 -11.50648 -11.40301 -11.29655 -11.20442 -11.03648 -10.61528 -10.52608 -9.65688 -9.19955 -8.18734 -6.29485 1.40757 1.42298 1.53470 1.54691 1.96225 2.41873 2.96583 3.14386 3.40324 3.69737 3.76021 3.77781 3.87857 3.92239 4.07031 4.11253 4.15104 4.25915 4.32531 4.33929 4.44321 4.45462 4.50587 4.55621 4.63373 4.65250 4.70299 4.74118 4.79845 4.82805 4.85825 4.88284 4.91553 4.92072 4.96802 5.04520 5.12102 5.15337 5.17344 5.18462 5.25896 5.27894 5.30463 5.35097 5.46851 5.53214 5.57826 5.76179 5.86967 6.12775 6.24503 6.29757 6.35638 6.87415 7.12849 7.39533 8.93079 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.023628 B = 0.002104 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.761264 B =13302.909656 C =13854.959487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.101 4.101 3 H 0.060 0.940 4 C -0.112 4.112 5 C -0.134 4.134 6 C 0.096 3.904 7 N -0.610 5.610 8 C 0.520 3.480 9 O -0.584 6.584 10 C -0.100 4.100 11 C -0.095 4.095 12 C 0.051 3.949 13 N -0.551 5.551 14 C 0.069 3.931 15 C -0.096 4.096 16 C 0.025 3.975 17 C -0.541 4.541 18 H 0.060 0.940 19 C -0.002 4.002 20 N -0.933 5.933 21 Si 0.965 3.035 22 H -0.270 1.270 23 H -0.283 1.283 24 H -0.264 1.264 25 C 0.058 3.942 26 C -0.091 4.091 27 C 0.112 3.888 28 H 0.051 0.949 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.060 0.940 35 H 0.097 0.903 36 H 0.084 0.916 37 H 0.113 0.887 38 H 0.057 0.943 39 H 0.093 0.907 40 H 0.044 0.956 41 H 0.080 0.920 42 H 0.030 0.970 43 H 0.064 0.936 44 H 0.049 0.951 45 H 0.060 0.940 46 H -0.008 1.008 47 H -0.011 1.011 48 H 0.263 0.737 49 H 0.043 0.957 50 H 0.077 0.923 51 H 0.075 0.925 52 H 0.058 0.942 53 H 0.075 0.925 54 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.237 5.862 -13.556 31.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.121 4.121 3 H 0.078 0.922 4 C -0.150 4.150 5 C -0.172 4.172 6 C -0.026 4.026 7 N -0.342 5.342 8 C 0.309 3.691 9 O -0.464 6.464 10 C -0.121 4.121 11 C -0.133 4.133 12 C -0.077 4.077 13 N -0.276 5.276 14 C -0.059 4.059 15 C -0.134 4.134 16 C -0.013 4.013 17 C -0.579 4.579 18 H 0.078 0.922 19 C -0.200 4.200 20 N -0.574 5.574 21 Si 0.789 3.211 22 H -0.196 1.196 23 H -0.209 1.209 24 H -0.189 1.189 25 C -0.069 4.069 26 C -0.129 4.129 27 C -0.010 4.010 28 H 0.070 0.930 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.115 0.885 34 H 0.079 0.921 35 H 0.115 0.885 36 H 0.102 0.898 37 H 0.130 0.870 38 H 0.075 0.925 39 H 0.111 0.889 40 H 0.062 0.938 41 H 0.098 0.902 42 H 0.048 0.952 43 H 0.082 0.918 44 H 0.068 0.932 45 H 0.079 0.921 46 H 0.011 0.989 47 H 0.008 0.992 48 H 0.072 0.928 49 H 0.062 0.938 50 H 0.095 0.905 51 H 0.093 0.907 52 H 0.077 0.923 53 H 0.093 0.907 54 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -28.516 6.000 -12.554 31.730 hybrid contribution 1.064 -0.338 -0.282 1.151 sum -27.452 5.662 -12.837 30.830 Atomic orbital electron populations 1.21748 0.93375 1.02645 1.02280 1.21453 0.96765 0.99224 0.94630 0.92154 1.21591 0.95106 1.01213 0.97074 1.21863 0.96271 1.01223 0.97879 1.22014 0.99317 0.97999 0.83262 1.48241 1.06927 1.60435 1.18560 1.20947 0.89967 0.75765 0.82397 1.90661 1.76320 1.49358 1.30074 1.21394 0.89925 0.98246 1.02561 1.21502 0.94514 0.94811 1.02444 1.22201 0.94397 0.96560 0.94529 1.61972 1.08454 1.05193 1.51959 1.22002 0.86513 0.97449 0.99910 1.21549 0.95956 0.95041 1.00812 1.18978 0.91991 0.95520 0.94769 1.21684 0.92222 0.94115 1.49836 0.92208 1.25993 0.97115 1.01988 0.94906 1.70097 1.01559 1.34030 1.51670 0.85448 0.77672 0.79418 0.78519 1.19589 1.20864 1.18851 1.22093 0.94981 0.90237 0.99611 1.21347 0.93732 0.98049 0.99779 1.21712 0.79189 1.01169 0.98930 0.92979 0.91357 0.91696 0.90896 0.90618 0.88547 0.92109 0.88520 0.89750 0.86960 0.92461 0.88860 0.93782 0.90221 0.95223 0.91766 0.93205 0.92126 0.98925 0.99212 0.92826 0.93839 0.90479 0.90662 0.92275 0.90672 0.91531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.20 71.98 0.66 -0.59 16 2 C -0.10 -1.14 2.87 -10.72 -0.03 -1.18 16 3 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 4 C -0.11 -0.88 5.17 30.62 0.16 -0.72 16 5 C -0.13 -1.06 6.06 30.53 0.19 -0.88 16 6 C 0.10 1.00 5.82 86.22 0.50 1.50 16 7 N -0.61 -10.37 2.98 -819.76 -2.44 -12.81 16 8 C 0.52 12.07 6.81 87.66 0.60 12.66 16 9 O -0.58 -18.62 15.48 -3.04 -0.05 -18.66 16 10 C -0.10 -2.01 1.72 -11.46 -0.02 -2.03 16 11 C -0.09 -2.01 5.19 30.65 0.16 -1.85 16 12 C 0.05 1.29 4.85 86.33 0.42 1.71 16 13 N -0.55 -16.23 4.81 -896.38 -4.31 -20.53 16 14 C 0.07 2.39 5.27 86.30 0.46 2.85 16 15 C -0.10 -3.96 4.40 30.60 0.13 -3.83 16 16 C 0.03 1.33 4.97 29.85 0.15 1.48 16 17 C -0.54 -30.97 9.11 25.60 0.23 -30.74 16 18 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 19 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 20 N -0.93 -57.14 13.29 21.45 0.28 -56.85 16 21 Si 0.96 44.43 29.54 68.60 2.03 46.45 16 22 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 23 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 24 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 25 C 0.06 1.43 5.42 86.33 0.47 1.90 16 26 C -0.09 -2.12 4.95 30.65 0.15 -1.97 16 27 C 0.11 1.78 5.71 86.36 0.49 2.27 16 28 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.07 0.49 8.14 -2.38 -0.02 0.47 16 30 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.08 0.49 8.14 -2.38 -0.02 0.47 16 33 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.10 0.91 5.05 -2.39 -0.01 0.89 16 36 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.11 1.73 6.51 -2.39 -0.02 1.71 16 38 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 39 H 0.09 1.50 7.31 -2.39 -0.02 1.49 16 40 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.08 2.24 5.81 -2.39 -0.01 2.23 16 42 H 0.03 1.02 8.08 -2.38 -0.02 1.00 16 43 H 0.06 2.31 8.14 -2.39 -0.02 2.30 16 44 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 45 H 0.06 2.37 6.21 -2.39 -0.01 2.35 16 46 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 47 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 48 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 49 H 0.04 0.96 8.14 -2.39 -0.02 0.95 16 50 H 0.08 1.88 8.12 -2.39 -0.02 1.86 16 51 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 52 H 0.06 1.70 7.79 -2.39 -0.02 1.68 16 53 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 54 H 0.07 1.39 7.04 -2.39 -0.02 1.38 16 Total: -1.00 -70.90 404.92 1.52 -69.38 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: 0.83 Total: 12.13 kcal Atomic # 6 Polarization: -24.28 SS G_CDS: 5.18 Total: -19.10 kcal Atomic # 7 Polarization: -83.73 SS G_CDS: -6.46 Total: -90.20 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: -0.05 Total: -18.66 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.45 kcal Total: -70.90 1.52 -69.38 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000363674321.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.582 kcal (2) G-P(sol) polarization free energy of solvation -70.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds