Wall clock time and date at job start Tue Mar 31 2020 15:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.47242 * 2 1 4 4 C 1.52995 * 109.46978 * 239.99495 * 2 1 3 5 5 C 1.50704 * 109.46918 * 175.15684 * 4 2 1 6 6 H 1.07997 * 119.99749 * 0.02562 * 5 4 2 7 7 C 1.37874 * 119.99964 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00388 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 120.00153 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47299 * 90.00144 * 9 7 5 11 11 H 1.48493 * 109.47427 * 210.00066 * 9 7 5 12 12 H 1.48499 * 109.47219 * 330.00200 * 9 7 5 13 13 N 1.46906 * 109.46625 * 119.99878 * 2 1 3 14 14 C 1.46845 * 111.00148 * 52.87762 * 13 2 1 15 15 C 1.53044 * 109.51884 * 174.15777 * 14 13 2 16 16 C 1.53117 * 109.27800 * 59.18016 * 15 14 13 17 17 C 1.50699 * 109.52210 * 182.43484 * 16 15 14 18 18 O 1.21283 * 119.99724 * 96.63672 * 17 16 15 19 19 N 1.34779 * 120.00486 * 276.64612 * 17 16 15 20 20 C 1.46930 * 120.62483 * 354.83330 * 19 17 16 21 21 C 1.53190 * 108.77103 * 126.37231 * 20 19 17 22 22 C 1.53048 * 109.31070 * 54.63577 * 21 20 19 23 23 C 1.53036 * 109.53810 * 298.63109 * 22 21 20 24 24 H 1.09006 * 109.49891 * 301.38475 * 23 22 21 25 25 C 1.52997 * 109.49704 * 181.31957 * 23 22 21 26 26 C 1.46921 * 120.63311 * 174.55849 * 19 17 16 27 27 C 1.53119 * 109.16127 * 302.34113 * 16 15 14 28 28 C 1.46843 * 110.99781 * 288.66105 * 13 2 1 29 29 H 1.08997 * 109.46844 * 60.00464 * 1 2 3 30 30 H 1.08997 * 109.46776 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46686 * 300.00442 * 1 2 3 32 32 H 1.08999 * 109.47375 * 295.15739 * 4 2 1 33 33 H 1.08997 * 109.47049 * 55.15861 * 4 2 1 34 34 H 0.96994 * 120.00493 * 179.97438 * 8 7 5 35 35 H 1.08994 * 109.46297 * 54.14215 * 14 13 2 36 36 H 1.08997 * 109.46188 * 294.17345 * 14 13 2 37 37 H 1.08996 * 109.50487 * 299.23583 * 15 14 13 38 38 H 1.09006 * 109.49642 * 179.11943 * 15 14 13 39 39 H 1.09000 * 109.52358 * 62.25263 * 16 15 14 40 40 H 1.08997 * 109.58626 * 246.15896 * 20 19 17 41 41 H 1.08998 * 109.58841 * 6.58942 * 20 19 17 42 42 H 1.09001 * 109.49796 * 174.58349 * 21 20 19 43 43 H 1.08997 * 109.50209 * 294.68336 * 21 20 19 44 44 H 1.08994 * 109.46366 * 58.65371 * 22 21 20 45 45 H 1.09006 * 109.45728 * 178.62838 * 22 21 20 46 46 H 1.09001 * 109.47477 * 60.00302 * 25 23 22 47 47 H 1.09000 * 109.47118 * 179.97438 * 25 23 22 48 48 H 1.09001 * 109.47279 * 299.99735 * 25 23 22 49 49 H 1.08999 * 109.58569 * 353.41818 * 26 19 17 50 50 H 1.09007 * 109.58384 * 113.83751 * 26 19 17 51 51 H 1.08994 * 109.50157 * 177.59696 * 27 16 15 52 52 H 1.09001 * 109.50127 * 297.67640 * 27 16 15 53 53 H 1.09002 * 109.45987 * 65.83352 * 28 13 2 54 54 H 1.08998 * 109.45933 * 305.85267 * 28 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5423 -0.6183 -1.3106 6 1 4.0795 -0.0914 -0.5359 7 6 4.2308 -1.1967 -2.3558 8 7 5.5417 -1.1064 -2.4097 9 14 3.3016 -2.1086 -3.6953 10 1 2.9434 -1.1618 -4.7818 11 1 4.1586 -3.1901 -4.2439 12 1 2.0640 -2.6990 -3.1252 13 7 2.0196 -0.6925 1.1995 14 6 1.4150 -2.0251 1.3215 15 6 2.0539 -2.7711 2.4952 16 6 1.8348 -1.9709 3.7822 17 6 2.5132 -2.6704 4.9317 18 8 3.6215 -2.3250 5.2828 19 7 1.8884 -3.6800 5.5696 20 6 0.5036 -4.0359 5.2314 21 6 0.4451 -5.5309 4.9024 22 6 1.0324 -6.3291 6.0688 23 6 2.4975 -5.9362 6.2716 24 1 3.0562 -6.1296 5.3558 25 6 3.0929 -6.7583 7.4163 26 6 2.5811 -4.4494 6.6121 27 6 2.4312 -0.5710 3.6113 28 6 1.7814 0.1112 2.4052 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5139 0.8900 32 1 1.7493 -1.7710 -1.2068 33 1 1.6076 -0.2601 -2.1370 34 1 6.0261 -1.5136 -3.1448 35 1 1.5815 -2.5851 0.4014 36 1 0.3438 -1.9233 1.4957 37 1 3.1228 -2.8854 2.3153 38 1 1.5938 -3.7542 2.5952 39 1 0.7666 -1.8898 3.9833 40 1 -0.1461 -3.8229 6.0803 41 1 0.1788 -3.4584 4.3660 42 1 -0.5915 -5.8282 4.7436 43 1 1.0230 -5.7277 3.9994 44 1 0.4695 -6.1130 6.9767 45 1 0.9697 -7.3947 5.8476 46 1 3.0320 -7.8189 7.1720 47 1 4.1365 -6.4784 7.5601 48 1 2.5347 -6.5637 8.3321 49 1 3.6266 -4.1446 6.6573 50 1 2.1043 -4.2707 7.5759 51 1 2.2408 0.0176 4.5086 52 1 3.5062 -0.6507 3.4495 53 1 0.7085 0.2029 2.5743 54 1 2.2142 1.1027 2.2720 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411176001.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:15 Heat of formation + Delta-G solvation = -71.513529 kcal Electronic energy + Delta-G solvation = -29235.370459 eV Core-core repulsion = 25591.133906 eV Total energy + Delta-G solvation = -3644.236553 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.67785 -40.05357 -38.65928 -36.28707 -34.90169 -34.35142 -32.75606 -31.99703 -31.44978 -29.49784 -27.96044 -26.87651 -25.46673 -24.50410 -24.06438 -23.22483 -21.89146 -21.02362 -20.25557 -19.64023 -18.75552 -18.23105 -17.34004 -16.70160 -16.45857 -16.21113 -15.84311 -15.63874 -15.36911 -15.26667 -15.01419 -14.84599 -14.54584 -14.38235 -14.27226 -14.01973 -13.80045 -13.63820 -13.49520 -13.36506 -13.05532 -12.89865 -12.85665 -12.62121 -12.55244 -12.48231 -12.09322 -12.01657 -11.94540 -11.79645 -11.69072 -11.58784 -11.50303 -11.37055 -11.30059 -11.29108 -10.98550 -10.65975 -10.58190 -9.64161 -8.79754 -8.15530 -6.14783 1.37195 1.39512 1.50344 1.54778 1.98902 2.43260 3.09445 3.24792 3.44442 3.72774 3.79304 3.82179 3.88963 3.93198 4.08883 4.15737 4.17631 4.32870 4.35118 4.40219 4.42915 4.46781 4.53277 4.58125 4.63001 4.65057 4.69852 4.75452 4.80862 4.83725 4.87024 4.88055 4.92545 4.93493 5.02471 5.12789 5.14389 5.17185 5.19797 5.21581 5.23870 5.27455 5.30426 5.32974 5.42659 5.49086 5.59968 5.61390 5.78208 6.37149 6.41080 6.52927 6.59568 6.94478 7.15143 7.45718 9.02530 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.014909 B = 0.003212 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.552591 B = 8714.059762 C = 9193.394382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.099 3.901 3 H 0.056 0.944 4 C -0.004 4.004 5 C -0.489 4.489 6 H 0.028 0.972 7 C -0.008 4.008 8 N -0.963 5.963 9 Si 0.947 3.053 10 H -0.269 1.269 11 H -0.292 1.292 12 H -0.243 1.243 13 N -0.547 5.547 14 C 0.063 3.937 15 C -0.094 4.094 16 C -0.093 4.093 17 C 0.516 3.484 18 O -0.588 6.588 19 N -0.610 5.610 20 C 0.097 3.903 21 C -0.136 4.136 22 C -0.110 4.110 23 C -0.105 4.105 24 H 0.051 0.949 25 C -0.141 4.141 26 C 0.113 3.887 27 C -0.093 4.093 28 C 0.064 3.936 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.022 0.978 33 H 0.020 0.980 34 H 0.259 0.741 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.034 0.966 38 H 0.091 0.909 39 H 0.125 0.875 40 H 0.091 0.909 41 H 0.098 0.902 42 H 0.101 0.899 43 H 0.054 0.946 44 H 0.078 0.922 45 H 0.074 0.926 46 H 0.067 0.933 47 H 0.047 0.953 48 H 0.069 0.931 49 H 0.059 0.941 50 H 0.082 0.918 51 H 0.077 0.923 52 H 0.039 0.961 53 H 0.057 0.943 54 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.550 -10.502 19.657 29.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.009 4.009 3 H 0.074 0.926 4 C -0.041 4.041 5 C -0.527 4.527 6 H 0.047 0.953 7 C -0.202 4.202 8 N -0.606 5.606 9 Si 0.772 3.228 10 H -0.194 1.194 11 H -0.219 1.219 12 H -0.167 1.167 13 N -0.272 5.272 14 C -0.064 4.064 15 C -0.132 4.132 16 C -0.114 4.114 17 C 0.306 3.694 18 O -0.469 6.469 19 N -0.342 5.342 20 C -0.025 4.025 21 C -0.174 4.174 22 C -0.147 4.147 23 C -0.125 4.125 24 H 0.069 0.931 25 C -0.199 4.199 26 C -0.009 4.009 27 C -0.132 4.132 28 C -0.064 4.064 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.040 0.960 33 H 0.038 0.962 34 H 0.068 0.932 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.053 0.947 38 H 0.109 0.891 39 H 0.143 0.857 40 H 0.109 0.891 41 H 0.116 0.884 42 H 0.119 0.881 43 H 0.073 0.927 44 H 0.097 0.903 45 H 0.092 0.908 46 H 0.086 0.914 47 H 0.067 0.933 48 H 0.088 0.912 49 H 0.078 0.922 50 H 0.100 0.900 51 H 0.096 0.904 52 H 0.058 0.942 53 H 0.075 0.925 54 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -18.341 -10.430 19.713 28.875 hybrid contribution 0.311 -0.062 -0.833 0.891 sum -18.030 -10.491 18.880 28.135 Atomic orbital electron populations 1.22404 0.95840 1.02500 1.02534 1.21464 0.92790 0.96783 0.89866 0.92578 1.19638 0.94196 0.96208 0.94107 1.21327 0.92313 1.32341 1.06733 0.95335 1.26026 0.95508 0.97719 1.00989 1.70110 1.08691 1.48158 1.33596 0.85704 0.79320 0.78554 0.79254 1.19433 1.21880 1.16671 1.61799 1.60108 1.03133 1.02113 1.22011 0.96616 0.89974 0.97804 1.21449 1.00708 0.98622 0.92467 1.21354 1.01965 0.95613 0.92504 1.21059 0.85338 0.79863 0.83148 1.90667 1.22432 1.66165 1.67591 1.48246 1.15425 1.32397 1.38125 1.22133 0.80575 0.96987 1.02766 1.21958 1.02978 0.93929 0.98504 1.21577 0.93749 1.00333 0.99089 1.21400 0.98154 0.93647 0.99260 0.93050 1.21738 1.00506 0.99910 0.97759 1.21606 0.97653 0.91019 0.90646 1.21359 0.99780 0.94351 0.97689 1.22021 0.98919 0.96352 0.89116 0.91859 0.91727 0.91405 0.95971 0.96175 0.93185 0.92006 0.92016 0.94679 0.89056 0.85738 0.89078 0.88367 0.88065 0.92715 0.90291 0.90775 0.91432 0.93335 0.91171 0.92198 0.89976 0.90428 0.94184 0.92481 0.91906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.71 8.43 71.98 0.61 -4.10 16 2 C 0.10 3.73 2.25 44.91 0.10 3.83 16 3 H 0.06 2.28 7.96 -2.39 -0.02 2.26 16 4 C 0.00 -0.19 3.46 29.85 0.10 -0.08 16 5 C -0.49 -28.86 9.39 25.60 0.24 -28.62 16 6 H 0.03 1.91 7.99 -2.91 -0.02 1.89 16 7 C -0.01 -0.50 5.47 84.65 0.46 -0.04 16 8 N -0.96 -63.53 13.96 21.45 0.30 -63.24 16 9 Si 0.95 45.49 27.47 68.60 1.88 47.37 16 10 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 11 H -0.29 -14.04 7.11 99.48 0.71 -13.34 16 12 H -0.24 -10.58 6.54 99.48 0.65 -9.93 16 13 N -0.55 -20.05 4.30 -871.10 -3.75 -23.80 16 14 C 0.06 1.94 4.51 86.33 0.39 2.33 16 15 C -0.09 -2.69 5.24 30.65 0.16 -2.53 16 16 C -0.09 -2.35 1.74 -11.46 -0.02 -2.37 16 17 C 0.52 14.77 6.82 87.66 0.60 15.37 16 18 O -0.59 -22.76 15.46 -3.04 -0.05 -22.81 16 19 N -0.61 -12.59 2.98 -819.75 -2.44 -15.04 16 20 C 0.10 1.18 6.16 86.36 0.53 1.71 16 21 C -0.14 -1.43 6.08 30.67 0.19 -1.24 16 22 C -0.11 -1.15 5.17 30.62 0.16 -0.99 16 23 C -0.11 -1.62 2.86 -10.86 -0.03 -1.66 16 24 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 25 C -0.14 -1.74 9.20 71.98 0.66 -1.08 16 26 C 0.11 2.21 5.67 86.22 0.49 2.70 16 27 C -0.09 -2.82 4.93 30.65 0.15 -2.67 16 28 C 0.06 1.90 5.15 86.33 0.44 2.34 16 29 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.06 1.61 6.45 -2.39 -0.02 1.60 16 31 H 0.07 1.53 6.86 -2.39 -0.02 1.52 16 32 H 0.02 1.00 5.34 -2.39 -0.01 0.99 16 33 H 0.02 0.90 7.57 -2.39 -0.02 0.88 16 34 H 0.26 16.08 8.31 -92.71 -0.77 15.30 16 35 H 0.06 2.19 6.18 -2.39 -0.01 2.18 16 36 H 0.06 1.45 6.57 -2.39 -0.02 1.44 16 37 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.09 2.05 7.72 -2.38 -0.02 2.03 16 39 H 0.12 2.16 6.36 -2.39 -0.02 2.15 16 40 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.10 1.05 5.12 -2.39 -0.01 1.04 16 42 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 43 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 45 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 46 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 47 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 48 H 0.07 0.67 8.14 -2.39 -0.02 0.66 16 49 H 0.06 1.55 7.04 -2.39 -0.02 1.54 16 50 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 51 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 52 H 0.04 1.57 7.80 -2.39 -0.02 1.55 16 53 H 0.06 1.34 6.92 -2.39 -0.02 1.32 16 54 H 0.06 1.99 8.00 -2.39 -0.02 1.97 16 Total: -1.00 -79.24 395.50 1.97 -77.27 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: 0.79 Total: 17.35 kcal Atomic # 6 Polarization: -22.34 SS G_CDS: 5.24 Total: -17.10 kcal Atomic # 7 Polarization: -96.18 SS G_CDS: -5.89 Total: -102.08 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: -0.05 Total: -22.81 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 1.88 Total: 47.37 kcal Total: -79.24 1.97 -77.27 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411176001.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.752 kcal (2) G-P(sol) polarization free energy of solvation -79.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds