Wall clock time and date at job start Tue Mar 31 2020 13:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50693 * 120.00202 * 2 1 4 4 N 1.46909 * 109.47224 * 124.63057 * 3 2 1 5 5 C 1.46896 * 111.00286 * 199.67013 * 4 3 2 6 6 C 1.50701 * 109.47226 * 66.04120 * 5 4 3 7 7 H 1.08007 * 119.99994 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00287 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99549 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00174 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46917 * 60.00539 * 10 8 6 12 12 H 1.48498 * 109.47091 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47366 * 300.00612 * 10 8 6 14 14 C 1.46897 * 110.99964 * 75.71138 * 4 3 2 15 15 C 1.50700 * 109.47261 * 199.97814 * 14 4 3 16 16 O 1.21282 * 119.99683 * 355.78834 * 15 14 4 17 17 N 1.34773 * 120.00251 * 175.79684 * 15 14 4 18 18 C 1.46498 * 119.99961 * 180.02562 * 17 15 14 19 19 C 1.53001 * 109.46979 * 179.97438 * 18 17 15 20 20 C 1.52999 * 109.47245 * 179.97438 * 19 18 17 21 21 C 1.53001 * 109.47245 * 180.02562 * 20 19 18 22 22 C 1.52999 * 109.47215 * 64.99923 * 21 20 19 23 23 C 1.53001 * 109.47215 * 180.02562 * 22 21 20 24 24 C 1.52997 * 109.46877 * 299.99707 * 23 22 21 25 25 C 1.52999 * 109.46959 * 60.00136 * 24 23 22 26 26 C 1.52997 * 109.46877 * 184.99629 * 21 20 19 27 27 H 1.08003 * 119.99979 * 359.97438 * 1 2 3 28 28 H 1.07993 * 120.00026 * 179.97438 * 1 2 3 29 29 H 1.08003 * 119.99979 * 180.02562 * 2 1 3 30 30 H 1.09002 * 109.47471 * 4.63106 * 3 2 1 31 31 H 1.09001 * 109.47706 * 244.62415 * 3 2 1 32 32 H 1.08987 * 109.47239 * 186.04374 * 5 4 3 33 33 H 1.09004 * 109.46934 * 306.04792 * 5 4 3 34 34 H 0.97003 * 119.99587 * 179.97438 * 9 8 6 35 35 H 1.09000 * 109.47030 * 79.97876 * 14 4 3 36 36 H 1.08998 * 109.47540 * 319.98237 * 14 4 3 37 37 H 0.97007 * 120.00007 * 359.97438 * 17 15 14 38 38 H 1.09000 * 109.47215 * 59.99611 * 18 17 15 39 39 H 1.09002 * 109.47195 * 299.99076 * 18 17 15 40 40 H 1.08997 * 109.47341 * 59.99535 * 19 18 17 41 41 H 1.09002 * 109.47304 * 299.99728 * 19 18 17 42 42 H 1.08997 * 109.47237 * 59.99586 * 20 19 18 43 43 H 1.09002 * 109.46841 * 300.00126 * 20 19 18 44 44 H 1.09000 * 109.47316 * 304.99965 * 21 20 19 45 45 H 1.09004 * 109.47321 * 300.00289 * 22 21 20 46 46 H 1.09000 * 109.46944 * 59.99815 * 22 21 20 47 47 H 1.09001 * 109.47090 * 179.97438 * 23 22 21 48 48 H 1.09001 * 109.46792 * 60.00090 * 23 22 21 49 49 H 1.09001 * 109.47723 * 299.99814 * 24 23 22 50 50 H 1.09006 * 109.46977 * 179.97438 * 24 23 22 51 51 H 1.09004 * 109.47321 * 179.97438 * 25 24 23 52 52 H 1.09000 * 109.47421 * 60.00077 * 25 24 23 53 53 H 1.09001 * 109.47723 * 299.99814 * 26 21 20 54 54 H 1.09001 * 109.47021 * 60.00251 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9900 1.3355 1.1397 5 6 3.3901 2.7131 1.4562 6 6 2.1919 3.4839 1.9475 7 1 1.2295 2.9987 2.0179 8 6 2.3244 4.8080 2.3080 9 7 3.4964 5.3986 2.2227 10 14 0.8390 5.7636 2.9162 11 1 0.2969 5.1124 4.1358 12 1 1.2434 7.1562 3.2363 13 1 -0.2043 5.7821 1.8596 14 6 4.1650 0.4913 0.8857 15 6 4.8289 0.1475 2.1941 16 8 4.4146 0.6263 3.2285 17 7 5.8832 -0.6919 2.2148 18 6 6.5282 -1.0264 3.4869 19 6 7.6886 -1.9906 3.2322 20 6 8.3627 -2.3395 4.5607 21 6 9.5235 -3.3032 4.3059 22 6 10.6000 -2.5975 3.4789 23 6 11.7605 -3.5614 3.2236 24 6 12.3557 -4.0083 4.5603 25 6 11.2791 -4.7139 5.3874 26 6 10.1185 -3.7495 5.6429 27 1 -0.5400 0.9353 0.0004 28 1 -0.5400 -0.9352 -0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3582 2.1319 0.0830 31 1 2.6266 1.3995 -0.9285 32 1 4.1563 2.6999 2.2312 33 1 3.7872 3.1910 0.5606 34 1 3.5895 6.3303 2.4760 35 1 4.8691 1.0299 0.2514 36 1 3.8526 -0.4251 0.3849 37 1 6.2144 -1.0750 1.3875 38 1 5.8025 -1.4987 4.1491 39 1 6.9069 -0.1166 3.9526 40 1 8.4143 -1.5188 2.5698 41 1 7.3096 -2.9004 2.7667 42 1 7.6371 -2.8112 5.2234 43 1 8.7417 -1.4295 5.0258 44 1 9.1596 -4.1744 3.7611 45 1 10.1761 -2.2794 2.5263 46 1 10.9638 -1.7263 4.0236 47 1 12.5272 -3.0588 2.6340 48 1 11.3963 -4.4322 2.6786 49 1 12.7199 -3.1374 5.1053 50 1 13.1822 -4.6953 4.3784 51 1 11.7032 -5.0328 6.3396 52 1 10.9150 -5.5849 4.8425 53 1 10.4824 -2.8784 6.1877 54 1 9.3515 -4.2523 6.2321 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000428837452.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:16 Heat of formation + Delta-G solvation = -70.738325 kcal Electronic energy + Delta-G solvation = -26975.032108 eV Core-core repulsion = 23330.829170 eV Total energy + Delta-G solvation = -3644.202938 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.76431 -39.73238 -38.30116 -36.59096 -34.96039 -34.37881 -33.89977 -31.63492 -31.20043 -29.75547 -28.27739 -26.46071 -25.55707 -23.76327 -23.01759 -22.52288 -21.79558 -21.07553 -20.56130 -20.38175 -18.57537 -18.07230 -17.08034 -16.94001 -16.62825 -16.23438 -16.05815 -15.89638 -15.50769 -15.23904 -15.06110 -14.86864 -14.71447 -14.63944 -14.08906 -13.90361 -13.88414 -13.50073 -13.35485 -13.17563 -12.98924 -12.83428 -12.76250 -12.56732 -12.50404 -12.38633 -12.24193 -12.01831 -11.94804 -11.84869 -11.73840 -11.55080 -11.28290 -11.27167 -10.91497 -10.77363 -10.64898 -10.54866 -10.21859 -10.01116 -8.95767 -8.19132 -6.27275 1.37202 1.42509 1.47920 1.50101 1.79499 2.23384 2.40808 3.13332 3.47025 3.71165 3.81868 3.87305 3.99209 4.08719 4.09225 4.14596 4.27462 4.30716 4.35313 4.39825 4.43923 4.50777 4.63317 4.64224 4.66029 4.67008 4.69625 4.75047 4.83665 4.88050 4.93223 5.00651 5.04967 5.11054 5.17517 5.20883 5.22662 5.30656 5.31114 5.31839 5.38673 5.40167 5.46148 5.55276 5.58214 5.64302 5.67393 5.78067 6.03983 6.07800 6.37210 6.50965 6.77123 6.86852 7.40239 7.46799 8.92308 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.015885 B = 0.002056 C = 0.001909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.231899 B =13613.886432 C =14663.056603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.145 4.145 3 C 0.084 3.916 4 N -0.532 5.532 5 C 0.215 3.785 6 C -0.517 4.517 7 H 0.058 0.942 8 C -0.003 4.003 9 N -0.936 5.936 10 Si 0.969 3.031 11 H -0.275 1.275 12 H -0.281 1.281 13 H -0.262 1.262 14 C 0.035 3.965 15 C 0.505 3.495 16 O -0.566 6.566 17 N -0.721 5.721 18 C 0.121 3.879 19 C -0.115 4.115 20 C -0.112 4.112 21 C -0.079 4.079 22 C -0.118 4.118 23 C -0.119 4.119 24 C -0.121 4.121 25 C -0.118 4.118 26 C -0.117 4.117 27 H 0.085 0.915 28 H 0.120 0.880 29 H 0.124 0.876 30 H 0.064 0.936 31 H 0.044 0.956 32 H 0.003 0.997 33 H -0.036 1.036 34 H 0.263 0.737 35 H 0.066 0.934 36 H 0.131 0.869 37 H 0.416 0.584 38 H 0.051 0.949 39 H 0.040 0.960 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.064 0.936 43 H 0.056 0.944 44 H 0.075 0.925 45 H 0.067 0.933 46 H 0.053 0.947 47 H 0.061 0.939 48 H 0.064 0.936 49 H 0.055 0.945 50 H 0.065 0.935 51 H 0.062 0.938 52 H 0.064 0.936 53 H 0.055 0.945 54 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.817 -23.554 -1.771 27.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.164 4.164 3 C -0.043 4.043 4 N -0.256 5.256 5 C 0.089 3.911 6 C -0.555 4.555 7 H 0.076 0.924 8 C -0.200 4.200 9 N -0.577 5.577 10 Si 0.793 3.207 11 H -0.200 1.200 12 H -0.206 1.206 13 H -0.186 1.186 14 C -0.096 4.096 15 C 0.291 3.709 16 O -0.443 6.443 17 N -0.376 5.376 18 C -0.003 4.003 19 C -0.152 4.152 20 C -0.150 4.150 21 C -0.097 4.097 22 C -0.155 4.155 23 C -0.157 4.157 24 C -0.159 4.159 25 C -0.156 4.156 26 C -0.154 4.154 27 H 0.104 0.896 28 H 0.138 0.862 29 H 0.141 0.859 30 H 0.082 0.918 31 H 0.062 0.938 32 H 0.021 0.979 33 H -0.019 1.019 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.149 0.851 37 H 0.252 0.748 38 H 0.069 0.931 39 H 0.058 0.942 40 H 0.098 0.902 41 H 0.103 0.897 42 H 0.083 0.917 43 H 0.075 0.925 44 H 0.094 0.906 45 H 0.086 0.914 46 H 0.072 0.928 47 H 0.080 0.920 48 H 0.083 0.917 49 H 0.074 0.926 50 H 0.083 0.917 51 H 0.081 0.919 52 H 0.082 0.918 53 H 0.074 0.926 54 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 14.369 -23.218 -0.587 27.311 hybrid contribution 0.104 1.292 -0.359 1.345 sum 14.474 -21.927 -0.946 26.290 Atomic orbital electron populations 1.23928 0.95755 1.02261 1.00661 1.22903 0.96292 0.97461 0.99711 1.21198 0.95382 0.96863 0.90844 1.61670 1.14095 1.11711 1.38137 1.19332 0.95517 0.83386 0.92845 1.21394 0.95785 0.95402 1.42938 0.92396 1.25930 0.99221 0.98856 0.96022 1.70090 1.25135 1.12514 1.49927 0.85453 0.79123 0.77127 0.79010 1.20018 1.20601 1.18622 1.22056 0.93533 1.00395 0.93604 1.21105 0.80119 0.78088 0.91564 1.90736 1.64352 1.52772 1.36428 1.45832 1.32287 1.48321 1.11180 1.21330 0.95020 0.98312 0.85668 1.21747 0.95571 0.98843 0.99079 1.21541 0.97366 0.99516 0.96571 1.21098 0.94336 0.97922 0.96387 1.21660 0.95713 0.98087 1.00066 1.21534 0.97622 0.99334 0.97180 1.21553 0.97950 1.00162 0.96219 1.21534 0.95811 0.98213 1.00019 1.21606 0.97815 0.99169 0.96835 0.89616 0.86188 0.85860 0.91762 0.93768 0.97910 1.01867 0.92828 0.91620 0.85128 0.74751 0.93075 0.94201 0.90220 0.89669 0.91726 0.92539 0.90614 0.91413 0.92838 0.91998 0.91697 0.92595 0.91660 0.91879 0.91756 0.92635 0.91914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.29 14.32 67.78 0.97 -4.32 16 2 C -0.15 -4.43 9.32 25.65 0.24 -4.19 16 3 C 0.08 3.25 5.24 85.55 0.45 3.70 16 4 N -0.53 -24.12 4.00 -909.96 -3.64 -27.76 16 5 C 0.22 12.29 4.33 85.56 0.37 12.66 16 6 C -0.52 -31.48 8.23 25.60 0.21 -31.27 16 7 H 0.06 3.49 7.31 -2.91 -0.02 3.46 16 8 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 9 N -0.94 -59.61 13.29 21.45 0.28 -59.33 16 10 Si 0.97 47.13 29.54 68.60 2.03 49.16 16 11 H -0.27 -13.24 7.11 99.48 0.71 -12.53 16 12 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 13 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 14 C 0.04 1.23 5.30 85.56 0.45 1.68 16 15 C 0.50 19.03 7.56 87.66 0.66 19.69 16 16 O -0.57 -28.76 15.06 -3.04 -0.05 -28.80 16 17 N -0.72 -18.64 5.56 -463.06 -2.57 -21.21 16 18 C 0.12 2.96 5.67 86.38 0.49 3.45 16 19 C -0.11 -1.73 5.08 30.59 0.16 -1.58 16 20 C -0.11 -1.66 4.68 30.59 0.14 -1.51 16 21 C -0.08 -0.97 2.19 -10.79 -0.02 -1.00 16 22 C -0.12 -1.46 4.96 30.59 0.15 -1.31 16 23 C -0.12 -1.31 5.92 30.59 0.18 -1.13 16 24 C -0.12 -1.32 5.92 30.59 0.18 -1.14 16 25 C -0.12 -1.29 5.92 30.61 0.18 -1.10 16 26 C -0.12 -1.44 5.21 30.61 0.16 -1.28 16 27 H 0.09 2.58 7.84 -2.91 -0.02 2.56 16 28 H 0.12 2.64 8.06 -2.91 -0.02 2.62 16 29 H 0.12 3.09 7.28 -2.91 -0.02 3.07 16 30 H 0.06 2.85 6.23 -2.39 -0.01 2.84 16 31 H 0.04 1.55 8.00 -2.39 -0.02 1.53 16 32 H 0.00 0.18 6.60 -2.39 -0.02 0.17 16 33 H -0.04 -2.16 8.12 -2.39 -0.02 -2.18 16 34 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 35 H 0.07 2.16 8.00 -2.39 -0.02 2.14 16 36 H 0.13 3.29 6.81 -2.39 -0.02 3.28 16 37 H 0.42 7.10 8.47 -92.70 -0.79 6.32 16 38 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.08 1.09 6.56 -2.39 -0.02 1.08 16 41 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.07 0.80 6.56 -2.39 -0.02 0.78 16 46 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 47 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 48 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 49 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 50 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 51 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 52 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 53 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 54 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -79.19 420.37 1.54 -77.65 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: 0.05 Total: 18.66 kcal Atomic # 6 Polarization: -13.81 SS G_CDS: 5.44 Total: -8.38 kcal Atomic # 7 Polarization: -102.36 SS G_CDS: -5.93 Total: -108.29 kcal Atomic # 8 Polarization: -28.76 SS G_CDS: -0.05 Total: -28.80 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 2.03 Total: 49.16 kcal Total: -79.19 1.54 -77.65 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428837452.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.914 kcal (2) G-P(sol) polarization free energy of solvation -79.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds