Wall clock time and date at job start Tue Mar 31 2020 15:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50704 * 119.99757 * 2 1 4 4 N 1.46897 * 109.47211 * 125.84078 * 3 2 1 5 5 C 1.46896 * 111.00208 * 283.20012 * 4 3 2 6 6 C 1.50708 * 109.47020 * 75.79637 * 5 4 3 7 7 H 1.07994 * 119.99757 * 2.27992 * 6 5 4 8 8 C 1.37877 * 119.99880 * 182.28478 * 6 5 4 9 9 N 1.31512 * 119.99941 * 180.02562 * 8 6 5 10 10 Si 1.86796 * 120.00015 * 359.97438 * 8 6 5 11 11 H 1.48505 * 109.46902 * 90.00422 * 10 8 6 12 12 H 1.48507 * 109.47194 * 210.00231 * 10 8 6 13 13 H 1.48503 * 109.47415 * 330.00513 * 10 8 6 14 14 C 1.46902 * 110.99960 * 159.24554 * 4 3 2 15 15 H 1.08999 * 109.47054 * 171.15074 * 14 4 3 16 16 C 1.53001 * 109.46948 * 51.14939 * 14 4 3 17 17 C 1.50705 * 109.47308 * 291.14755 * 14 4 3 18 18 O 1.21281 * 119.99631 * 7.60816 * 17 14 4 19 19 N 1.34771 * 120.00117 * 187.60282 * 17 14 4 20 20 C 1.46496 * 120.00117 * 179.97438 * 19 17 14 21 21 H 1.09006 * 109.46976 * 35.00450 * 20 19 17 22 22 C 1.53001 * 109.47488 * 275.00574 * 20 19 17 23 23 C 1.52991 * 109.47344 * 180.02562 * 22 20 19 24 24 C 1.53001 * 109.47309 * 59.99545 * 23 22 20 25 25 C 1.52993 * 109.47242 * 300.00046 * 24 23 22 26 26 H 1.08991 * 109.47658 * 300.00048 * 25 24 23 27 27 C 1.52999 * 109.47076 * 179.97438 * 25 24 23 28 28 C 1.53001 * 109.47199 * 155.00098 * 20 19 17 29 29 H 1.09001 * 109.47390 * 300.00193 * 28 20 19 30 30 C 1.53002 * 109.46941 * 60.00085 * 28 20 19 31 31 H 1.08003 * 120.00179 * 179.97438 * 1 2 3 32 32 H 1.08001 * 120.00379 * 0.02562 * 1 2 3 33 33 H 1.07996 * 120.00029 * 179.97438 * 2 1 3 34 34 H 1.09003 * 109.47298 * 5.83541 * 3 2 1 35 35 H 1.09005 * 109.46909 * 245.84494 * 3 2 1 36 36 H 1.08993 * 109.47663 * 195.79854 * 5 4 3 37 37 H 1.09003 * 109.47107 * 315.80444 * 5 4 3 38 38 H 0.96994 * 120.00102 * 180.02562 * 9 8 6 39 39 H 1.09002 * 109.47179 * 299.99464 * 16 14 4 40 40 H 1.08994 * 109.47193 * 59.99868 * 16 14 4 41 41 H 1.09000 * 109.46855 * 179.97438 * 16 14 4 42 42 H 0.97007 * 119.99810 * 0.02562 * 19 17 14 43 43 H 1.09006 * 109.46911 * 299.99917 * 22 20 19 44 44 H 1.08997 * 109.47168 * 59.99328 * 22 20 19 45 45 H 1.09003 * 109.47473 * 179.97438 * 23 22 20 46 46 H 1.09006 * 109.47011 * 299.99809 * 23 22 20 47 47 H 1.09006 * 109.46868 * 60.00176 * 24 23 22 48 48 H 1.09004 * 109.47299 * 180.02562 * 24 23 22 49 49 H 1.09003 * 109.46865 * 60.00891 * 27 25 24 50 50 H 1.09001 * 109.47223 * 180.02562 * 27 25 24 51 51 H 1.08994 * 109.47757 * 300.00491 * 27 25 24 52 52 H 1.09003 * 109.46779 * 60.00359 * 30 28 20 53 53 H 1.08998 * 109.47252 * 179.97438 * 30 28 20 54 54 H 1.08994 * 109.47219 * 300.00074 * 30 28 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 3.0106 1.3238 1.1227 5 6 2.3180 1.5854 2.3915 6 6 1.5927 0.3405 2.8338 7 1 1.6713 -0.5658 2.2518 8 6 0.8286 0.3589 3.9813 9 7 0.1960 -0.7275 4.3675 10 14 0.6931 1.9264 4.9882 11 1 -0.4605 2.7270 4.5048 12 1 0.4909 1.5803 6.4181 13 1 1.9409 2.7181 4.8421 14 6 4.0789 2.3058 0.8939 15 1 4.6741 2.4131 1.8008 16 6 3.4603 3.6563 0.5272 17 6 4.9614 1.8347 -0.2333 18 8 4.6479 0.8587 -0.8814 19 7 6.0987 2.4981 -0.5211 20 6 6.9567 2.0398 -1.6164 21 1 6.3379 1.6401 -2.4199 22 6 7.8969 0.9466 -1.1048 23 6 8.7935 0.4685 -2.2486 24 6 9.6180 1.6445 -2.7761 25 6 8.6778 2.7376 -3.2878 26 1 8.0594 2.3381 -4.0915 27 6 9.5023 3.9138 -3.8148 28 6 7.7812 3.2155 -2.1446 29 1 7.1114 3.9944 -2.5091 30 6 8.6497 3.7767 -1.0168 31 1 -0.5400 -0.9353 -0.0004 32 1 -0.5401 0.9353 -0.0004 33 1 1.8500 -0.9353 0.0004 34 1 1.3597 2.1310 0.1045 35 1 2.6093 1.4096 -0.9377 36 1 3.0460 1.8708 3.1508 37 1 1.6005 2.3943 2.2537 38 1 -0.3418 -0.7145 5.1746 39 1 2.8652 3.5490 -0.3797 40 1 2.8221 3.9970 1.3424 41 1 4.2530 4.3850 0.3579 42 1 6.3494 3.2785 -0.0024 43 1 8.5157 1.3463 -0.3013 44 1 7.3096 0.1091 -0.7285 45 1 9.4636 -0.3100 -1.8839 46 1 8.1750 0.0689 -3.0523 47 1 10.2365 2.0441 -1.9723 48 1 10.2564 1.3039 -3.5913 49 1 10.1412 3.5734 -4.6297 50 1 8.8325 4.6928 -4.1789 51 1 10.1205 4.3133 -3.0109 52 1 9.3196 2.9978 -0.6523 53 1 9.2375 4.6140 -1.3931 54 1 8.0113 4.1176 -0.2019 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000428850550.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:18 Heat of formation + Delta-G solvation = -44.725123 kcal Electronic energy + Delta-G solvation = -29084.590393 eV Core-core repulsion = 25441.515473 eV Total energy + Delta-G solvation = -3643.074920 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.54533 -40.19821 -38.35242 -35.48419 -34.69893 -34.50967 -33.50583 -32.09299 -30.93008 -29.15640 -28.16432 -26.74156 -26.52390 -25.15888 -23.18892 -22.70003 -21.71966 -21.05334 -20.50363 -19.42286 -18.85477 -17.94227 -17.30055 -16.68423 -16.43982 -16.22383 -15.80966 -15.65433 -15.60769 -15.41828 -15.00547 -14.85307 -14.72800 -14.44714 -14.17289 -13.85085 -13.51326 -13.48325 -13.40849 -13.18854 -13.11233 -12.82303 -12.75381 -12.51059 -12.48525 -12.47746 -12.24732 -12.12995 -12.06202 -11.83135 -11.76194 -11.56120 -11.44766 -11.28881 -11.10254 -10.98935 -10.71268 -10.50414 -9.95912 -9.83299 -8.99132 -8.15479 -6.15905 1.37074 1.38444 1.48495 1.62223 1.75559 2.16563 2.41319 3.16271 3.31410 3.66611 3.74670 3.80975 3.93713 4.04221 4.14347 4.16035 4.21236 4.28253 4.36928 4.39678 4.42207 4.50234 4.58690 4.60804 4.68040 4.74607 4.75240 4.77562 4.80952 4.85947 4.89433 5.00039 5.04140 5.05660 5.06887 5.15408 5.15552 5.17455 5.23332 5.24376 5.32217 5.40869 5.45808 5.51728 5.62619 5.63914 5.70805 5.85760 5.98648 6.13808 6.39200 6.61415 6.77179 6.92510 7.39298 7.44722 9.00780 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.020735 B = 0.002932 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.042828 B = 9548.541756 C = 9911.095859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.112 4.112 3 C 0.108 3.892 4 N -0.527 5.527 5 C 0.176 3.824 6 C -0.496 4.496 7 H 0.045 0.955 8 C 0.006 3.994 9 N -0.952 5.952 10 Si 0.939 3.061 11 H -0.272 1.272 12 H -0.288 1.288 13 H -0.243 1.243 14 C 0.056 3.944 15 H 0.113 0.887 16 C -0.172 4.172 17 C 0.522 3.478 18 O -0.561 6.561 19 N -0.714 5.714 20 C 0.154 3.846 21 H 0.058 0.942 22 C -0.127 4.127 23 C -0.115 4.115 24 C -0.111 4.111 25 C -0.084 4.084 26 H 0.061 0.939 27 C -0.144 4.144 28 C -0.084 4.084 29 H 0.078 0.922 30 C -0.154 4.154 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.078 0.922 34 H 0.032 0.968 35 H 0.080 0.920 36 H 0.032 0.968 37 H -0.005 1.005 38 H 0.262 0.738 39 H 0.056 0.944 40 H 0.064 0.936 41 H 0.096 0.904 42 H 0.411 0.589 43 H 0.077 0.923 44 H 0.032 0.968 45 H 0.067 0.933 46 H 0.051 0.949 47 H 0.075 0.925 48 H 0.070 0.930 49 H 0.058 0.942 50 H 0.056 0.944 51 H 0.066 0.934 52 H 0.063 0.937 53 H 0.075 0.925 54 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.000 15.571 -14.602 29.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.131 4.131 3 C -0.019 4.019 4 N -0.251 5.251 5 C 0.049 3.951 6 C -0.535 4.535 7 H 0.064 0.936 8 C -0.190 4.190 9 N -0.593 5.593 10 Si 0.763 3.237 11 H -0.197 1.197 12 H -0.214 1.214 13 H -0.166 1.166 14 C -0.056 4.056 15 H 0.131 0.869 16 C -0.231 4.231 17 C 0.309 3.691 18 O -0.439 6.439 19 N -0.367 5.367 20 C 0.049 3.951 21 H 0.076 0.924 22 C -0.166 4.166 23 C -0.153 4.153 24 C -0.148 4.148 25 C -0.103 4.103 26 H 0.080 0.920 27 C -0.201 4.201 28 C -0.102 4.102 29 H 0.096 0.904 30 C -0.211 4.211 31 H 0.106 0.894 32 H 0.113 0.887 33 H 0.097 0.903 34 H 0.050 0.950 35 H 0.098 0.902 36 H 0.050 0.950 37 H 0.012 0.988 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.083 0.917 41 H 0.115 0.885 42 H 0.249 0.751 43 H 0.096 0.904 44 H 0.051 0.949 45 H 0.086 0.914 46 H 0.070 0.930 47 H 0.094 0.906 48 H 0.089 0.911 49 H 0.077 0.923 50 H 0.075 0.925 51 H 0.085 0.915 52 H 0.082 0.918 53 H 0.093 0.907 54 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 20.901 14.356 -14.901 29.411 hybrid contribution -1.082 0.638 1.047 1.635 sum 19.819 14.994 -13.854 28.453 Atomic orbital electron populations 1.23479 0.95647 1.01002 1.03499 1.22481 0.95428 0.98005 0.97174 1.21011 0.93100 0.93829 0.93974 1.61604 1.12609 1.48136 1.02702 1.20034 0.92745 0.94833 0.87467 1.21314 1.26742 0.97505 1.07900 0.93643 1.25759 0.95252 0.99334 0.98667 1.70063 1.33626 1.30277 1.25378 0.85842 0.79861 0.80257 0.77724 1.19711 1.21432 1.16635 1.21832 0.94079 0.91820 0.97868 0.86916 1.22366 1.02621 0.95792 1.02310 1.20704 0.81576 0.82550 0.84300 1.90664 1.73341 1.27614 1.52242 1.45999 1.22217 1.32492 1.36023 1.20920 0.90514 0.95104 0.88512 0.92386 1.21898 0.97726 0.97705 0.99275 1.21473 0.98030 0.98570 0.97264 1.21637 0.97510 0.94551 1.01144 1.21078 0.96468 0.96339 0.96423 0.92036 1.21842 0.99840 0.97163 1.01277 1.21312 0.96688 0.95641 0.96608 0.90387 1.22034 0.99942 1.01635 0.97520 0.89445 0.88663 0.90335 0.94955 0.90175 0.95017 0.98769 0.92943 0.92510 0.91677 0.88497 0.75107 0.90402 0.94945 0.91387 0.92996 0.90605 0.91102 0.92265 0.92537 0.91461 0.91766 0.90664 0.92321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -8.58 14.14 67.78 0.96 -7.62 16 2 C -0.11 -5.13 6.90 25.65 0.18 -4.95 16 3 C 0.11 4.45 3.57 85.56 0.31 4.75 16 4 N -0.53 -22.31 4.13 -884.45 -3.65 -25.95 16 5 C 0.18 8.24 3.25 85.56 0.28 8.51 16 6 C -0.50 -28.59 8.49 25.60 0.22 -28.37 16 7 H 0.05 2.97 6.43 -2.91 -0.02 2.95 16 8 C 0.01 0.35 5.47 84.65 0.46 0.81 16 9 N -0.95 -60.32 13.96 21.45 0.30 -60.02 16 10 Si 0.94 43.66 27.42 68.60 1.88 45.54 16 11 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 12 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 13 H -0.24 -10.16 6.61 99.48 0.66 -9.51 16 14 C 0.06 1.75 2.69 44.17 0.12 1.87 16 15 H 0.11 3.21 7.76 -2.39 -0.02 3.19 16 16 C -0.17 -4.18 8.50 71.98 0.61 -3.57 16 17 C 0.52 16.14 6.72 87.66 0.59 16.73 16 18 O -0.56 -22.60 14.11 -3.03 -0.04 -22.64 16 19 N -0.71 -15.15 4.99 -442.53 -2.21 -17.36 16 20 C 0.15 3.10 2.15 44.99 0.10 3.19 16 21 H 0.06 1.51 7.58 -2.38 -0.02 1.49 16 22 C -0.13 -2.64 5.22 30.59 0.16 -2.48 16 23 C -0.12 -1.94 5.92 30.59 0.18 -1.76 16 24 C -0.11 -1.33 4.93 30.59 0.15 -1.18 16 25 C -0.08 -1.00 2.50 -10.81 -0.03 -1.03 16 26 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 27 C -0.14 -1.25 8.84 71.98 0.64 -0.62 16 28 C -0.08 -1.09 2.41 -10.81 -0.03 -1.11 16 29 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 30 C -0.15 -1.50 7.97 71.98 0.57 -0.92 16 31 H 0.09 3.70 8.06 -2.91 -0.02 3.67 16 32 H 0.10 3.81 7.84 -2.91 -0.02 3.79 16 33 H 0.08 3.91 8.05 -2.91 -0.02 3.89 16 34 H 0.03 1.28 6.76 -2.39 -0.02 1.26 16 35 H 0.08 3.21 5.74 -2.38 -0.01 3.19 16 36 H 0.03 1.44 6.91 -2.39 -0.02 1.42 16 37 H -0.01 -0.24 6.53 -2.39 -0.02 -0.26 16 38 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 39 H 0.06 1.47 6.67 -2.39 -0.02 1.45 16 40 H 0.06 1.67 7.28 -2.39 -0.02 1.65 16 41 H 0.10 1.57 8.13 -2.39 -0.02 1.55 16 42 H 0.41 6.09 6.86 -92.70 -0.64 5.46 16 43 H 0.08 1.40 6.43 -2.38 -0.02 1.38 16 44 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 46 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 47 H 0.08 0.79 6.43 -2.38 -0.02 0.77 16 48 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 49 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 50 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 51 H 0.07 0.49 6.42 -2.39 -0.02 0.47 16 52 H 0.06 0.66 4.81 -2.39 -0.01 0.65 16 53 H 0.07 0.55 6.42 -2.39 -0.02 0.54 16 54 H 0.06 0.51 6.50 -2.39 -0.02 0.49 16 Total: -1.00 -73.57 396.15 1.93 -71.64 By element: Atomic # 1 Polarization: 26.35 SS G_CDS: 0.18 Total: 26.53 kcal Atomic # 6 Polarization: -23.20 SS G_CDS: 5.46 Total: -17.73 kcal Atomic # 7 Polarization: -97.78 SS G_CDS: -5.56 Total: -103.33 kcal Atomic # 8 Polarization: -22.60 SS G_CDS: -0.04 Total: -22.64 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 1.88 Total: 45.54 kcal Total: -73.57 1.93 -71.64 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428850550.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.918 kcal (2) G-P(sol) polarization free energy of solvation -73.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds