Wall clock time and date at job start Tue Mar 31 2020 15:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50694 * 120.00497 * 2 1 4 4 N 1.46893 * 109.47670 * 124.99961 * 3 2 1 5 5 C 1.46894 * 111.00165 * 287.73902 * 4 3 2 6 6 C 1.50706 * 109.47332 * 160.72851 * 5 4 3 7 7 H 1.07996 * 119.99702 * 4.18285 * 6 5 4 8 8 C 1.37878 * 120.00035 * 184.18630 * 6 5 4 9 9 N 1.31511 * 119.99993 * 359.97438 * 8 6 5 10 10 Si 1.86792 * 119.99951 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47125 * 60.00213 * 10 8 6 12 12 H 1.48502 * 109.47401 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.47265 * 300.00153 * 10 8 6 14 14 C 1.46898 * 111.00298 * 163.77947 * 4 3 2 15 15 H 1.09003 * 109.47293 * 178.95812 * 14 4 3 16 16 C 1.53005 * 109.47013 * 58.95756 * 14 4 3 17 17 C 1.50703 * 109.47373 * 298.95931 * 14 4 3 18 18 O 1.21274 * 119.99937 * 359.97438 * 17 14 4 19 19 N 1.34771 * 119.99805 * 179.97438 * 17 14 4 20 20 C 1.46505 * 120.00086 * 179.97438 * 19 17 14 21 21 H 1.09004 * 109.46422 * 34.99628 * 20 19 17 22 22 C 1.53002 * 109.47128 * 275.00212 * 20 19 17 23 23 C 1.53000 * 109.47139 * 179.97438 * 22 20 19 24 24 C 1.53006 * 109.47141 * 59.99740 * 23 22 20 25 25 C 1.52998 * 109.46984 * 300.00108 * 24 23 22 26 26 H 1.09000 * 109.47510 * 300.00005 * 25 24 23 27 27 C 1.53006 * 109.46984 * 179.97438 * 25 24 23 28 28 C 1.52996 * 109.47449 * 154.99830 * 20 19 17 29 29 H 1.08996 * 109.46950 * 59.99784 * 28 20 19 30 30 C 1.53002 * 109.47268 * 300.00297 * 28 20 19 31 31 H 1.08000 * 119.99854 * 359.97438 * 1 2 3 32 32 H 1.08000 * 119.99979 * 180.02562 * 1 2 3 33 33 H 1.08011 * 119.99850 * 179.97438 * 2 1 3 34 34 H 1.09004 * 109.47247 * 5.00008 * 3 2 1 35 35 H 1.09006 * 109.47083 * 245.00512 * 3 2 1 36 36 H 1.09004 * 109.47102 * 280.72669 * 5 4 3 37 37 H 1.09000 * 109.47396 * 40.72757 * 5 4 3 38 38 H 0.97001 * 120.00188 * 179.97438 * 9 8 6 39 39 H 1.09003 * 109.47137 * 300.00151 * 16 14 4 40 40 H 1.09004 * 109.47010 * 59.99992 * 16 14 4 41 41 H 1.08998 * 109.47228 * 180.02562 * 16 14 4 42 42 H 0.97002 * 120.00502 * 359.97438 * 19 17 14 43 43 H 1.08997 * 109.47396 * 59.99637 * 22 20 19 44 44 H 1.08996 * 109.46717 * 299.99876 * 22 20 19 45 45 H 1.09000 * 109.46827 * 300.00058 * 23 22 20 46 46 H 1.08994 * 109.47325 * 180.02562 * 23 22 20 47 47 H 1.08994 * 109.47180 * 180.02562 * 24 23 22 48 48 H 1.08996 * 109.46961 * 59.99675 * 24 23 22 49 49 H 1.08992 * 109.46664 * 60.00071 * 27 25 24 50 50 H 1.09002 * 109.47070 * 179.97438 * 27 25 24 51 51 H 1.08996 * 109.46961 * 299.99567 * 27 25 24 52 52 H 1.09004 * 109.46992 * 300.00440 * 30 28 20 53 53 H 1.09004 * 109.46995 * 59.99961 * 30 28 20 54 54 H 1.08997 * 109.47396 * 179.97438 * 30 28 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9963 1.3319 1.1344 5 6 2.2763 1.4955 2.4043 6 6 3.1595 1.0545 3.5431 7 1 4.1786 0.7533 3.3506 8 6 2.6664 1.0356 4.8305 9 7 1.4256 1.4029 5.0649 10 14 3.7609 0.4884 6.2418 11 1 4.9453 1.3804 6.3244 12 1 2.9990 0.5574 7.5147 13 1 4.2083 -0.9082 6.0085 14 6 4.0052 2.3856 0.9617 15 1 4.6716 2.3956 1.8242 16 6 3.3093 3.7427 0.8391 17 6 4.8042 2.1163 -0.2874 18 8 4.5578 1.1422 -0.9665 19 7 5.7925 2.9579 -0.6497 20 6 6.5696 2.6958 -1.8636 21 1 5.9224 2.2532 -2.6208 22 6 7.7107 1.7292 -1.5399 23 6 8.5219 1.4550 -2.8078 24 6 9.1009 2.7687 -3.3370 25 6 7.9599 3.7352 -3.6606 26 1 7.3124 3.2926 -4.4175 27 6 8.5389 5.0491 -4.1891 28 6 7.1486 4.0096 -2.3922 29 1 7.7958 4.4521 -1.6349 30 6 6.0076 4.9762 -2.7159 31 1 -0.5400 0.9353 0.0004 32 1 -0.5400 -0.9353 0.0004 33 1 1.8500 -0.9354 0.0004 34 1 1.3587 2.1316 0.0896 35 1 2.6213 1.4025 -0.9315 36 1 2.0080 2.5436 2.5374 37 1 1.3715 0.8879 2.3899 38 1 1.0785 1.3893 5.9706 39 1 2.6428 3.7328 -0.0234 40 1 2.7313 3.9376 1.7426 41 1 4.0578 4.5246 0.7105 42 1 5.9893 3.7373 -0.1067 43 1 7.2982 0.7932 -1.1634 44 1 8.3578 2.1717 -0.7827 45 1 7.8744 1.0124 -3.5648 46 1 9.3345 0.7661 -2.5774 47 1 9.6785 2.5734 -4.2404 48 1 9.7483 3.2114 -2.5800 49 1 9.1170 4.8541 -5.0923 50 1 7.7260 5.7375 -4.4202 51 1 9.1860 5.4916 -3.4319 52 1 5.3603 4.5336 -3.4731 53 1 5.4294 5.1713 -1.8126 54 1 6.4201 5.9124 -3.0920 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000428850556.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:30 Heat of formation + Delta-G solvation = -52.051443 kcal Electronic energy + Delta-G solvation = -29065.023195 eV Core-core repulsion = 25421.630582 eV Total energy + Delta-G solvation = -3643.392614 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.49648 -40.00567 -38.21345 -35.51294 -34.95028 -34.47882 -33.96161 -32.02009 -30.63756 -29.09124 -27.95515 -26.55962 -26.23338 -25.48810 -23.29923 -22.08094 -21.73167 -21.31906 -20.65937 -20.13620 -18.40750 -18.05494 -17.38396 -16.77904 -16.36082 -16.05824 -15.83072 -15.51298 -15.41320 -15.24212 -15.19095 -14.93012 -14.63368 -14.43226 -14.11279 -13.75733 -13.59012 -13.53644 -13.26095 -13.04676 -13.00559 -12.75672 -12.71840 -12.66467 -12.58564 -12.49135 -12.33755 -12.12477 -12.02963 -11.95651 -11.77969 -11.75387 -11.33581 -11.32020 -11.25445 -10.99460 -10.57797 -10.55250 -10.10858 -9.86877 -8.92613 -8.15430 -6.24714 1.40967 1.43540 1.44804 1.52307 1.72415 2.17109 2.42917 3.16066 3.40205 3.62981 3.76331 3.81796 3.94969 4.06985 4.10733 4.18988 4.20342 4.28319 4.33340 4.45678 4.46818 4.52955 4.53620 4.63597 4.67571 4.71883 4.76178 4.79995 4.84224 4.87855 5.00290 5.01763 5.05219 5.08125 5.10851 5.14438 5.19865 5.25187 5.28510 5.32123 5.37085 5.39310 5.40064 5.55363 5.59885 5.66545 5.68563 5.75308 5.88619 6.13563 6.34225 6.61705 6.69871 6.89628 7.36610 7.43952 8.94280 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.014169 B = 0.003249 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.613755 B = 8616.113768 C = 9410.870884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.141 4.141 3 C 0.081 3.919 4 N -0.526 5.526 5 C 0.209 3.791 6 C -0.519 4.519 7 H 0.055 0.945 8 C 0.007 3.993 9 N -0.931 5.931 10 Si 0.962 3.038 11 H -0.264 1.264 12 H -0.283 1.283 13 H -0.276 1.276 14 C 0.069 3.931 15 H 0.101 0.899 16 C -0.169 4.169 17 C 0.527 3.473 18 O -0.559 6.559 19 N -0.713 5.713 20 C 0.155 3.845 21 H 0.061 0.939 22 C -0.128 4.128 23 C -0.114 4.114 24 C -0.110 4.110 25 C -0.082 4.082 26 H 0.063 0.937 27 C -0.144 4.144 28 C -0.083 4.083 29 H 0.087 0.913 30 C -0.148 4.148 31 H 0.096 0.904 32 H 0.111 0.889 33 H 0.097 0.903 34 H 0.022 0.978 35 H 0.091 0.909 36 H -0.016 1.016 37 H 0.007 0.993 38 H 0.263 0.737 39 H 0.055 0.945 40 H 0.055 0.945 41 H 0.093 0.907 42 H 0.410 0.590 43 H 0.035 0.965 44 H 0.071 0.929 45 H 0.054 0.946 46 H 0.069 0.931 47 H 0.073 0.927 48 H 0.070 0.930 49 H 0.060 0.940 50 H 0.061 0.939 51 H 0.060 0.940 52 H 0.044 0.956 53 H 0.054 0.946 54 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.356 9.802 -17.809 24.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.159 4.159 3 C -0.046 4.046 4 N -0.249 5.249 5 C 0.084 3.916 6 C -0.558 4.558 7 H 0.074 0.926 8 C -0.192 4.192 9 N -0.572 5.572 10 Si 0.787 3.213 11 H -0.188 1.188 12 H -0.209 1.209 13 H -0.201 1.201 14 C -0.044 4.044 15 H 0.118 0.882 16 C -0.228 4.228 17 C 0.313 3.687 18 O -0.437 6.437 19 N -0.365 5.365 20 C 0.050 3.950 21 H 0.080 0.920 22 C -0.166 4.166 23 C -0.152 4.152 24 C -0.148 4.148 25 C -0.101 4.101 26 H 0.082 0.918 27 C -0.201 4.201 28 C -0.102 4.102 29 H 0.106 0.894 30 C -0.205 4.205 31 H 0.114 0.886 32 H 0.129 0.871 33 H 0.115 0.885 34 H 0.040 0.960 35 H 0.108 0.892 36 H 0.001 0.999 37 H 0.025 0.975 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.112 0.888 42 H 0.247 0.753 43 H 0.054 0.946 44 H 0.090 0.910 45 H 0.073 0.927 46 H 0.087 0.913 47 H 0.092 0.908 48 H 0.089 0.911 49 H 0.079 0.921 50 H 0.080 0.920 51 H 0.079 0.921 52 H 0.063 0.937 53 H 0.073 0.927 54 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 14.299 8.684 -18.142 24.678 hybrid contribution -0.445 0.300 1.396 1.496 sum 13.854 8.984 -16.746 23.517 Atomic orbital electron populations 1.23860 0.95355 1.02265 1.01930 1.22849 0.95954 0.98495 0.98624 1.21314 0.93925 0.93973 0.95427 1.61884 1.15282 1.45275 1.02481 1.19458 0.92978 0.93868 0.85316 1.21396 0.98727 1.43730 0.91933 0.92632 1.25792 0.96412 0.95528 1.01429 1.70066 1.16148 1.49356 1.21619 0.85548 0.78866 0.78930 0.77937 1.18846 1.20871 1.20121 1.21573 0.95324 0.91425 0.96038 0.88159 1.22280 1.01960 0.96457 1.02072 1.20607 0.80109 0.82118 0.85845 1.90599 1.68616 1.29464 1.54986 1.45955 1.34593 1.28321 1.27617 1.20992 0.91613 0.96361 0.86001 0.92037 1.21889 0.97125 0.98639 0.98993 1.21469 0.99134 0.98416 0.96182 1.21606 0.97391 0.94261 1.01501 1.21114 0.96378 0.96747 0.95877 0.91812 1.21845 1.01037 0.96087 1.01177 1.21387 0.97257 0.93288 0.98292 0.89448 1.21887 0.97677 0.99431 1.01539 0.88603 0.87074 0.88461 0.95956 0.89154 0.99893 0.97520 0.92783 0.92546 0.92637 0.88849 0.75319 0.94588 0.91003 0.92710 0.91263 0.90798 0.91142 0.92129 0.92039 0.92085 0.93707 0.92720 0.90612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -6.99 14.32 67.78 0.97 -6.02 16 2 C -0.14 -5.71 8.77 25.65 0.22 -5.49 16 3 C 0.08 3.33 3.99 85.56 0.34 3.68 16 4 N -0.53 -23.94 4.15 -884.47 -3.67 -27.61 16 5 C 0.21 11.17 4.46 85.56 0.38 11.55 16 6 C -0.52 -29.57 8.66 25.60 0.22 -29.35 16 7 H 0.06 3.15 7.61 -2.91 -0.02 3.12 16 8 C 0.01 0.37 5.46 84.66 0.46 0.83 16 9 N -0.93 -55.84 13.29 21.45 0.28 -55.56 16 10 Si 0.96 44.49 29.54 68.60 2.03 46.51 16 11 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 12 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 13 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 14 C 0.07 2.56 2.68 44.17 0.12 2.68 16 15 H 0.10 3.96 7.36 -2.39 -0.02 3.95 16 16 C -0.17 -5.28 8.47 71.98 0.61 -4.67 16 17 C 0.53 17.80 6.69 87.66 0.59 18.39 16 18 O -0.56 -22.93 13.71 -3.01 -0.04 -22.97 16 19 N -0.71 -17.13 4.28 -442.53 -1.89 -19.02 16 20 C 0.15 3.33 1.90 44.99 0.09 3.41 16 21 H 0.06 1.65 7.58 -2.38 -0.02 1.63 16 22 C -0.13 -2.78 5.49 30.59 0.17 -2.62 16 23 C -0.11 -1.96 5.92 30.60 0.18 -1.77 16 24 C -0.11 -1.40 5.20 30.60 0.16 -1.24 16 25 C -0.08 -1.05 2.25 -10.78 -0.02 -1.08 16 26 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 27 C -0.14 -1.40 8.84 71.98 0.64 -0.76 16 28 C -0.08 -1.22 1.83 -10.78 -0.02 -1.24 16 29 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 30 C -0.15 -2.12 8.68 71.98 0.62 -1.49 16 31 H 0.10 3.24 7.84 -2.91 -0.02 3.22 16 32 H 0.11 3.45 8.06 -2.91 -0.02 3.43 16 33 H 0.10 4.10 8.06 -2.90 -0.02 4.07 16 34 H 0.02 0.90 6.81 -2.38 -0.02 0.89 16 35 H 0.09 3.70 5.32 -2.38 -0.01 3.69 16 36 H -0.02 -0.91 5.89 -2.38 -0.01 -0.92 16 37 H 0.01 0.39 7.14 -2.39 -0.02 0.38 16 38 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 39 H 0.06 1.73 6.77 -2.39 -0.02 1.71 16 40 H 0.05 2.03 6.25 -2.39 -0.01 2.01 16 41 H 0.09 2.12 7.56 -2.39 -0.02 2.10 16 42 H 0.41 7.65 7.80 -92.71 -0.72 6.93 16 43 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 45 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 47 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 48 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 49 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 50 H 0.06 0.57 6.43 -2.39 -0.02 0.56 16 51 H 0.06 0.53 8.14 -2.39 -0.02 0.52 16 52 H 0.04 0.74 8.14 -2.38 -0.02 0.72 16 53 H 0.05 0.82 7.45 -2.39 -0.02 0.80 16 54 H 0.08 0.84 6.43 -2.39 -0.02 0.83 16 Total: -1.00 -68.82 408.12 2.56 -66.26 By element: Atomic # 1 Polarization: 27.42 SS G_CDS: 0.13 Total: 27.55 kcal Atomic # 6 Polarization: -20.90 SS G_CDS: 5.73 Total: -15.17 kcal Atomic # 7 Polarization: -96.91 SS G_CDS: -5.28 Total: -102.18 kcal Atomic # 8 Polarization: -22.93 SS G_CDS: -0.04 Total: -22.97 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.51 kcal Total: -68.82 2.56 -66.26 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428850556.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.204 kcal (2) G-P(sol) polarization free energy of solvation -68.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds