Wall clock time and date at job start Tue Mar 31 2020 15:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50690 * 119.99642 * 2 1 4 4 N 1.46905 * 109.47148 * 124.25853 * 3 2 1 5 5 C 1.46903 * 111.00183 * 199.54017 * 4 3 2 6 6 C 1.50698 * 109.46875 * 71.85374 * 5 4 3 7 7 H 1.08000 * 120.00215 * 0.02562 * 6 5 4 8 8 C 1.37882 * 119.99829 * 179.97438 * 6 5 4 9 9 N 1.31506 * 120.00017 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99969 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47124 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.46957 * 119.99991 * 10 8 6 13 13 H 1.48498 * 109.47222 * 240.00114 * 10 8 6 14 14 C 1.46896 * 110.99740 * 75.58604 * 4 3 2 15 15 H 1.08998 * 109.47259 * 302.03896 * 14 4 3 16 16 C 1.53003 * 109.47011 * 182.03845 * 14 4 3 17 17 C 1.50703 * 109.47420 * 62.04232 * 14 4 3 18 18 O 1.21280 * 119.99996 * 16.76473 * 17 14 4 19 19 N 1.34774 * 119.99897 * 197.04640 * 17 14 4 20 20 C 1.46506 * 119.99815 * 179.72100 * 19 17 14 21 21 H 1.09001 * 109.46904 * 34.99457 * 20 19 17 22 22 C 1.53001 * 109.46950 * 275.00226 * 20 19 17 23 23 C 1.53000 * 109.47111 * 299.99801 * 22 20 19 24 24 C 1.53002 * 109.47120 * 300.00193 * 23 22 20 25 25 C 1.53001 * 109.46958 * 60.00104 * 24 23 22 26 26 H 1.09000 * 109.47671 * 60.00051 * 25 24 23 27 27 C 1.53004 * 109.47308 * 180.02562 * 25 24 23 28 28 C 1.52994 * 109.47001 * 155.00063 * 20 19 17 29 29 H 1.09007 * 109.47102 * 180.02562 * 28 20 19 30 30 C 1.52998 * 109.47231 * 299.99560 * 28 20 19 31 31 H 1.08005 * 120.00169 * 179.97438 * 1 2 3 32 32 H 1.08001 * 120.00358 * 0.02562 * 1 2 3 33 33 H 1.07997 * 119.99639 * 180.02562 * 2 1 3 34 34 H 1.09003 * 109.47573 * 4.25857 * 3 2 1 35 35 H 1.09008 * 109.47326 * 244.25700 * 3 2 1 36 36 H 1.08999 * 109.47093 * 191.85719 * 5 4 3 37 37 H 1.09000 * 109.46947 * 311.85830 * 5 4 3 38 38 H 0.97000 * 120.00374 * 179.97438 * 9 8 6 39 39 H 1.08998 * 109.47151 * 300.00117 * 16 14 4 40 40 H 1.08995 * 109.47394 * 59.99841 * 16 14 4 41 41 H 1.09001 * 109.47184 * 180.02562 * 16 14 4 42 42 H 0.96997 * 120.00538 * 359.71921 * 19 17 14 43 43 H 1.08995 * 109.47389 * 59.99954 * 22 20 19 44 44 H 1.09002 * 109.47121 * 180.02562 * 22 20 19 45 45 H 1.08999 * 109.47356 * 60.00193 * 23 22 20 46 46 H 1.09000 * 109.47405 * 180.02562 * 23 22 20 47 47 H 1.09000 * 109.47235 * 179.97438 * 24 23 22 48 48 H 1.08993 * 109.47415 * 300.00070 * 24 23 22 49 49 H 1.09000 * 109.46814 * 59.99403 * 27 25 24 50 50 H 1.09000 * 109.47329 * 179.97438 * 27 25 24 51 51 H 1.09007 * 109.46747 * 299.99858 * 27 25 24 52 52 H 1.09007 * 109.46528 * 60.00321 * 30 28 20 53 53 H 1.09001 * 109.47312 * 179.97438 * 30 28 20 54 54 H 1.09000 * 109.47781 * 300.00830 * 30 28 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9834 1.3394 1.1447 5 6 3.3840 2.7178 1.4571 6 6 2.2202 3.4521 2.0714 7 1 1.2774 2.9454 2.2157 8 6 2.3593 4.7705 2.4502 9 7 3.5074 5.3874 2.2749 10 14 0.9169 5.6805 3.2123 11 1 -0.2528 4.7697 3.2993 12 1 1.2871 6.1431 4.5739 13 1 0.5694 6.8523 2.3688 14 6 4.1584 0.4920 0.9012 15 1 3.8349 -0.5303 0.7058 16 6 5.0664 0.5131 2.1326 17 6 4.9170 1.0155 -0.2911 18 8 4.7131 2.1416 -0.6929 19 7 5.8177 0.2304 -0.9145 20 6 6.5507 0.7372 -2.0774 21 1 6.7495 1.8009 -1.9462 22 6 5.7123 0.5270 -3.3398 23 6 5.4332 -0.9660 -3.5240 24 6 6.7578 -1.7195 -3.6600 25 6 7.5961 -1.5093 -2.3975 26 1 7.0509 -1.8864 -1.5322 27 6 8.9211 -2.2623 -2.5337 28 6 7.8753 -0.0163 -2.2133 29 1 8.4208 0.3611 -3.0783 30 6 8.7136 0.1940 -0.9509 31 1 -0.5401 -0.9353 -0.0004 32 1 -0.5401 0.9353 -0.0004 33 1 1.8499 -0.9353 -0.0004 34 1 1.3575 2.1322 0.0763 35 1 2.6317 1.3966 -0.9257 36 1 4.2168 2.7036 2.1603 37 1 3.6902 3.2235 0.5414 38 1 3.6052 6.3150 2.5410 39 1 5.3899 1.5355 2.3280 40 1 4.5179 0.1346 2.9950 41 1 5.9385 -0.1152 1.9518 42 1 5.9808 -0.6702 -0.5932 43 1 4.7687 1.0638 -3.2429 44 1 6.2578 0.9036 -4.2051 45 1 4.8879 -1.3431 -2.6588 46 1 4.8363 -1.1159 -4.4236 47 1 6.5590 -2.7833 -3.7907 48 1 7.3032 -1.3425 -4.5251 49 1 9.4661 -1.8848 -3.3989 50 1 9.5185 -2.1122 -1.6344 51 1 8.7226 -3.3260 -2.6651 52 1 8.1682 -0.1831 -0.0857 53 1 9.6571 -0.3432 -1.0476 54 1 8.9124 1.2576 -0.8196 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000428850554.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:26 Heat of formation + Delta-G solvation = -48.900315 kcal Electronic energy + Delta-G solvation = -29753.928224 eV Core-core repulsion = 26110.672254 eV Total energy + Delta-G solvation = -3643.255970 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.73474 -40.12763 -37.75565 -35.11873 -34.95240 -34.44964 -33.93400 -32.29607 -31.00234 -29.07704 -28.06504 -26.53947 -25.99527 -25.22440 -23.26916 -22.69150 -21.79051 -21.24036 -20.40191 -19.93076 -18.70668 -17.83606 -17.12705 -16.89039 -16.49596 -16.09815 -16.03787 -15.59585 -15.50648 -15.20852 -15.06540 -14.73454 -14.59715 -14.26865 -14.04815 -13.92182 -13.60138 -13.27936 -13.17693 -13.05156 -12.95947 -12.75833 -12.73069 -12.66552 -12.53117 -12.39635 -12.37438 -12.29597 -12.17105 -11.99695 -11.74078 -11.43260 -11.36108 -11.20638 -11.06993 -11.00372 -10.86758 -10.53702 -10.22111 -9.91310 -8.81000 -8.13051 -6.22230 1.37481 1.38587 1.47083 1.52331 1.74578 2.30941 2.41769 3.17388 3.36209 3.64071 3.74403 3.77785 3.97274 4.01689 4.09861 4.17806 4.19618 4.24160 4.40940 4.43988 4.46271 4.52267 4.61414 4.62262 4.64802 4.75582 4.76941 4.87183 4.90792 4.94779 4.98665 5.03905 5.08086 5.09495 5.11450 5.17142 5.22670 5.27791 5.29753 5.37357 5.39075 5.39367 5.54586 5.55851 5.61531 5.67637 5.73752 5.79931 6.02516 6.14949 6.34634 6.53689 6.74819 6.94582 7.44380 7.45420 8.96856 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.016254 B = 0.003600 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.286099 B = 7775.996721 C = 8558.254648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.143 4.143 3 C 0.085 3.915 4 N -0.506 5.506 5 C 0.195 3.805 6 C -0.518 4.518 7 H 0.056 0.944 8 C -0.002 4.002 9 N -0.935 5.935 10 Si 0.965 3.035 11 H -0.263 1.263 12 H -0.276 1.276 13 H -0.282 1.282 14 C 0.061 3.939 15 H 0.126 0.874 16 C -0.132 4.132 17 C 0.482 3.518 18 O -0.573 6.573 19 N -0.704 5.704 20 C 0.150 3.850 21 H 0.045 0.955 22 C -0.126 4.126 23 C -0.112 4.112 24 C -0.108 4.108 25 C -0.083 4.083 26 H 0.072 0.928 27 C -0.145 4.145 28 C -0.082 4.082 29 H 0.087 0.913 30 C -0.148 4.148 31 H 0.126 0.874 32 H 0.081 0.919 33 H 0.127 0.873 34 H 0.049 0.951 35 H 0.026 0.974 36 H 0.008 0.992 37 H -0.004 1.004 38 H 0.260 0.740 39 H 0.030 0.970 40 H 0.078 0.922 41 H 0.093 0.907 42 H 0.409 0.591 43 H 0.029 0.971 44 H 0.076 0.924 45 H 0.058 0.942 46 H 0.064 0.936 47 H 0.076 0.924 48 H 0.066 0.934 49 H 0.056 0.944 50 H 0.061 0.939 51 H 0.063 0.937 52 H 0.055 0.945 53 H 0.078 0.922 54 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.556 -21.294 -10.784 25.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.162 4.162 3 C -0.042 4.042 4 N -0.228 5.228 5 C 0.070 3.930 6 C -0.557 4.557 7 H 0.074 0.926 8 C -0.199 4.199 9 N -0.577 5.577 10 Si 0.790 3.210 11 H -0.187 1.187 12 H -0.201 1.201 13 H -0.208 1.208 14 C -0.052 4.052 15 H 0.144 0.856 16 C -0.190 4.190 17 C 0.268 3.732 18 O -0.451 6.451 19 N -0.359 5.359 20 C 0.044 3.956 21 H 0.063 0.937 22 C -0.165 4.165 23 C -0.149 4.149 24 C -0.145 4.145 25 C -0.102 4.102 26 H 0.091 0.909 27 C -0.202 4.202 28 C -0.101 4.101 29 H 0.105 0.895 30 C -0.205 4.205 31 H 0.144 0.856 32 H 0.099 0.901 33 H 0.144 0.856 34 H 0.068 0.932 35 H 0.044 0.956 36 H 0.026 0.974 37 H 0.014 0.986 38 H 0.069 0.931 39 H 0.049 0.951 40 H 0.097 0.903 41 H 0.111 0.889 42 H 0.247 0.753 43 H 0.048 0.952 44 H 0.094 0.906 45 H 0.077 0.923 46 H 0.082 0.918 47 H 0.095 0.905 48 H 0.085 0.915 49 H 0.075 0.925 50 H 0.080 0.920 51 H 0.082 0.918 52 H 0.074 0.926 53 H 0.097 0.903 54 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 9.247 -20.507 -10.619 24.875 hybrid contribution -0.176 1.577 -0.171 1.596 sum 9.070 -18.930 -10.791 23.602 Atomic orbital electron populations 1.23923 0.95603 1.02243 1.00606 1.22875 0.96265 0.97164 0.99852 1.21104 0.95272 0.96388 0.91469 1.62551 1.12436 1.12386 1.35458 1.19656 0.94786 0.83924 0.94682 1.21592 0.98584 0.96253 1.39278 0.92605 1.25887 0.98678 0.98490 0.96874 1.70143 1.26184 1.11784 1.49547 0.85402 0.79373 0.78214 0.78029 1.18704 1.20130 1.20816 1.22149 0.90973 0.99505 0.92558 0.85596 1.21775 0.99014 1.01635 0.96578 1.22549 0.80004 0.85394 0.85242 1.90750 1.66027 1.21203 1.67155 1.46132 1.40947 1.17765 1.31011 1.20896 0.92050 0.97447 0.85160 0.93672 1.21845 0.99081 0.98086 0.97483 1.21448 0.98322 0.93427 1.01714 1.21581 0.94691 1.00505 0.97723 1.21143 0.97280 0.93273 0.98457 0.90945 1.21857 0.96020 1.00137 1.02216 1.21379 0.93165 0.96056 0.99516 0.89451 1.21880 1.00488 1.00978 0.97190 0.85634 0.90076 0.85557 0.93208 0.95637 0.97388 0.98576 0.93113 0.95074 0.90307 0.88855 0.75289 0.95200 0.90561 0.92310 0.91773 0.90490 0.91511 0.92477 0.91993 0.91819 0.92604 0.90271 0.94546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.39 14.32 67.78 0.97 -4.42 16 2 C -0.14 -4.58 9.38 25.64 0.24 -4.34 16 3 C 0.09 3.65 4.96 85.55 0.42 4.08 16 4 N -0.51 -22.74 4.38 -884.45 -3.88 -26.62 16 5 C 0.20 11.19 3.82 85.56 0.33 11.52 16 6 C -0.52 -31.60 8.34 25.60 0.21 -31.39 16 7 H 0.06 3.36 7.69 -2.91 -0.02 3.33 16 8 C 0.00 -0.14 5.46 84.66 0.46 0.33 16 9 N -0.94 -60.57 13.29 21.45 0.28 -60.28 16 10 Si 0.96 47.31 29.54 68.60 2.03 49.33 16 11 H -0.26 -12.34 7.11 99.48 0.71 -11.64 16 12 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 13 H -0.28 -13.56 7.11 99.48 0.71 -12.86 16 14 C 0.06 2.10 2.70 44.17 0.12 2.22 16 15 H 0.13 3.31 7.11 -2.39 -0.02 3.30 16 16 C -0.13 -4.23 8.94 71.98 0.64 -3.59 16 17 C 0.48 17.55 6.00 87.66 0.53 18.07 16 18 O -0.57 -28.11 11.93 -3.03 -0.04 -28.15 16 19 N -0.70 -17.90 3.54 -442.53 -1.57 -19.46 16 20 C 0.15 3.72 2.23 44.99 0.10 3.82 16 21 H 0.04 1.50 7.58 -2.39 -0.02 1.48 16 22 C -0.13 -3.00 5.60 30.59 0.17 -2.83 16 23 C -0.11 -1.95 5.77 30.60 0.18 -1.77 16 24 C -0.11 -1.34 5.20 30.60 0.16 -1.18 16 25 C -0.08 -1.02 2.08 -10.79 -0.02 -1.04 16 26 H 0.07 0.85 6.51 -2.39 -0.02 0.84 16 27 C -0.15 -1.37 8.84 71.98 0.64 -0.74 16 28 C -0.08 -1.38 2.04 -10.80 -0.02 -1.40 16 29 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 30 C -0.15 -2.55 8.68 71.98 0.63 -1.93 16 31 H 0.13 2.74 8.06 -2.91 -0.02 2.72 16 32 H 0.08 2.58 7.84 -2.91 -0.02 2.56 16 33 H 0.13 3.25 7.34 -2.91 -0.02 3.23 16 34 H 0.05 2.46 6.69 -2.39 -0.02 2.44 16 35 H 0.03 1.16 5.99 -2.38 -0.01 1.14 16 36 H 0.01 0.50 5.55 -2.39 -0.01 0.48 16 37 H 0.00 -0.23 5.61 -2.39 -0.01 -0.25 16 38 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 39 H 0.03 1.26 6.06 -2.39 -0.01 1.24 16 40 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 41 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 42 H 0.41 7.54 6.65 -92.71 -0.62 6.92 16 43 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 45 H 0.06 1.08 7.60 -2.39 -0.02 1.06 16 46 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 47 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 48 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 49 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 50 H 0.06 0.57 6.43 -2.39 -0.02 0.56 16 51 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16 52 H 0.05 0.97 7.45 -2.38 -0.02 0.95 16 53 H 0.08 1.04 6.43 -2.39 -0.02 1.02 16 54 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -78.59 402.79 2.82 -75.77 By element: Atomic # 1 Polarization: 23.75 SS G_CDS: 0.24 Total: 23.99 kcal Atomic # 6 Polarization: -20.34 SS G_CDS: 5.75 Total: -14.59 kcal Atomic # 7 Polarization: -101.21 SS G_CDS: -5.16 Total: -106.36 kcal Atomic # 8 Polarization: -28.11 SS G_CDS: -0.04 Total: -28.15 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 2.03 Total: 49.33 kcal Total: -78.59 2.82 -75.77 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428850554.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.869 kcal (2) G-P(sol) polarization free energy of solvation -78.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds