Wall clock time and date at job start Tue Mar 31 2020 15:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47321 * 2 1 4 4 C 1.53002 * 109.47160 * 120.00199 * 2 1 3 5 5 C 1.50699 * 109.47358 * 182.84521 * 4 2 1 6 6 H 1.08004 * 119.99712 * 359.97438 * 5 4 2 7 7 C 1.37876 * 120.00334 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99776 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00075 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47407 * 59.99960 * 9 7 5 11 11 H 1.48499 * 109.47025 * 180.02562 * 9 7 5 12 12 H 1.48510 * 109.47150 * 299.99782 * 9 7 5 13 13 N 1.46898 * 109.47139 * 240.00097 * 2 1 3 14 14 C 1.46841 * 110.99899 * 70.97749 * 13 2 1 15 15 C 1.53046 * 109.51067 * 174.15838 * 14 13 2 16 16 C 1.53115 * 109.28050 * 59.18423 * 15 14 13 17 17 C 1.50699 * 109.52094 * 182.43902 * 16 15 14 18 18 O 1.21280 * 120.00006 * 97.05335 * 17 16 15 19 19 N 1.34779 * 120.00240 * 277.04646 * 17 16 15 20 20 C 1.46923 * 120.62943 * 355.15699 * 19 17 16 21 21 C 1.53187 * 108.77723 * 126.36441 * 20 19 17 22 22 C 1.53039 * 109.31266 * 54.63868 * 21 20 19 23 23 C 1.53049 * 109.53360 * 298.63209 * 22 21 20 24 24 H 1.09000 * 109.49546 * 301.37884 * 23 22 21 25 25 C 1.52996 * 109.49466 * 181.31623 * 23 22 21 26 26 C 1.46927 * 120.63099 * 174.86986 * 19 17 16 27 27 C 1.53117 * 109.16245 * 302.34686 * 16 15 14 28 28 C 1.46852 * 110.99138 * 306.77355 * 13 2 1 29 29 H 1.09002 * 109.47709 * 60.00083 * 1 2 3 30 30 H 1.09000 * 109.47321 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47495 * 300.00018 * 1 2 3 32 32 H 1.09002 * 109.47074 * 302.84031 * 4 2 1 33 33 H 1.08994 * 109.47196 * 62.83982 * 4 2 1 34 34 H 0.96999 * 119.99984 * 179.97438 * 8 7 5 35 35 H 1.08996 * 109.46150 * 54.14987 * 14 13 2 36 36 H 1.08997 * 109.46325 * 294.16151 * 14 13 2 37 37 H 1.09003 * 109.50020 * 179.12843 * 15 14 13 38 38 H 1.09000 * 109.50425 * 299.19987 * 15 14 13 39 39 H 1.09005 * 109.52222 * 62.25055 * 16 15 14 40 40 H 1.09002 * 109.58592 * 246.15402 * 20 19 17 41 41 H 1.09009 * 109.58867 * 6.57458 * 20 19 17 42 42 H 1.09006 * 109.50049 * 174.58600 * 21 20 19 43 43 H 1.08994 * 109.49824 * 294.68384 * 21 20 19 44 44 H 1.09001 * 109.46506 * 58.65207 * 22 21 20 45 45 H 1.09002 * 109.46343 * 178.62755 * 22 21 20 46 46 H 1.08997 * 109.47305 * 60.00324 * 25 23 22 47 47 H 1.09000 * 109.46875 * 179.97438 * 25 23 22 48 48 H 1.08998 * 109.47551 * 300.00126 * 25 23 22 49 49 H 1.08994 * 109.58400 * 353.42436 * 26 19 17 50 50 H 1.09008 * 109.57770 * 113.84764 * 26 19 17 51 51 H 1.08996 * 109.50706 * 177.60057 * 27 16 15 52 52 H 1.09009 * 109.50017 * 297.71387 * 27 16 15 53 53 H 1.09003 * 109.46980 * 65.82968 * 28 13 2 54 54 H 1.08999 * 109.45590 * 305.85780 * 28 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5453 -0.6605 1.2850 6 1 4.0844 -0.1581 0.4955 7 6 4.2344 -1.2464 2.3257 8 7 3.5779 -1.8577 3.2874 9 14 6.1003 -1.1716 2.3696 10 1 6.5383 0.2469 2.4029 11 1 6.5953 -1.8716 3.5822 12 1 6.6509 -1.8314 1.1584 13 7 2.0196 -0.6925 -1.1994 14 6 1.7737 0.1074 -2.4061 15 6 2.4236 -0.5742 -3.6124 16 6 1.8339 -1.9774 -3.7786 17 6 2.5127 -2.6760 -4.9285 18 8 3.4303 -3.4404 -4.7172 19 7 2.1001 -2.4514 -6.1918 20 6 0.9238 -1.6120 -6.4570 21 6 1.3167 -0.5111 -7.4471 22 6 1.9282 -1.1489 -8.6966 23 6 3.1902 -1.9239 -8.3102 24 1 3.9025 -1.2471 -7.8385 25 6 3.8189 -2.5338 -9.5646 26 6 2.8218 -3.0362 -7.3302 27 6 2.0604 -2.7737 -2.4905 28 6 1.4211 -2.0283 -1.3168 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6356 -0.2377 2.1385 33 1 1.7188 -1.7626 1.2241 34 1 4.0627 -2.2702 4.0193 35 1 2.2018 1.1014 -2.2763 36 1 0.7000 0.1932 -2.5724 37 1 2.2279 0.0116 -4.5105 38 1 3.4995 -0.6475 -3.4531 39 1 0.7647 -1.9021 -3.9770 40 1 0.1287 -2.2221 -6.8855 41 1 0.5796 -1.1606 -5.5263 42 1 0.4313 0.0600 -7.7264 43 1 2.0465 0.1522 -6.9829 44 1 1.2067 -1.8309 -9.1465 45 1 2.1864 -0.3691 -9.4131 46 1 4.0806 -1.7390 -10.2631 47 1 4.7178 -3.0853 -9.2890 48 1 3.1066 -3.2113 -10.0355 49 1 3.7295 -3.5243 -6.9755 50 1 2.1845 -3.7649 -7.8313 51 1 1.6052 -3.7593 -2.5871 52 1 3.1305 -2.8822 -2.3132 53 1 0.3489 -1.9323 -1.4882 54 1 1.5931 -2.5854 -0.3959 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411175997.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:07 Heat of formation + Delta-G solvation = -74.178865 kcal Electronic energy + Delta-G solvation = -29140.594424 eV Core-core repulsion = 25496.242293 eV Total energy + Delta-G solvation = -3644.352131 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.66959 -40.02569 -38.64180 -36.27621 -34.89482 -34.34552 -32.73991 -31.87054 -31.30513 -29.13180 -27.93178 -26.85901 -25.51332 -24.84046 -24.01210 -23.20853 -21.87522 -21.09332 -20.22310 -19.63159 -18.35085 -18.20699 -17.26001 -16.74273 -16.55448 -16.16226 -15.81668 -15.68695 -15.39955 -15.21481 -14.96200 -14.81750 -14.57890 -14.26281 -14.21034 -13.91772 -13.60768 -13.58530 -13.50711 -13.20191 -13.02985 -12.93304 -12.82831 -12.59838 -12.56409 -12.46335 -12.36706 -12.04271 -11.96645 -11.81902 -11.75887 -11.67039 -11.46793 -11.37914 -11.28003 -11.07429 -10.92929 -10.57406 -10.46028 -9.63557 -8.81029 -8.09582 -6.12980 1.38884 1.42714 1.49392 1.56367 1.98638 2.46876 3.13379 3.28193 3.45494 3.74177 3.80353 3.83280 3.89857 3.94368 4.10389 4.19399 4.20999 4.34238 4.38458 4.41715 4.43755 4.48763 4.55877 4.59575 4.65170 4.66137 4.73082 4.77229 4.82152 4.84251 4.88231 4.89765 4.93937 4.98658 5.04189 5.13655 5.17037 5.22062 5.23005 5.27324 5.28472 5.29766 5.32274 5.44721 5.50365 5.53156 5.61025 5.74746 5.92007 6.35804 6.37942 6.52947 6.61979 7.01225 7.16238 7.52364 9.02297 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.017267 B = 0.003065 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.179057 B = 9133.765169 C = 9978.237091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.096 3.904 3 H 0.066 0.934 4 C 0.035 3.965 5 C -0.496 4.496 6 H 0.056 0.944 7 C -0.005 4.005 8 N -0.940 5.940 9 Si 0.951 3.049 10 H -0.267 1.267 11 H -0.286 1.286 12 H -0.279 1.279 13 N -0.539 5.539 14 C 0.059 3.941 15 C -0.092 4.092 16 C -0.094 4.094 17 C 0.517 3.483 18 O -0.589 6.589 19 N -0.609 5.609 20 C 0.096 3.904 21 C -0.133 4.133 22 C -0.111 4.111 23 C -0.103 4.103 24 H 0.056 0.944 25 C -0.142 4.142 26 C 0.112 3.888 27 C -0.092 4.092 28 C 0.068 3.932 29 H 0.073 0.927 30 H 0.051 0.949 31 H 0.055 0.945 32 H -0.008 1.008 33 H -0.006 1.006 34 H 0.258 0.742 35 H 0.076 0.924 36 H 0.055 0.945 37 H 0.098 0.902 38 H 0.044 0.956 39 H 0.121 0.879 40 H 0.086 0.914 41 H 0.099 0.901 42 H 0.100 0.900 43 H 0.060 0.940 44 H 0.075 0.925 45 H 0.075 0.925 46 H 0.068 0.932 47 H 0.048 0.952 48 H 0.067 0.933 49 H 0.060 0.940 50 H 0.078 0.922 51 H 0.066 0.934 52 H 0.041 0.959 53 H 0.051 0.949 54 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.356 3.843 -28.470 30.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.012 4.012 3 H 0.084 0.916 4 C -0.002 4.002 5 C -0.534 4.534 6 H 0.074 0.926 7 C -0.201 4.201 8 N -0.583 5.583 9 Si 0.777 3.223 10 H -0.192 1.192 11 H -0.212 1.212 12 H -0.205 1.205 13 N -0.264 5.264 14 C -0.069 4.069 15 C -0.130 4.130 16 C -0.115 4.115 17 C 0.307 3.693 18 O -0.469 6.469 19 N -0.341 5.341 20 C -0.026 4.026 21 C -0.171 4.171 22 C -0.148 4.148 23 C -0.122 4.122 24 H 0.074 0.926 25 C -0.200 4.200 26 C -0.010 4.010 27 C -0.130 4.130 28 C -0.060 4.060 29 H 0.092 0.908 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.011 0.989 33 H 0.012 0.988 34 H 0.066 0.934 35 H 0.094 0.906 36 H 0.073 0.927 37 H 0.117 0.883 38 H 0.063 0.937 39 H 0.139 0.861 40 H 0.105 0.895 41 H 0.117 0.883 42 H 0.119 0.881 43 H 0.078 0.922 44 H 0.093 0.907 45 H 0.094 0.906 46 H 0.087 0.913 47 H 0.067 0.933 48 H 0.086 0.914 49 H 0.078 0.922 50 H 0.096 0.904 51 H 0.085 0.915 52 H 0.060 0.940 53 H 0.069 0.931 54 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -9.342 3.300 -28.172 29.864 hybrid contribution 0.659 -0.442 0.805 1.130 sum -8.683 2.858 -27.368 28.854 Atomic orbital electron populations 1.22378 0.96797 1.01717 1.02242 1.21581 0.92335 0.97025 0.90225 0.91569 1.19064 0.94958 0.94323 0.91892 1.21472 0.93275 1.32890 1.05774 0.92623 1.25804 1.02532 0.95907 0.95849 1.70073 1.36871 1.38858 1.12450 0.85720 0.81196 0.78466 0.76927 1.19174 1.21178 1.20519 1.61853 1.59688 1.02563 1.02280 1.22102 0.99130 0.96708 0.88914 1.21466 0.99778 0.93076 0.98706 1.21352 1.01916 0.96319 0.91923 1.21033 0.82760 0.80803 0.84736 1.90673 1.32372 1.38723 1.85097 1.48237 1.30502 1.50569 1.04817 1.22139 0.86415 0.92614 1.01406 1.21943 1.02323 0.97268 0.95602 1.21585 0.95936 0.99725 0.97587 1.21385 0.98295 0.96691 0.95852 0.92588 1.21743 1.00563 1.01293 0.96394 1.21612 0.96945 0.96071 0.86388 1.21329 1.00832 0.97833 0.93054 1.21905 0.96143 0.90408 0.97511 0.90831 0.93025 0.92622 0.98936 0.98759 0.93350 0.90573 0.92660 0.88346 0.93734 0.86121 0.89531 0.88296 0.88130 0.92162 0.90656 0.90588 0.91289 0.93333 0.91445 0.92163 0.90363 0.91519 0.93971 0.93115 0.93340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.39 8.43 71.98 0.61 -4.78 16 2 C 0.10 3.83 2.27 44.91 0.10 3.93 16 3 H 0.07 2.64 7.97 -2.39 -0.02 2.62 16 4 C 0.03 1.83 4.36 29.85 0.13 1.96 16 5 C -0.50 -28.95 8.78 25.60 0.22 -28.73 16 6 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 7 C -0.01 -0.31 5.46 84.65 0.46 0.15 16 8 N -0.94 -59.32 13.29 21.45 0.28 -59.04 16 9 Si 0.95 47.58 29.54 68.60 2.03 49.61 16 10 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 11 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 12 H -0.28 -13.99 7.11 99.48 0.71 -13.28 16 13 N -0.54 -19.92 4.25 -871.13 -3.70 -23.62 16 14 C 0.06 1.57 5.15 86.33 0.44 2.02 16 15 C -0.09 -2.27 5.23 30.65 0.16 -2.11 16 16 C -0.09 -2.36 1.73 -11.46 -0.02 -2.38 16 17 C 0.52 14.54 6.83 87.66 0.60 15.13 16 18 O -0.59 -22.66 15.45 -3.03 -0.05 -22.71 16 19 N -0.61 -12.09 2.98 -819.74 -2.44 -14.53 16 20 C 0.10 1.08 6.11 86.36 0.53 1.61 16 21 C -0.13 -1.15 6.08 30.67 0.19 -0.96 16 22 C -0.11 -0.99 5.17 30.62 0.16 -0.84 16 23 C -0.10 -1.42 2.86 -10.86 -0.03 -1.45 16 24 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 25 C -0.14 -1.58 9.20 71.98 0.66 -0.91 16 26 C 0.11 2.10 5.67 86.22 0.49 2.59 16 27 C -0.09 -3.08 4.93 30.64 0.15 -2.93 16 28 C 0.07 2.41 4.52 86.32 0.39 2.80 16 29 H 0.07 1.81 6.85 -2.39 -0.02 1.79 16 30 H 0.05 1.63 6.45 -2.39 -0.02 1.61 16 31 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 32 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 33 H -0.01 -0.33 6.34 -2.39 -0.02 -0.35 16 34 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 35 H 0.08 2.00 8.00 -2.39 -0.02 1.98 16 36 H 0.06 1.18 6.91 -2.39 -0.02 1.16 16 37 H 0.10 1.73 7.63 -2.39 -0.02 1.71 16 38 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.12 2.19 6.40 -2.38 -0.02 2.17 16 40 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.10 0.97 5.09 -2.38 -0.01 0.95 16 42 H 0.10 0.45 8.14 -2.38 -0.02 0.43 16 43 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 45 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 46 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 47 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 48 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 49 H 0.06 1.51 7.04 -2.39 -0.02 1.49 16 50 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 51 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 52 H 0.04 1.76 7.80 -2.38 -0.02 1.75 16 53 H 0.05 1.50 6.57 -2.39 -0.02 1.49 16 54 H 0.05 2.11 6.20 -2.39 -0.01 2.10 16 Total: -1.00 -75.99 398.90 2.21 -73.78 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: 0.84 Total: 11.41 kcal Atomic # 6 Polarization: -20.14 SS G_CDS: 5.24 Total: -14.90 kcal Atomic # 7 Polarization: -91.33 SS G_CDS: -5.86 Total: -97.19 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: -0.05 Total: -22.71 kcal Atomic # 14 Polarization: 47.58 SS G_CDS: 2.03 Total: 49.61 kcal Total: -75.99 2.21 -73.78 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411175997.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.398 kcal (2) G-P(sol) polarization free energy of solvation -75.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds