Wall clock time and date at job start Tue Mar 31 2020 15:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47285 * 2 1 4 4 C 1.53003 * 109.47003 * 119.99778 * 2 1 3 5 5 C 1.50694 * 109.47016 * 297.64442 * 4 2 1 6 6 H 1.07997 * 120.00120 * 4.85301 * 5 4 2 7 7 C 1.37882 * 120.00028 * 184.86149 * 5 4 2 8 8 N 1.31520 * 119.99779 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00269 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46922 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46699 * 119.99730 * 9 7 5 12 12 H 1.48494 * 109.47276 * 239.99739 * 9 7 5 13 13 N 1.46903 * 109.47059 * 239.99837 * 2 1 3 14 14 C 1.46850 * 110.99815 * 187.86158 * 13 2 1 15 15 C 1.53041 * 109.52225 * 174.16045 * 14 13 2 16 16 C 1.53120 * 109.27791 * 59.17795 * 15 14 13 17 17 C 1.50699 * 109.52203 * 182.43814 * 16 15 14 18 18 O 1.21282 * 120.00063 * 23.97300 * 17 16 15 19 19 N 1.34773 * 120.00116 * 203.96787 * 17 16 15 20 20 C 1.46928 * 120.62643 * 4.87950 * 19 17 16 21 21 C 1.52761 * 109.00695 * 233.58175 * 20 19 17 22 22 C 1.53039 * 109.38600 * 305.59177 * 21 20 19 23 23 C 1.53046 * 109.53887 * 61.23763 * 22 21 20 24 24 H 1.09002 * 109.51930 * 58.60447 * 23 22 21 25 25 C 1.52992 * 109.49871 * 178.68178 * 23 22 21 26 26 C 1.46924 * 120.63110 * 185.16315 * 19 17 16 27 27 C 1.53118 * 109.16283 * 302.34872 * 16 15 14 28 28 C 1.46849 * 110.99807 * 63.65496 * 13 2 1 29 29 H 1.09001 * 109.47285 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47024 * 300.00295 * 1 2 3 31 31 H 1.09003 * 109.47012 * 60.00150 * 1 2 3 32 32 H 1.08994 * 109.47038 * 57.64448 * 4 2 1 33 33 H 1.09001 * 109.46767 * 177.64302 * 4 2 1 34 34 H 0.96997 * 120.00139 * 180.02562 * 8 7 5 35 35 H 1.09003 * 109.46224 * 294.17669 * 14 13 2 36 36 H 1.08998 * 109.46092 * 54.14737 * 14 13 2 37 37 H 1.09000 * 109.50086 * 299.24132 * 15 14 13 38 38 H 1.08996 * 109.50443 * 179.12282 * 15 14 13 39 39 H 1.09001 * 109.51688 * 62.25010 * 16 15 14 40 40 H 1.08998 * 109.59079 * 353.41978 * 20 19 17 41 41 H 1.09007 * 109.58493 * 113.84607 * 20 19 17 42 42 H 1.09000 * 109.56904 * 185.55479 * 21 20 19 43 43 H 1.08998 * 109.38831 * 65.51733 * 21 20 19 44 44 H 1.09001 * 109.46351 * 301.21814 * 22 21 20 45 45 H 1.09001 * 109.45040 * 181.25332 * 22 21 20 46 46 H 1.09005 * 109.47437 * 179.83842 * 25 23 22 47 47 H 1.09000 * 109.47384 * 299.84067 * 25 23 22 48 48 H 1.09005 * 109.47150 * 59.84269 * 25 23 22 49 49 H 1.09003 * 109.58377 * 246.15378 * 26 19 17 50 50 H 1.09003 * 109.58754 * 6.43612 * 26 19 17 51 51 H 1.09003 * 109.50278 * 297.71301 * 27 16 15 52 52 H 1.08998 * 109.50384 * 177.59423 * 27 16 15 53 53 H 1.08995 * 109.46297 * 305.85215 * 28 13 2 54 54 H 1.09000 * 109.46032 * 65.82368 * 28 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.5858 0.0221 2.4790 6 1 0.9283 0.8735 2.3832 7 6 2.0100 -0.3845 3.7263 8 7 2.8105 -1.4215 3.8429 9 14 1.4477 0.5373 5.2506 10 1 0.5575 1.6570 4.8516 11 1 0.7070 -0.3891 6.1441 12 1 2.6310 1.0764 5.9677 13 7 2.0196 -0.6925 -1.1994 14 6 3.4755 -0.8767 -1.1433 15 6 3.9298 -1.7256 -2.3329 16 6 3.5352 -1.0234 -3.6351 17 6 3.9267 -1.8829 -4.8093 18 8 4.0536 -3.0808 -4.6684 19 7 4.1357 -1.3206 -6.0162 20 6 4.0904 0.1389 -6.1798 21 6 3.1067 0.4841 -7.2963 22 6 3.4907 -0.2795 -8.5658 23 6 3.4141 -1.7849 -8.3005 24 1 2.4042 -2.0484 -7.9863 25 6 3.7663 -2.5473 -9.5793 26 6 4.4069 -2.1555 -7.1943 27 6 2.0204 -0.8002 -3.6467 28 6 1.6214 0.0219 -2.4190 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6425 -1.7359 1.2707 33 1 3.1291 -0.7579 1.2284 34 1 3.1086 -1.7079 4.7204 35 1 3.9663 0.0958 -1.1825 36 1 3.7422 -1.3808 -0.2144 37 1 3.4499 -2.7031 -2.2867 38 1 5.0123 -1.8490 -2.2995 39 1 4.0455 -0.0624 -3.6997 40 1 3.7615 0.6010 -5.2490 41 1 5.0818 0.5079 -6.4430 42 1 3.1387 1.5558 -7.4927 43 1 2.0994 0.2001 -6.9917 44 1 4.5070 -0.0133 -8.8564 45 1 2.8027 -0.0170 -9.3694 46 1 3.7145 -3.6194 -9.3891 47 1 3.0596 -2.2833 -10.3661 48 1 4.7759 -2.2826 -9.8938 49 1 5.4245 -1.9774 -7.5419 50 1 4.2891 -3.2069 -6.9320 51 1 1.5105 -1.7632 -3.6212 52 1 1.7387 -0.2624 -4.5520 53 1 0.5416 0.1705 -2.4168 54 1 2.1210 0.9901 -2.4522 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411175989.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:04 Heat of formation + Delta-G solvation = -75.143941 kcal Electronic energy + Delta-G solvation = -28709.826793 eV Core-core repulsion = 25065.432813 eV Total energy + Delta-G solvation = -3644.393979 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.67466 -39.96389 -38.63288 -36.40090 -34.93368 -34.36779 -32.76535 -32.00935 -31.69750 -28.79398 -27.98956 -26.90739 -25.79090 -24.89979 -23.54851 -23.20948 -21.77663 -20.98884 -20.64604 -19.72427 -18.67058 -18.23380 -17.27955 -16.61092 -16.55767 -16.17428 -15.84252 -15.74505 -15.39363 -15.28105 -15.00220 -14.68998 -14.61977 -14.43593 -14.19738 -14.07787 -13.78072 -13.55193 -13.49944 -13.12324 -13.10758 -12.97114 -12.74883 -12.64898 -12.53117 -12.29890 -12.14522 -12.13987 -12.00593 -11.87863 -11.81860 -11.68130 -11.59171 -11.39609 -11.27899 -11.11982 -10.82914 -10.60388 -10.49133 -9.64602 -9.08807 -8.16602 -6.26044 1.40599 1.41273 1.54002 1.54799 1.96977 2.41895 3.05904 3.17231 3.42485 3.70730 3.78293 3.79871 3.89166 3.93734 4.09550 4.16962 4.20242 4.33008 4.34492 4.36019 4.46433 4.50653 4.53691 4.58900 4.65903 4.66802 4.68817 4.79243 4.81390 4.83687 4.87214 4.89989 4.94230 4.96994 5.05021 5.13859 5.14866 5.18261 5.22474 5.27689 5.28237 5.32279 5.34318 5.44791 5.49609 5.53769 5.59818 5.74495 5.82931 6.16254 6.36199 6.41330 6.44202 6.91013 7.14116 7.42196 8.95812 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.031052 B = 0.002388 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.487042 B =11722.045988 C =12143.596751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.097 3.903 3 H 0.026 0.974 4 C 0.036 3.964 5 C -0.528 4.528 6 H 0.065 0.935 7 C -0.003 4.003 8 N -0.935 5.935 9 Si 0.963 3.037 10 H -0.259 1.259 11 H -0.282 1.282 12 H -0.280 1.280 13 N -0.549 5.549 14 C 0.060 3.940 15 C -0.089 4.089 16 C -0.098 4.098 17 C 0.520 3.480 18 O -0.586 6.586 19 N -0.609 5.609 20 C 0.095 3.905 21 C -0.133 4.133 22 C -0.111 4.111 23 C -0.102 4.102 24 H 0.059 0.941 25 C -0.142 4.142 26 C 0.112 3.888 27 C -0.090 4.090 28 C 0.055 3.945 29 H 0.042 0.958 30 H 0.054 0.946 31 H 0.069 0.931 32 H -0.016 1.016 33 H -0.001 1.001 34 H 0.261 0.739 35 H 0.036 0.964 36 H 0.056 0.944 37 H 0.053 0.947 38 H 0.066 0.934 39 H 0.115 0.885 40 H 0.097 0.903 41 H 0.084 0.916 42 H 0.099 0.901 43 H 0.062 0.938 44 H 0.073 0.927 45 H 0.076 0.924 46 H 0.049 0.951 47 H 0.068 0.932 48 H 0.065 0.935 49 H 0.076 0.924 50 H 0.063 0.937 51 H 0.054 0.946 52 H 0.099 0.901 53 H 0.089 0.911 54 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.644 7.325 -29.215 30.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.011 4.011 3 H 0.044 0.956 4 C -0.002 4.002 5 C -0.567 4.567 6 H 0.083 0.917 7 C -0.200 4.200 8 N -0.575 5.575 9 Si 0.788 3.212 10 H -0.182 1.182 11 H -0.208 1.208 12 H -0.206 1.206 13 N -0.275 5.275 14 C -0.068 4.068 15 C -0.127 4.127 16 C -0.120 4.120 17 C 0.309 3.691 18 O -0.466 6.466 19 N -0.341 5.341 20 C -0.026 4.026 21 C -0.171 4.171 22 C -0.149 4.149 23 C -0.121 4.121 24 H 0.077 0.923 25 C -0.200 4.200 26 C -0.010 4.010 27 C -0.128 4.128 28 C -0.072 4.072 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.002 0.998 33 H 0.017 0.983 34 H 0.070 0.930 35 H 0.054 0.946 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.085 0.915 39 H 0.132 0.868 40 H 0.115 0.885 41 H 0.102 0.898 42 H 0.117 0.883 43 H 0.081 0.919 44 H 0.092 0.908 45 H 0.095 0.905 46 H 0.068 0.932 47 H 0.087 0.913 48 H 0.084 0.916 49 H 0.095 0.905 50 H 0.082 0.918 51 H 0.073 0.927 52 H 0.117 0.883 53 H 0.107 0.893 54 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 1.585 6.153 -29.053 29.739 hybrid contribution 0.444 0.355 1.436 1.545 sum 2.029 6.508 -27.616 28.445 Atomic orbital electron populations 1.21668 0.93868 1.01206 1.01213 1.21511 0.96093 0.94302 0.89175 0.95591 1.19076 0.94846 0.94351 0.91887 1.21659 1.28857 1.14139 0.92032 0.91661 1.25967 0.95281 0.96044 1.02724 1.70131 1.35638 1.27349 1.24420 0.85426 0.78180 0.78718 0.78885 1.18241 1.20795 1.20627 1.61939 1.12050 1.50905 1.02563 1.22011 0.88105 0.98408 0.98276 1.21323 1.00326 0.98722 0.92357 1.21382 0.99142 0.99600 0.91828 1.20927 0.75449 0.88014 0.84677 1.90666 1.53458 1.17704 1.84758 1.48233 1.69890 1.08610 1.07378 1.22033 1.01350 0.78031 1.01205 1.21866 0.98847 1.01849 0.94562 1.21586 1.02769 0.92775 0.97753 1.21457 0.98510 0.97185 0.94980 0.92257 1.21746 1.02456 0.99639 0.96184 1.21714 0.99341 0.95136 0.84815 1.21458 0.92013 1.00929 0.98403 1.22182 1.01666 0.94852 0.88544 0.93888 0.92736 0.91266 0.99778 0.98324 0.93018 0.94582 0.92558 0.92843 0.91487 0.86751 0.88505 0.89786 0.88292 0.91933 0.90840 0.90524 0.93175 0.91288 0.91605 0.90534 0.91845 0.92721 0.88303 0.89304 0.93757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.53 8.85 71.98 0.64 -3.89 16 2 C 0.10 4.02 2.14 44.91 0.10 4.12 16 3 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 4 C 0.04 1.91 4.08 29.85 0.12 2.03 16 5 C -0.53 -29.83 8.48 25.60 0.22 -29.62 16 6 H 0.07 3.50 6.70 -2.91 -0.02 3.48 16 7 C 0.00 -0.16 5.46 84.66 0.46 0.30 16 8 N -0.93 -57.92 13.29 21.45 0.28 -57.64 16 9 Si 0.96 44.58 29.54 68.60 2.03 46.60 16 10 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 12 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 13 N -0.55 -19.86 4.52 -871.09 -3.94 -23.80 16 14 C 0.06 2.17 5.05 86.33 0.44 2.61 16 15 C -0.09 -2.84 4.94 30.65 0.15 -2.69 16 16 C -0.10 -2.38 1.75 -11.46 -0.02 -2.40 16 17 C 0.52 13.78 6.82 87.66 0.60 14.38 16 18 O -0.59 -21.08 15.47 -3.03 -0.05 -21.13 16 19 N -0.61 -11.51 2.98 -819.74 -2.44 -13.95 16 20 C 0.10 1.07 6.19 86.22 0.53 1.61 16 21 C -0.13 -1.09 6.06 30.53 0.19 -0.91 16 22 C -0.11 -0.93 5.17 30.62 0.16 -0.77 16 23 C -0.10 -1.28 2.87 -10.72 -0.03 -1.32 16 24 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 25 C -0.14 -1.42 9.20 71.98 0.66 -0.76 16 26 C 0.11 1.97 5.71 86.36 0.49 2.46 16 27 C -0.09 -2.05 5.25 30.65 0.16 -1.89 16 28 C 0.05 1.44 5.27 86.33 0.46 1.89 16 29 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.05 2.13 6.68 -2.38 -0.02 2.11 16 31 H 0.07 2.03 6.37 -2.39 -0.02 2.01 16 32 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 33 H 0.00 -0.09 6.05 -2.39 -0.01 -0.10 16 34 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 35 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.06 2.47 5.79 -2.39 -0.01 2.46 16 37 H 0.05 2.01 7.79 -2.39 -0.02 1.99 16 38 H 0.07 2.05 8.14 -2.39 -0.02 2.04 16 39 H 0.11 2.15 6.32 -2.39 -0.02 2.14 16 40 H 0.10 0.99 5.16 -2.39 -0.01 0.97 16 41 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 42 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 43 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 44 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 45 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 46 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 47 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 48 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 49 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 50 H 0.06 1.48 7.04 -2.39 -0.02 1.46 16 51 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 52 H 0.10 1.59 7.83 -2.39 -0.02 1.58 16 53 H 0.09 2.16 6.13 -2.39 -0.01 2.15 16 54 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -72.93 398.98 2.04 -70.89 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: 0.84 Total: 13.88 kcal Atomic # 6 Polarization: -20.17 SS G_CDS: 5.32 Total: -14.85 kcal Atomic # 7 Polarization: -89.29 SS G_CDS: -6.10 Total: -95.39 kcal Atomic # 8 Polarization: -21.08 SS G_CDS: -0.05 Total: -21.13 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.60 kcal Total: -72.93 2.04 -70.89 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411175989.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.253 kcal (2) G-P(sol) polarization free energy of solvation -72.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds