Wall clock time and date at job start Tue Mar 31 2020 15:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46756 * 2 1 4 4 C 1.52997 * 109.47584 * 239.99489 * 2 1 3 5 5 C 1.50698 * 109.46744 * 62.46916 * 4 2 1 6 6 H 1.07995 * 120.00318 * 5.00149 * 5 4 2 7 7 C 1.37888 * 119.99825 * 185.00978 * 5 4 2 8 8 N 1.31507 * 119.99622 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99969 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47018 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47063 * 119.99650 * 9 7 5 12 12 H 1.48491 * 109.46949 * 239.99557 * 9 7 5 13 13 N 1.46908 * 109.46861 * 119.99198 * 2 1 3 14 14 C 1.46853 * 110.99513 * 173.49559 * 13 2 1 15 15 C 1.53039 * 109.51852 * 185.84341 * 14 13 2 16 16 C 1.53119 * 109.27829 * 300.82028 * 15 14 13 17 17 C 1.50701 * 109.52446 * 177.55999 * 16 15 14 18 18 O 1.21278 * 120.00361 * 247.14154 * 17 16 15 19 19 N 1.34779 * 119.99462 * 67.14244 * 17 16 15 20 20 C 1.46934 * 120.62596 * 183.14979 * 19 17 16 21 21 C 1.52755 * 109.00879 * 233.58416 * 20 19 17 22 22 C 1.53041 * 109.38607 * 305.58978 * 21 20 19 23 23 C 1.53044 * 109.53647 * 61.24038 * 22 21 20 24 24 H 1.09001 * 109.52370 * 58.59963 * 23 22 21 25 25 C 1.52999 * 109.49789 * 178.68151 * 23 22 21 26 26 C 1.46917 * 120.63349 * 3.43544 * 19 17 16 27 27 C 1.53123 * 109.16094 * 57.65580 * 16 15 14 28 28 C 1.46845 * 111.00100 * 297.70841 * 13 2 1 29 29 H 1.09000 * 109.46848 * 60.00569 * 1 2 3 30 30 H 1.08997 * 109.47279 * 300.00217 * 1 2 3 31 31 H 1.09003 * 109.46526 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47239 * 182.46650 * 4 2 1 33 33 H 1.09000 * 109.46832 * 302.47408 * 4 2 1 34 34 H 0.97003 * 120.00083 * 180.02562 * 8 7 5 35 35 H 1.08997 * 109.46311 * 305.85287 * 14 13 2 36 36 H 1.08995 * 109.45881 * 65.82945 * 14 13 2 37 37 H 1.09001 * 109.50283 * 180.88285 * 15 14 13 38 38 H 1.08998 * 109.53745 * 60.78260 * 15 14 13 39 39 H 1.09001 * 109.57817 * 297.72173 * 16 15 14 40 40 H 1.08999 * 109.58794 * 353.42378 * 20 19 17 41 41 H 1.08995 * 109.58151 * 113.84870 * 20 19 17 42 42 H 1.08994 * 109.56642 * 185.55212 * 21 20 19 43 43 H 1.08999 * 109.38663 * 65.52047 * 21 20 19 44 44 H 1.08991 * 109.46041 * 301.22241 * 22 21 20 45 45 H 1.09002 * 109.45211 * 181.24939 * 22 21 20 46 46 H 1.08999 * 109.46828 * 179.83449 * 25 23 22 47 47 H 1.08995 * 109.47548 * 299.83956 * 25 23 22 48 48 H 1.08998 * 109.46779 * 59.84313 * 25 23 22 49 49 H 1.09000 * 109.58733 * 246.15182 * 26 19 17 50 50 H 1.09001 * 109.58754 * 6.43659 * 26 19 17 51 51 H 1.09004 * 109.50196 * 182.40576 * 27 16 15 52 52 H 1.09004 * 109.53182 * 62.30825 * 27 16 15 53 53 H 1.09002 * 109.45986 * 294.17180 * 28 13 2 54 54 H 1.08994 * 109.46142 * 54.14449 * 28 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.5884 0.0235 -2.4788 6 1 1.0665 0.9637 -2.3794 7 6 1.8413 -0.4957 -3.7310 8 7 2.4771 -1.6404 -3.8520 9 14 1.2808 0.4272 -5.2553 10 1 0.5926 1.6794 -4.8508 11 1 2.4600 0.7589 -6.0947 12 1 0.3437 -0.4233 -6.0321 13 7 2.0196 -0.6924 1.1996 14 6 3.4793 -0.8479 1.1584 15 6 3.9368 -1.6973 2.3464 16 6 3.5142 -1.0131 3.6495 17 6 3.9091 -1.8742 4.8215 18 8 3.0545 -2.3940 5.5073 19 7 5.2121 -2.0666 5.1075 20 6 5.6140 -2.9582 6.2041 21 6 6.5444 -2.1983 7.1476 22 6 7.7135 -1.6171 6.3491 23 6 7.1804 -0.6375 5.3010 24 1 6.6223 0.1574 5.7958 25 6 8.3521 -0.0322 4.5252 26 6 6.2573 -1.3840 4.3329 27 6 1.9953 -0.8193 3.6457 28 6 1.5941 0.0046 2.4201 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 0.5138 0.8899 31 1 -0.3632 -1.0277 0.0005 32 1 3.1292 -0.7597 -1.2272 33 1 1.6410 -1.7354 -1.2715 34 1 2.6554 -2.0055 -4.7328 35 1 3.7661 -1.3395 0.2288 36 1 3.9507 0.1335 1.2107 37 1 5.0218 -1.7995 2.3244 38 1 3.4771 -2.6838 2.2877 39 1 4.0050 -0.0430 3.7285 40 1 4.7300 -3.2865 6.7508 41 1 6.1374 -3.8237 5.7980 42 1 6.9264 -2.8780 7.9093 43 1 5.9925 -1.3892 7.6259 44 1 8.2504 -2.4245 5.8515 45 1 8.3898 -1.0934 7.0247 46 1 7.9717 0.6632 3.7769 47 1 9.0086 0.4989 5.2144 48 1 8.9104 -0.8275 4.0315 49 1 6.8343 -2.1186 3.7711 50 1 5.7975 -0.6758 3.6436 51 1 1.6932 -0.2942 4.5519 52 1 1.5039 -1.7915 3.6075 53 1 2.0744 0.9820 2.4663 54 1 0.5117 0.1322 2.4067 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411175999.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:11 Heat of formation + Delta-G solvation = -74.657478 kcal Electronic energy + Delta-G solvation = -28858.578855 eV Core-core repulsion = 25214.205971 eV Total energy + Delta-G solvation = -3644.372885 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.70652 -39.94066 -38.66647 -36.40984 -34.70930 -34.42908 -33.19464 -31.94201 -31.50843 -28.79581 -27.66836 -27.08634 -25.88093 -25.01540 -23.59550 -23.01395 -21.73775 -20.93148 -20.61068 -19.95201 -18.65771 -18.17700 -17.26896 -16.74458 -16.55412 -16.10538 -15.83096 -15.72368 -15.44951 -15.21343 -14.97713 -14.75507 -14.62068 -14.47320 -14.22040 -14.04867 -13.72059 -13.54968 -13.47198 -13.12941 -13.05772 -12.95789 -12.74002 -12.61618 -12.51653 -12.29933 -12.23002 -12.09960 -12.02454 -11.91848 -11.76483 -11.57248 -11.54093 -11.49729 -11.34581 -11.11678 -10.86539 -10.61669 -10.46401 -9.65070 -9.08754 -8.15708 -6.24314 1.40975 1.42218 1.54337 1.55263 1.96965 2.42644 3.06202 3.18144 3.40910 3.69213 3.75672 3.78899 3.88954 3.95624 4.07336 4.17597 4.20516 4.32174 4.33105 4.37479 4.44406 4.51455 4.53876 4.55932 4.63752 4.65846 4.69771 4.78069 4.81506 4.85973 4.89331 4.91577 4.93720 5.00644 5.04774 5.07760 5.15532 5.16829 5.18154 5.26872 5.27643 5.35776 5.37019 5.46396 5.49870 5.53067 5.58027 5.76593 5.83152 6.17506 6.34641 6.42013 6.43794 6.91788 7.12406 7.43378 8.96480 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.018812 B = 0.002706 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.062041 B =10345.573160 C =11194.948682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.097 3.903 3 H 0.024 0.976 4 C 0.039 3.961 5 C -0.529 4.529 6 H 0.060 0.940 7 C 0.001 3.999 8 N -0.932 5.932 9 Si 0.959 3.041 10 H -0.262 1.262 11 H -0.279 1.279 12 H -0.282 1.282 13 N -0.548 5.548 14 C 0.057 3.943 15 C -0.094 4.094 16 C -0.098 4.098 17 C 0.521 3.479 18 O -0.582 6.582 19 N -0.609 5.609 20 C 0.104 3.896 21 C -0.128 4.128 22 C -0.112 4.112 23 C -0.104 4.104 24 H 0.067 0.933 25 C -0.144 4.144 26 C 0.101 3.899 27 C -0.087 4.087 28 C 0.056 3.944 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.042 0.958 32 H -0.002 1.002 33 H -0.009 1.009 34 H 0.261 0.739 35 H 0.064 0.936 36 H 0.039 0.961 37 H 0.094 0.906 38 H 0.054 0.946 39 H 0.112 0.888 40 H 0.070 0.930 41 H 0.077 0.923 42 H 0.091 0.909 43 H 0.055 0.945 44 H 0.072 0.928 45 H 0.077 0.923 46 H 0.058 0.942 47 H 0.065 0.935 48 H 0.063 0.937 49 H 0.082 0.918 50 H 0.093 0.907 51 H 0.076 0.924 52 H 0.055 0.945 53 H 0.039 0.961 54 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.453 3.014 21.680 25.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.011 4.011 3 H 0.042 0.958 4 C 0.002 3.998 5 C -0.567 4.567 6 H 0.079 0.921 7 C -0.196 4.196 8 N -0.572 5.572 9 Si 0.785 3.215 10 H -0.186 1.186 11 H -0.205 1.205 12 H -0.208 1.208 13 N -0.274 5.274 14 C -0.071 4.071 15 C -0.132 4.132 16 C -0.119 4.119 17 C 0.310 3.690 18 O -0.462 6.462 19 N -0.341 5.341 20 C -0.018 4.018 21 C -0.166 4.166 22 C -0.149 4.149 23 C -0.123 4.123 24 H 0.085 0.915 25 C -0.202 4.202 26 C -0.021 4.021 27 C -0.125 4.125 28 C -0.072 4.072 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.061 0.939 32 H 0.017 0.983 33 H 0.009 0.991 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.057 0.943 37 H 0.112 0.888 38 H 0.073 0.927 39 H 0.129 0.871 40 H 0.088 0.912 41 H 0.095 0.905 42 H 0.109 0.891 43 H 0.073 0.927 44 H 0.091 0.909 45 H 0.095 0.905 46 H 0.077 0.923 47 H 0.084 0.916 48 H 0.082 0.918 49 H 0.100 0.900 50 H 0.111 0.889 51 H 0.095 0.905 52 H 0.074 0.926 53 H 0.057 0.943 54 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 11.863 2.152 21.933 25.028 hybrid contribution -0.032 0.736 -1.136 1.354 sum 11.831 2.887 20.798 24.101 Atomic orbital electron populations 1.21666 0.94282 1.01134 1.00962 1.21515 0.95879 0.94307 0.89395 0.95772 1.19043 0.94656 0.94687 0.91419 1.21609 1.36465 1.06773 0.91864 0.92141 1.25887 0.95432 0.95820 1.02481 1.70108 1.42674 1.20293 1.24163 0.85481 0.78045 0.78886 0.79136 1.18578 1.20520 1.20770 1.61948 1.11760 1.51573 1.02102 1.22064 0.87743 0.98715 0.98574 1.21573 1.01574 0.98665 0.91434 1.21346 0.98398 0.99586 0.92619 1.20902 0.82082 0.80787 0.85213 1.90647 1.50653 1.52017 1.52878 1.48194 1.05393 1.46247 1.34246 1.21602 0.99131 0.92699 0.88338 1.21792 0.96561 1.00300 0.97909 1.21592 0.97073 0.98850 0.97416 1.21488 0.96663 0.97720 0.96435 0.91467 1.21759 0.97114 1.01065 1.00237 1.22186 0.89074 0.96890 0.93957 1.21308 0.93399 1.00705 0.97072 1.22154 1.01245 0.94879 0.88883 0.92753 0.91763 0.93909 0.98345 0.99076 0.92978 0.91750 0.94304 0.88812 0.92695 0.87051 0.91162 0.90494 0.89085 0.92665 0.90940 0.90481 0.92282 0.91569 0.91840 0.90024 0.88872 0.90536 0.92570 0.94331 0.89973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.72 8.82 71.98 0.63 -4.08 16 2 C 0.10 4.01 2.13 44.91 0.10 4.10 16 3 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 4 C 0.04 2.05 4.13 29.85 0.12 2.17 16 5 C -0.53 -29.44 8.29 25.60 0.21 -29.22 16 6 H 0.06 3.24 7.08 -2.91 -0.02 3.22 16 7 C 0.00 0.08 5.46 84.66 0.46 0.54 16 8 N -0.93 -56.38 13.29 21.45 0.28 -56.10 16 9 Si 0.96 44.01 29.54 68.60 2.03 46.03 16 10 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 11 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 12 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 13 N -0.55 -19.68 4.52 -871.10 -3.94 -23.62 16 14 C 0.06 1.86 5.08 86.32 0.44 2.30 16 15 C -0.09 -2.49 5.02 30.65 0.15 -2.34 16 16 C -0.10 -2.38 1.73 -11.46 -0.02 -2.40 16 17 C 0.52 13.68 7.00 87.66 0.61 14.30 16 18 O -0.58 -19.78 15.35 -3.02 -0.05 -19.82 16 19 N -0.61 -12.14 2.98 -819.75 -2.44 -14.58 16 20 C 0.10 1.84 6.41 86.22 0.55 2.39 16 21 C -0.13 -1.59 6.06 30.53 0.19 -1.40 16 22 C -0.11 -1.11 5.17 30.62 0.16 -0.95 16 23 C -0.10 -1.18 2.87 -10.71 -0.03 -1.21 16 24 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 25 C -0.14 -1.32 9.20 71.98 0.66 -0.66 16 26 C 0.10 1.45 4.33 86.37 0.37 1.83 16 27 C -0.09 -2.37 4.74 30.65 0.15 -2.22 16 28 C 0.06 1.62 5.26 86.33 0.45 2.07 16 29 H 0.05 2.19 6.88 -2.39 -0.02 2.17 16 30 H 0.06 2.02 6.33 -2.39 -0.02 2.01 16 31 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.00 -0.09 6.05 -2.39 -0.01 -0.10 16 33 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 34 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 35 H 0.06 2.52 5.81 -2.39 -0.01 2.50 16 36 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.09 1.97 5.93 -2.39 -0.01 1.96 16 38 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.11 2.21 7.17 -2.39 -0.02 2.20 16 40 H 0.07 1.55 7.00 -2.39 -0.02 1.54 16 41 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.09 0.84 8.14 -2.39 -0.02 0.83 16 43 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 45 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 46 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 47 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 48 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 49 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 50 H 0.09 1.33 4.90 -2.39 -0.01 1.32 16 51 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 52 H 0.06 1.81 7.95 -2.38 -0.02 1.79 16 53 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 54 H 0.08 2.32 6.08 -2.39 -0.01 2.30 16 Total: -1.00 -68.99 396.60 1.94 -67.04 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: 0.85 Total: 15.83 kcal Atomic # 6 Polarization: -20.00 SS G_CDS: 5.22 Total: -14.79 kcal Atomic # 7 Polarization: -88.19 SS G_CDS: -6.10 Total: -94.29 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: -0.05 Total: -19.82 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Total: -68.99 1.94 -67.04 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411175999.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.614 kcal (2) G-P(sol) polarization free energy of solvation -68.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds