Wall clock time and date at job start Tue Mar 31 2020 15:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50705 * 119.99963 * 2 1 4 4 N 1.46907 * 109.46788 * 124.24943 * 3 2 1 5 5 C 1.46901 * 110.99718 * 199.54338 * 4 3 2 6 6 C 1.50697 * 109.47028 * 71.85798 * 5 4 3 7 7 H 1.08005 * 120.00004 * 359.97438 * 6 5 4 8 8 C 1.37879 * 120.00195 * 179.97438 * 6 5 4 9 9 N 1.31512 * 119.99849 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00037 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46917 * 90.00416 * 10 8 6 12 12 H 1.48501 * 109.47211 * 210.00015 * 10 8 6 13 13 H 1.48503 * 109.47282 * 330.00405 * 10 8 6 14 14 C 1.46904 * 110.99667 * 75.59289 * 4 3 2 15 15 H 1.08994 * 109.47326 * 302.03202 * 14 4 3 16 16 C 1.53002 * 109.46888 * 182.02252 * 14 4 3 17 17 C 1.50703 * 109.47072 * 62.02894 * 14 4 3 18 18 O 1.21292 * 120.00081 * 16.79308 * 17 14 4 19 19 N 1.34774 * 120.00372 * 196.79504 * 17 14 4 20 20 C 1.46498 * 120.00421 * 179.97438 * 19 17 14 21 21 H 1.08993 * 109.46901 * 34.99626 * 20 19 17 22 22 C 1.52997 * 109.46997 * 274.99800 * 20 19 17 23 23 C 1.53003 * 109.47124 * 180.02562 * 22 20 19 24 24 C 1.52991 * 109.46964 * 60.00016 * 23 22 20 25 25 C 1.52997 * 109.47187 * 299.99945 * 24 23 22 26 26 H 1.09005 * 109.46951 * 180.02562 * 25 24 23 27 27 C 1.52997 * 109.47476 * 299.99897 * 25 24 23 28 28 C 1.52993 * 109.47073 * 60.00542 * 25 24 23 29 29 H 1.08997 * 109.47599 * 59.99909 * 28 25 24 30 30 C 1.53008 * 109.47380 * 179.97438 * 28 25 24 31 31 H 1.08001 * 120.00181 * 359.97438 * 1 2 3 32 32 H 1.07997 * 119.99973 * 179.97438 * 1 2 3 33 33 H 1.08001 * 120.00181 * 180.02562 * 2 1 3 34 34 H 1.08999 * 109.46970 * 4.25652 * 3 2 1 35 35 H 1.08991 * 109.47550 * 244.24871 * 3 2 1 36 36 H 1.09000 * 109.47046 * 191.85194 * 5 4 3 37 37 H 1.08997 * 109.47458 * 311.85167 * 5 4 3 38 38 H 0.97001 * 119.99911 * 179.97438 * 9 8 6 39 39 H 1.09007 * 109.46640 * 60.00585 * 16 14 4 40 40 H 1.09001 * 109.46710 * 179.97438 * 16 14 4 41 41 H 1.08995 * 109.47248 * 300.00244 * 16 14 4 42 42 H 0.97004 * 119.99335 * 359.97438 * 19 17 14 43 43 H 1.09007 * 109.47470 * 300.00085 * 22 20 19 44 44 H 1.09001 * 109.47130 * 60.00272 * 22 20 19 45 45 H 1.09004 * 109.47043 * 180.02562 * 23 22 20 46 46 H 1.09002 * 109.46594 * 299.99704 * 23 22 20 47 47 H 1.09002 * 109.47720 * 60.00377 * 24 23 22 48 48 H 1.09007 * 109.47249 * 179.97438 * 24 23 22 49 49 H 1.08995 * 109.47461 * 180.02562 * 27 25 24 50 50 H 1.08998 * 109.47363 * 300.00730 * 27 25 24 51 51 H 1.09001 * 109.46893 * 59.99914 * 27 25 24 52 52 H 1.08997 * 109.47388 * 179.97438 * 30 28 25 53 53 H 1.09006 * 109.46731 * 59.99721 * 30 28 25 54 54 H 1.08998 * 109.47166 * 300.00332 * 30 28 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9833 1.3394 1.1449 5 6 3.3838 2.7178 1.4573 6 6 2.2200 3.4521 2.0714 7 1 1.2769 2.9456 2.2149 8 6 2.3590 4.7706 2.4501 9 7 3.5074 5.3872 2.2759 10 14 0.9160 5.6810 3.2107 11 1 0.9468 5.5129 4.6859 12 1 1.0090 7.1245 2.8750 13 1 -0.3548 5.1292 2.6760 14 6 4.1584 0.4920 0.9015 15 1 3.8350 -0.5303 0.7061 16 6 5.0663 0.5134 2.1329 17 6 4.9169 1.0155 -0.2909 18 8 4.7133 2.1417 -0.6925 19 7 5.8214 0.2322 -0.9111 20 6 6.5583 0.7408 -2.0706 21 1 6.7549 1.8046 -1.9380 22 6 5.7255 0.5300 -3.3367 23 6 6.4954 1.0606 -4.5478 24 6 7.8213 0.3087 -4.6785 25 6 8.6541 0.5195 -3.4125 26 1 9.5990 -0.0159 -3.5059 27 6 8.9309 2.0127 -3.2267 28 6 7.8843 -0.0112 -2.2015 29 1 7.6872 -1.0750 -2.3338 30 6 8.7174 0.1989 -0.9354 31 1 -0.5400 0.9353 0.0004 32 1 -0.5400 -0.9353 -0.0004 33 1 1.8499 -0.9353 -0.0004 34 1 1.3575 2.1322 0.0763 35 1 2.6317 1.3966 -0.9255 36 1 4.2164 2.7037 2.1606 37 1 3.6903 3.2235 0.5417 38 1 3.6051 6.3148 2.5420 39 1 4.5177 0.1348 2.9954 40 1 5.9380 -0.1157 1.9524 41 1 5.3898 1.5358 2.3281 42 1 5.9844 -0.6684 -0.5897 43 1 5.5287 -0.5339 -3.4693 44 1 4.7806 1.0654 -3.2433 45 1 5.9018 0.9109 -5.4497 46 1 6.6923 2.1245 -4.4153 47 1 7.6243 -0.7551 -4.8109 48 1 8.3696 0.6864 -5.5416 49 1 9.5245 2.1628 -2.3250 50 1 9.4792 2.3907 -4.0895 51 1 7.9862 2.5484 -3.1335 52 1 8.1688 -0.1787 -0.0726 53 1 8.9148 1.2627 -0.8029 54 1 9.6619 -0.3370 -1.0289 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000428850553.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:22 Heat of formation + Delta-G solvation = -48.979659 kcal Electronic energy + Delta-G solvation = -29609.939387 eV Core-core repulsion = 25966.679976 eV Total energy + Delta-G solvation = -3643.259411 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.66523 -40.26033 -37.84664 -35.46106 -34.96227 -34.44001 -33.73014 -32.08836 -30.73397 -29.08133 -28.30923 -26.68248 -26.00218 -25.27436 -23.55139 -22.46214 -22.05061 -21.24450 -20.55150 -19.29174 -18.69623 -17.66018 -17.57728 -16.86646 -16.48023 -16.27507 -16.03553 -15.61894 -15.37645 -15.24014 -15.03874 -14.78813 -14.58714 -14.34329 -14.05774 -13.92385 -13.60302 -13.47251 -13.24040 -13.20080 -12.98331 -12.85181 -12.77036 -12.54260 -12.48594 -12.39512 -12.28964 -12.21392 -12.11986 -12.00087 -11.65886 -11.46469 -11.34447 -11.23519 -11.20403 -11.00332 -10.87992 -10.53208 -10.22460 -9.91535 -8.81492 -8.13392 -6.22774 1.37122 1.39848 1.46636 1.50720 1.73337 2.28748 2.41463 3.17017 3.35720 3.59236 3.75303 3.85036 3.98628 4.02042 4.12943 4.16568 4.23007 4.24522 4.37828 4.39561 4.40889 4.45893 4.50057 4.61040 4.68072 4.70341 4.75775 4.84563 4.91405 4.93504 4.98065 5.02921 5.04108 5.07710 5.12190 5.15867 5.20300 5.25782 5.28713 5.33200 5.37142 5.40098 5.45653 5.54569 5.62581 5.66930 5.73250 5.79261 6.02175 6.14476 6.33999 6.53609 6.75235 6.93896 7.43927 7.45297 8.96392 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.013828 B = 0.003618 C = 0.003323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.360166 B = 7737.966435 C = 8424.022656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.143 4.143 3 C 0.085 3.915 4 N -0.506 5.506 5 C 0.196 3.804 6 C -0.520 4.520 7 H 0.056 0.944 8 C -0.002 4.002 9 N -0.936 5.936 10 Si 0.965 3.035 11 H -0.270 1.270 12 H -0.284 1.284 13 H -0.266 1.266 14 C 0.061 3.939 15 H 0.128 0.872 16 C -0.132 4.132 17 C 0.482 3.518 18 O -0.573 6.573 19 N -0.711 5.711 20 C 0.148 3.852 21 H 0.049 0.951 22 C -0.122 4.122 23 C -0.119 4.119 24 C -0.108 4.108 25 C -0.078 4.078 26 H 0.095 0.905 27 C -0.158 4.158 28 C -0.082 4.082 29 H 0.098 0.902 30 C -0.149 4.149 31 H 0.081 0.919 32 H 0.126 0.874 33 H 0.127 0.873 34 H 0.049 0.951 35 H 0.025 0.975 36 H 0.008 0.992 37 H -0.004 1.004 38 H 0.260 0.740 39 H 0.078 0.922 40 H 0.094 0.906 41 H 0.029 0.971 42 H 0.412 0.588 43 H 0.080 0.920 44 H 0.026 0.974 45 H 0.069 0.931 46 H 0.047 0.953 47 H 0.079 0.921 48 H 0.073 0.927 49 H 0.054 0.946 50 H 0.063 0.937 51 H 0.036 0.964 52 H 0.056 0.944 53 H 0.038 0.962 54 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.434 -18.938 -11.842 24.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.162 4.162 3 C -0.043 4.043 4 N -0.229 5.229 5 C 0.070 3.930 6 C -0.559 4.559 7 H 0.074 0.926 8 C -0.199 4.199 9 N -0.577 5.577 10 Si 0.790 3.210 11 H -0.195 1.195 12 H -0.210 1.210 13 H -0.190 1.190 14 C -0.052 4.052 15 H 0.146 0.854 16 C -0.190 4.190 17 C 0.268 3.732 18 O -0.451 6.451 19 N -0.365 5.365 20 C 0.044 3.956 21 H 0.067 0.933 22 C -0.161 4.161 23 C -0.157 4.157 24 C -0.146 4.146 25 C -0.097 4.097 26 H 0.113 0.887 27 C -0.215 4.215 28 C -0.101 4.101 29 H 0.116 0.884 30 C -0.206 4.206 31 H 0.099 0.901 32 H 0.144 0.856 33 H 0.145 0.855 34 H 0.068 0.932 35 H 0.043 0.957 36 H 0.026 0.974 37 H 0.014 0.986 38 H 0.069 0.931 39 H 0.097 0.903 40 H 0.113 0.887 41 H 0.048 0.952 42 H 0.249 0.751 43 H 0.099 0.901 44 H 0.045 0.955 45 H 0.088 0.912 46 H 0.066 0.934 47 H 0.097 0.903 48 H 0.092 0.908 49 H 0.073 0.927 50 H 0.082 0.918 51 H 0.055 0.945 52 H 0.075 0.925 53 H 0.057 0.943 54 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 10.116 -18.140 -11.669 23.823 hybrid contribution -0.270 1.535 -0.047 1.559 sum 9.846 -16.605 -11.716 22.581 Atomic orbital electron populations 1.23921 0.95605 1.02248 1.00596 1.22881 0.96272 0.97166 0.99859 1.21107 0.95281 0.96417 0.91463 1.62555 1.12477 1.12387 1.35436 1.19645 0.94770 0.83929 0.94643 1.21569 0.98596 0.96301 1.39410 0.92589 1.25888 0.98701 0.98462 0.96830 1.70142 1.26251 1.11839 1.49464 0.85450 0.79364 0.77289 0.78908 1.19493 1.20984 1.19050 1.22165 0.90946 0.99573 0.92511 0.85421 1.21774 0.99054 1.01590 0.96544 1.22577 0.80006 0.85410 0.85244 1.90755 1.66110 1.21176 1.67070 1.46149 1.40732 1.18021 1.31548 1.21002 0.91736 0.98190 0.84708 0.93320 1.21835 0.97676 1.01704 0.94853 1.21531 0.97257 0.99750 0.97123 1.21569 0.94551 1.01002 0.97431 1.21107 0.99069 0.95835 0.93714 0.88668 1.22030 1.00865 0.96715 1.01885 1.21369 0.92341 1.00468 0.95929 0.88407 1.21889 1.00422 1.01339 0.96981 0.90104 0.85596 0.85481 0.93230 0.95675 0.97420 0.98629 0.93101 0.90324 0.88729 0.95168 0.75089 0.90090 0.95473 0.91204 0.93410 0.90261 0.90786 0.92711 0.91783 0.94491 0.92535 0.94305 0.90515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.40 14.32 67.79 0.97 -4.43 16 2 C -0.14 -4.60 9.38 25.66 0.24 -4.36 16 3 C 0.09 3.65 4.96 85.56 0.42 4.08 16 4 N -0.51 -22.82 4.38 -884.45 -3.88 -26.70 16 5 C 0.20 11.27 3.82 85.56 0.33 11.59 16 6 C -0.52 -31.79 8.34 25.60 0.21 -31.57 16 7 H 0.06 3.36 7.69 -2.91 -0.02 3.34 16 8 C 0.00 -0.11 5.46 84.66 0.46 0.36 16 9 N -0.94 -60.77 13.29 21.45 0.28 -60.49 16 10 Si 0.97 47.36 29.54 68.60 2.03 49.38 16 11 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 12 H -0.28 -13.64 7.11 99.48 0.71 -12.94 16 13 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 14 C 0.06 2.10 2.70 44.17 0.12 2.21 16 15 H 0.13 3.34 7.11 -2.39 -0.02 3.32 16 16 C -0.13 -4.21 8.94 71.98 0.64 -3.57 16 17 C 0.48 17.62 6.00 87.66 0.53 18.15 16 18 O -0.57 -28.28 11.93 -3.07 -0.04 -28.31 16 19 N -0.71 -18.10 4.38 -442.54 -1.94 -20.04 16 20 C 0.15 3.68 1.63 44.99 0.07 3.75 16 21 H 0.05 1.65 5.87 -2.39 -0.01 1.63 16 22 C -0.12 -2.91 5.49 30.59 0.17 -2.74 16 23 C -0.12 -2.37 5.65 30.59 0.17 -2.19 16 24 C -0.11 -1.52 5.45 30.59 0.17 -1.35 16 25 C -0.08 -1.16 2.72 -10.80 -0.03 -1.19 16 26 H 0.10 1.06 8.14 -2.38 -0.02 1.04 16 27 C -0.16 -3.03 8.15 71.98 0.59 -2.44 16 28 C -0.08 -1.35 2.07 -10.79 -0.02 -1.37 16 29 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 30 C -0.15 -2.53 8.69 71.98 0.63 -1.91 16 31 H 0.08 2.58 7.84 -2.91 -0.02 2.56 16 32 H 0.13 2.76 8.06 -2.91 -0.02 2.73 16 33 H 0.13 3.27 7.34 -2.91 -0.02 3.25 16 34 H 0.05 2.46 6.68 -2.39 -0.02 2.44 16 35 H 0.03 1.15 5.99 -2.39 -0.01 1.13 16 36 H 0.01 0.48 5.55 -2.39 -0.01 0.47 16 37 H 0.00 -0.27 5.61 -2.39 -0.01 -0.28 16 38 H 0.26 15.90 8.31 -92.71 -0.77 15.12 16 39 H 0.08 2.41 8.14 -2.38 -0.02 2.39 16 40 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.03 1.22 6.06 -2.39 -0.01 1.21 16 42 H 0.41 7.16 8.39 -92.71 -0.78 6.38 16 43 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 44 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 46 H 0.05 1.14 6.43 -2.39 -0.02 1.12 16 47 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 48 H 0.07 0.90 8.14 -2.38 -0.02 0.89 16 49 H 0.05 1.07 6.43 -2.39 -0.02 1.05 16 50 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 51 H 0.04 0.91 4.81 -2.39 -0.01 0.90 16 52 H 0.06 0.96 7.44 -2.39 -0.02 0.94 16 53 H 0.04 0.83 6.43 -2.38 -0.02 0.82 16 54 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -79.89 400.19 2.22 -77.68 By element: Atomic # 1 Polarization: 25.38 SS G_CDS: 0.09 Total: 25.47 kcal Atomic # 6 Polarization: -22.66 SS G_CDS: 5.67 Total: -16.99 kcal Atomic # 7 Polarization: -101.70 SS G_CDS: -5.53 Total: -107.23 kcal Atomic # 8 Polarization: -28.28 SS G_CDS: -0.04 Total: -28.31 kcal Atomic # 14 Polarization: 47.36 SS G_CDS: 2.03 Total: 49.38 kcal Total: -79.89 2.22 -77.68 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428850553.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.697 kcal (2) G-P(sol) polarization free energy of solvation -79.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds