Wall clock time and date at job start Tue Mar 31 2020 13:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47368 * 2 1 4 4 N 1.46500 * 109.47641 * 184.93425 * 3 2 1 5 5 C 1.46498 * 120.00270 * 270.97964 * 4 3 2 6 6 C 1.52996 * 109.46772 * 269.99560 * 5 4 3 7 7 C 1.53000 * 109.47184 * 294.99593 * 6 5 4 8 8 C 1.52996 * 109.47184 * 180.02562 * 7 6 5 9 9 C 1.53002 * 109.47019 * 60.00620 * 8 7 6 10 10 C 1.53001 * 109.47008 * 299.99701 * 9 8 7 11 11 C 1.53000 * 109.46885 * 59.99943 * 10 9 8 12 12 C 1.34777 * 119.99722 * 90.97192 * 4 3 2 13 13 O 1.21578 * 120.00248 * 185.51684 * 12 4 3 14 14 N 1.34782 * 119.99875 * 5.51553 * 12 4 3 15 15 C 1.46499 * 119.99719 * 185.11055 * 14 12 4 16 16 C 1.53008 * 109.46838 * 184.89682 * 15 14 12 17 17 C 1.50700 * 115.55045 * 53.79670 * 16 15 14 18 18 H 1.07992 * 120.00055 * 215.54404 * 17 16 15 19 19 C 1.37877 * 119.99854 * 35.27519 * 17 16 15 20 20 N 1.31516 * 119.99984 * 0.29117 * 19 17 16 21 21 Si 1.86801 * 120.00138 * 180.29613 * 19 17 16 22 22 H 1.48498 * 109.47319 * 94.98503 * 21 19 17 23 23 H 1.48495 * 109.47041 * 214.99023 * 21 19 17 24 24 H 1.48508 * 109.46818 * 334.98831 * 21 19 17 25 25 C 1.52997 * 117.49506 * 199.46981 * 16 15 14 26 26 C 1.53000 * 117.49674 * 268.12906 * 16 15 14 27 27 H 1.09001 * 109.47091 * 64.92983 * 1 2 3 28 28 H 1.08998 * 109.47424 * 184.93414 * 1 2 3 29 29 H 1.09004 * 109.46984 * 304.93364 * 1 2 3 30 30 H 1.09003 * 109.46649 * 240.00677 * 2 1 3 31 31 H 1.09003 * 109.47132 * 120.00785 * 2 1 3 32 32 H 1.09014 * 109.46744 * 64.93931 * 3 2 1 33 33 H 1.08996 * 109.47798 * 304.94584 * 3 2 1 34 34 H 1.08999 * 109.47164 * 29.99729 * 5 4 3 35 35 H 1.08998 * 109.46922 * 149.99210 * 5 4 3 36 36 H 1.09000 * 109.47581 * 55.00221 * 6 5 4 37 37 H 1.08993 * 109.47630 * 300.00488 * 7 6 5 38 38 H 1.09004 * 109.46641 * 60.00663 * 7 6 5 39 39 H 1.09000 * 109.47581 * 300.00628 * 8 7 6 40 40 H 1.09001 * 109.47110 * 180.02562 * 8 7 6 41 41 H 1.08999 * 109.47110 * 179.97438 * 9 8 7 42 42 H 1.08997 * 109.47493 * 60.00105 * 9 8 7 43 43 H 1.09004 * 109.47067 * 300.00241 * 10 9 8 44 44 H 1.08994 * 109.47033 * 180.02562 * 10 9 8 45 45 H 1.09001 * 109.47009 * 179.97438 * 11 10 9 46 46 H 1.09004 * 109.47024 * 60.00272 * 11 10 9 47 47 H 0.97005 * 119.99864 * 5.11034 * 14 12 4 48 48 H 1.08995 * 109.47152 * 64.89830 * 15 14 12 49 49 H 1.09001 * 109.47090 * 304.88946 * 15 14 12 50 50 H 0.96999 * 119.99582 * 175.00222 * 20 19 17 51 51 H 1.09004 * 117.49810 * 214.99900 * 25 16 15 52 52 H 1.08998 * 117.50344 * 0.02697 * 25 16 15 53 53 H 1.09004 * 117.49919 * 359.97438 * 26 16 15 54 54 H 1.09001 * 117.50048 * 144.97110 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5002 1.4442 -0.1188 5 6 4.3332 1.3871 1.0850 6 6 4.6268 2.8081 1.5698 7 6 5.4739 3.5384 0.5258 8 6 5.7681 4.9593 1.0109 9 6 6.5320 4.8981 2.3352 10 6 5.6850 4.1678 3.3793 11 6 5.3907 2.7470 2.8941 12 6 4.0772 1.4983 -1.3356 13 8 5.2843 1.3988 -1.4410 14 7 3.3160 1.6627 -2.4357 15 6 3.9290 1.6094 -3.7652 16 6 2.8778 1.9449 -4.8252 17 6 2.1407 3.2435 -4.6215 18 1 1.0974 3.3200 -4.8899 19 6 2.7968 4.3321 -4.0872 20 7 4.0673 4.2390 -3.7608 21 14 1.8810 5.9393 -3.8269 22 1 1.3798 6.0030 -2.4305 23 1 2.8003 7.0787 -4.0754 24 1 0.7346 6.0138 -4.7681 25 6 3.1635 1.5131 -6.2649 26 6 2.1004 0.7806 -5.4424 27 1 -0.3633 0.4355 -0.9309 28 1 -0.3634 -1.0238 0.0884 29 1 -0.3633 0.5885 0.8425 30 1 1.8932 -0.5138 -0.8901 31 1 1.8933 -0.5140 0.8899 32 1 1.7507 1.9301 0.9311 33 1 1.6063 1.9813 -0.8423 34 1 3.8064 0.8383 1.8656 35 1 5.2705 0.8808 0.8544 36 1 3.6886 3.3435 1.7156 37 1 6.4121 3.0031 0.3800 38 1 4.9299 3.5816 -0.4178 39 1 4.8301 5.4949 1.1570 40 1 6.3712 5.4797 0.2669 41 1 6.7420 5.9104 2.6806 42 1 7.4700 4.3626 2.1892 43 1 4.7469 4.7035 3.5253 44 1 6.2289 4.1247 4.3228 45 1 4.7876 2.2265 3.6381 46 1 6.3288 2.2113 2.7481 47 1 2.3623 1.8163 -2.3470 48 1 4.3198 0.6080 -3.9453 49 1 4.7429 2.3324 -3.8192 50 1 4.5478 5.0235 -3.4532 51 1 2.8184 2.1682 -7.0648 52 1 4.1001 0.9896 -6.4569 53 1 2.3381 -0.2244 -5.0937 54 1 1.0557 0.9537 -5.7008 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431202965.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:41 Heat of formation + Delta-G solvation = -45.778972 kcal Electronic energy + Delta-G solvation = -29948.002091 eV Core-core repulsion = 26304.881472 eV Total energy + Delta-G solvation = -3643.120619 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.26114 -39.37940 -38.45928 -37.00748 -34.82281 -34.14745 -33.91359 -32.03067 -31.51411 -28.07489 -27.45872 -27.21374 -25.59063 -23.40329 -22.97081 -22.67523 -22.30657 -21.09029 -20.61376 -20.22237 -19.07056 -17.92092 -17.24048 -16.85708 -16.64543 -15.80330 -15.78853 -15.51314 -15.31347 -15.16065 -15.02814 -14.89882 -14.64545 -14.35252 -14.07304 -13.69274 -13.45574 -13.33260 -13.14372 -13.03524 -12.94029 -12.91882 -12.61296 -12.54729 -12.42534 -12.29617 -12.17344 -12.02712 -12.00096 -11.78849 -11.62031 -11.48077 -11.36569 -11.10255 -10.93262 -10.86201 -10.78745 -10.63383 -10.12028 -9.72546 -9.16119 -7.91531 -6.16327 1.37779 1.42915 1.50797 1.98121 2.40869 2.51770 3.02809 3.36512 3.68387 3.75381 3.86883 3.89739 4.01812 4.14931 4.20571 4.29381 4.35110 4.43515 4.49459 4.53474 4.56431 4.56592 4.63187 4.65422 4.72511 4.76758 4.78927 4.82069 4.83818 4.89242 4.96764 4.99826 5.08087 5.14140 5.18480 5.20449 5.26344 5.27133 5.30187 5.31864 5.34319 5.43543 5.47937 5.52165 5.54523 5.61858 5.63374 5.85518 6.01827 6.06652 6.24619 6.40961 6.84696 7.39127 7.48255 7.96613 8.94690 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.010290 B = 0.005057 C = 0.004190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2720.373392 B = 5535.310726 C = 6681.240306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.131 4.131 3 C 0.110 3.890 4 N -0.631 5.631 5 C 0.139 3.861 6 C -0.094 4.094 7 C -0.096 4.096 8 C -0.118 4.118 9 C -0.114 4.114 10 C -0.112 4.112 11 C -0.105 4.105 12 C 0.701 3.299 13 O -0.641 6.641 14 N -0.701 5.701 15 C 0.196 3.804 16 C 0.011 3.989 17 C -0.502 4.502 18 H 0.057 0.943 19 C 0.039 3.961 20 N -0.881 5.881 21 Si 0.941 3.059 22 H -0.277 1.277 23 H -0.293 1.293 24 H -0.268 1.268 25 C -0.200 4.200 26 C -0.185 4.185 27 H 0.049 0.951 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.042 0.958 31 H 0.075 0.925 32 H 0.099 0.901 33 H 0.058 0.942 34 H 0.105 0.895 35 H 0.058 0.942 36 H 0.068 0.932 37 H 0.037 0.963 38 H 0.023 0.977 39 H 0.054 0.946 40 H 0.040 0.960 41 H 0.069 0.931 42 H 0.056 0.944 43 H 0.063 0.937 44 H 0.080 0.920 45 H 0.086 0.914 46 H 0.058 0.942 47 H 0.396 0.604 48 H 0.006 0.994 49 H 0.074 0.926 50 H 0.252 0.748 51 H 0.077 0.923 52 H 0.073 0.927 53 H 0.082 0.918 54 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.934 -4.184 15.847 16.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.170 4.170 3 C -0.013 4.013 4 N -0.367 5.367 5 C 0.016 3.984 6 C -0.114 4.114 7 C -0.133 4.133 8 C -0.155 4.155 9 C -0.151 4.151 10 C -0.150 4.150 11 C -0.143 4.143 12 C 0.403 3.597 13 O -0.523 6.523 14 N -0.353 5.353 15 C 0.071 3.929 16 C 0.011 3.989 17 C -0.539 4.539 18 H 0.075 0.925 19 C -0.163 4.163 20 N -0.518 5.518 21 Si 0.768 3.232 22 H -0.203 1.203 23 H -0.220 1.220 24 H -0.193 1.193 25 C -0.238 4.238 26 C -0.222 4.222 27 H 0.068 0.932 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.061 0.939 31 H 0.094 0.906 32 H 0.117 0.883 33 H 0.077 0.923 34 H 0.123 0.877 35 H 0.076 0.924 36 H 0.086 0.914 37 H 0.056 0.944 38 H 0.042 0.958 39 H 0.073 0.927 40 H 0.059 0.941 41 H 0.088 0.912 42 H 0.075 0.925 43 H 0.082 0.918 44 H 0.099 0.901 45 H 0.105 0.895 46 H 0.077 0.923 47 H 0.232 0.768 48 H 0.025 0.975 49 H 0.092 0.908 50 H 0.062 0.938 51 H 0.095 0.905 52 H 0.091 0.909 53 H 0.100 0.900 54 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.937 -4.175 15.875 16.676 hybrid contribution -0.434 1.164 -0.841 1.500 sum -3.371 -3.011 15.035 15.699 Atomic orbital electron populations 1.21677 0.93750 1.02561 1.02315 1.21861 0.97141 0.96019 1.02019 1.21689 0.78728 0.97729 1.03157 1.47124 1.06913 1.78486 1.04165 1.21428 0.95087 0.96526 0.85356 1.21535 0.98596 0.95917 0.95335 1.21327 0.98889 0.95673 0.97452 1.21515 0.99945 0.96342 0.97738 1.21513 0.98450 1.00892 0.94290 1.21497 1.00055 0.95364 0.98066 1.21491 1.00129 0.97548 0.95104 1.16026 0.84765 0.77670 0.81256 1.90783 1.14485 1.60823 1.86228 1.44798 1.11038 1.74910 1.04566 1.20503 0.96434 0.95814 0.80148 1.19258 0.96231 0.93232 0.90214 1.20626 0.96373 0.94973 1.41936 0.92497 1.25531 0.95458 1.01029 0.94296 1.70077 1.09285 1.28800 1.43619 0.85816 0.78665 0.80321 0.78428 1.20278 1.21969 1.19257 1.22939 0.98993 1.04603 0.97310 1.22926 0.96357 0.96357 1.06568 0.93193 0.91643 0.91193 0.93939 0.90614 0.88302 0.92321 0.87681 0.92380 0.91350 0.94366 0.95804 0.92716 0.94142 0.91203 0.92543 0.91781 0.90123 0.89527 0.92348 0.76821 0.97546 0.90821 0.93779 0.90460 0.90864 0.89956 0.89723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 9.91 71.98 0.71 -1.91 16 2 C -0.13 -2.93 6.26 30.59 0.19 -2.74 16 3 C 0.11 2.89 5.36 86.38 0.46 3.35 16 4 N -0.63 -20.91 2.36 -839.84 -1.98 -22.89 16 5 C 0.14 3.87 5.01 86.38 0.43 4.31 16 6 C -0.09 -2.53 2.40 -10.79 -0.03 -2.55 16 7 C -0.10 -3.41 4.05 30.59 0.12 -3.29 16 8 C -0.12 -3.61 5.92 30.59 0.18 -3.43 16 9 C -0.11 -2.63 5.92 30.60 0.18 -2.45 16 10 C -0.11 -2.10 5.92 30.59 0.18 -1.92 16 11 C -0.10 -2.09 5.20 30.59 0.16 -1.93 16 12 C 0.70 30.78 6.66 179.05 1.19 31.98 16 13 O -0.64 -33.10 14.57 -3.96 -0.06 -33.16 16 14 N -0.70 -31.49 5.00 -478.53 -2.39 -33.88 16 15 C 0.20 9.76 4.65 86.38 0.40 10.16 16 16 C 0.01 0.54 2.02 -52.93 -0.11 0.43 16 17 C -0.50 -25.57 8.42 25.60 0.22 -25.36 16 18 H 0.06 2.87 7.81 -2.91 -0.02 2.85 16 19 C 0.04 2.03 5.26 84.65 0.45 2.48 16 20 N -0.88 -49.12 10.31 21.45 0.22 -48.90 16 21 Si 0.94 42.05 29.54 68.60 2.03 44.07 16 22 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 23 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 24 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 25 C -0.20 -8.75 9.96 30.62 0.30 -8.44 16 26 C -0.18 -7.48 9.92 30.62 0.30 -7.17 16 27 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.06 1.04 8.14 -2.39 -0.02 1.03 16 29 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.10 2.05 8.08 -2.38 -0.02 2.03 16 33 H 0.06 1.77 6.06 -2.39 -0.01 1.76 16 34 H 0.11 2.09 8.07 -2.39 -0.02 2.08 16 35 H 0.06 1.91 7.35 -2.39 -0.02 1.89 16 36 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.04 1.51 8.09 -2.39 -0.02 1.49 16 38 H 0.02 1.07 6.17 -2.38 -0.01 1.06 16 39 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 44 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 46 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 47 H 0.40 16.88 5.72 -92.70 -0.53 16.35 16 48 H 0.01 0.32 8.08 -2.39 -0.02 0.30 16 49 H 0.07 4.31 5.91 -2.39 -0.01 4.29 16 50 H 0.25 14.07 8.32 -92.71 -0.77 13.29 16 51 H 0.08 3.37 8.14 -2.39 -0.02 3.35 16 52 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 53 H 0.08 3.08 8.14 -2.38 -0.02 3.06 16 54 H 0.08 3.25 8.14 -2.39 -0.02 3.23 16 Total: -1.00 -63.74 412.16 3.48 -60.26 By element: Atomic # 1 Polarization: 42.66 SS G_CDS: 0.31 Total: 42.97 kcal Atomic # 6 Polarization: -13.83 SS G_CDS: 5.36 Total: -8.47 kcal Atomic # 7 Polarization: -101.52 SS G_CDS: -4.16 Total: -105.67 kcal Atomic # 8 Polarization: -33.10 SS G_CDS: -0.06 Total: -33.16 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.07 kcal Total: -63.74 3.48 -60.26 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431202965.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.484 kcal (2) G-P(sol) polarization free energy of solvation -63.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds