Wall clock time and date at job start Tue Mar 31 2020 15:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.46954 * 2 1 4 4 C 1.52994 * 109.47193 * 240.00308 * 2 1 3 5 5 C 1.52999 * 109.47355 * 179.97438 * 4 2 1 6 6 C 1.53007 * 109.47055 * 59.99859 * 5 4 2 7 7 H 1.09001 * 109.47229 * 180.02562 * 6 5 4 8 8 C 1.50700 * 109.46921 * 60.00069 * 6 5 4 9 9 O 1.21277 * 119.99942 * 239.99868 * 8 6 5 10 10 N 1.34777 * 119.99957 * 59.99999 * 8 6 5 11 11 C 1.46498 * 119.99825 * 179.97438 * 10 8 6 12 12 C 1.53002 * 109.47117 * 180.02562 * 11 10 8 13 13 H 1.09007 * 109.49659 * 55.06656 * 12 11 10 14 14 C 1.53038 * 109.49815 * 175.15984 * 12 11 10 15 15 C 1.53045 * 109.53684 * 181.31607 * 14 12 11 16 16 C 1.53622 * 109.24152 * 298.51483 * 15 14 12 17 17 N 1.46925 * 108.54607 * 54.85811 * 16 15 14 18 18 C 1.36928 * 120.63116 * 126.36884 * 17 16 15 19 19 H 1.08003 * 119.99587 * 209.39680 * 18 17 16 20 20 C 1.38811 * 120.00383 * 29.39279 * 18 17 16 21 21 N 1.31616 * 120.00125 * 199.00457 * 20 18 17 22 22 Si 1.86800 * 119.99707 * 19.01056 * 20 18 17 23 23 H 1.48492 * 109.47131 * 273.02549 * 22 20 18 24 24 H 1.48503 * 109.47083 * 33.02468 * 22 20 18 25 25 H 1.48501 * 109.47072 * 153.02248 * 22 20 18 26 26 C 1.46929 * 118.73361 * 306.09324 * 17 16 15 27 27 C 1.53003 * 109.46774 * 300.00354 * 6 5 4 28 28 C 1.52993 * 109.47360 * 120.00050 * 2 1 3 29 29 H 1.08996 * 109.47279 * 59.99752 * 28 2 1 30 30 C 1.53002 * 109.47069 * 300.00087 * 28 2 1 31 31 H 1.08996 * 109.47245 * 299.99808 * 1 2 3 32 32 H 1.09000 * 109.47206 * 60.00300 * 1 2 3 33 33 H 1.09004 * 109.46954 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.47322 * 299.99854 * 4 2 1 35 35 H 1.09000 * 109.47541 * 59.99597 * 4 2 1 36 36 H 1.09004 * 109.47142 * 299.99906 * 5 4 2 37 37 H 1.08996 * 109.47407 * 179.97438 * 5 4 2 38 38 H 0.96999 * 119.99801 * 0.02562 * 10 8 6 39 39 H 1.09001 * 109.47177 * 60.00366 * 11 10 8 40 40 H 1.09000 * 109.47457 * 300.00205 * 11 10 8 41 41 H 1.08998 * 109.46299 * 301.34339 * 14 12 11 42 42 H 1.09004 * 109.45690 * 61.30162 * 14 12 11 43 43 H 1.08993 * 109.49401 * 58.58803 * 15 14 12 44 44 H 1.09003 * 109.49274 * 178.65530 * 15 14 12 45 45 H 1.09004 * 109.73969 * 295.11619 * 16 15 14 46 46 H 1.09006 * 109.66365 * 174.55274 * 16 15 14 47 47 H 0.97004 * 120.00205 * 179.97438 * 21 20 18 48 48 H 1.09000 * 109.58207 * 173.64580 * 26 17 16 49 49 H 1.08999 * 109.58839 * 293.92336 * 26 17 16 50 50 H 1.09000 * 109.46692 * 179.97438 * 27 6 5 51 51 H 1.09004 * 109.47035 * 299.99716 * 27 6 5 52 52 H 1.08998 * 109.47523 * 299.99833 * 30 28 2 53 53 H 1.09001 * 109.46958 * 60.00056 * 30 28 2 54 54 H 1.09000 * 109.46964 * 179.97438 * 30 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2492 5 6 3.5699 -0.7206 -1.2496 6 6 4.0805 -1.4416 -0.0003 7 1 5.1705 -1.4408 -0.0003 8 6 3.5786 -2.8626 -0.0001 9 8 2.8818 -3.2594 0.9097 10 7 3.9043 -3.6924 -1.0109 11 6 3.4169 -5.0739 -1.0104 12 6 3.9273 -5.7953 -2.2594 13 1 5.0137 -5.7189 -2.3052 14 6 3.5203 -7.2694 -2.2001 15 6 4.0585 -7.9989 -3.4331 16 6 3.4440 -7.3784 -4.6969 17 7 3.7122 -5.9339 -4.6861 18 6 4.3143 -5.3281 -5.7564 19 1 4.9242 -4.4494 -5.6067 20 6 4.1409 -5.8433 -7.0336 21 7 4.9825 -5.5212 -7.9929 22 14 2.7131 -6.9935 -7.3908 23 1 3.1128 -8.3897 -7.0813 24 1 1.5493 -6.6139 -6.5501 25 1 2.3419 -6.8912 -8.8251 26 6 3.3164 -5.1508 -3.5076 27 6 3.5704 -0.7203 1.2489 28 6 2.0400 -0.7212 1.2492 29 1 1.6767 -1.7488 1.2492 30 6 1.5300 0.0000 2.4984 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.6767 -1.7488 -1.2493 35 1 1.6766 -0.2074 -2.1392 36 1 3.9329 0.3072 -1.2498 37 1 3.9333 -1.2348 -2.1393 38 1 4.4620 -3.3751 -1.7383 39 1 2.3269 -5.0747 -1.0099 40 1 3.7810 -5.5874 -0.1205 41 1 3.9334 -7.7242 -1.2998 42 1 2.4331 -7.3453 -2.1791 43 1 5.1436 -7.9023 -3.4681 44 1 3.7887 -9.0536 -3.3783 45 1 2.3676 -7.5502 -4.7054 46 1 3.8946 -7.8272 -5.5822 47 1 4.8616 -5.8816 -8.8854 48 1 3.6829 -4.1292 -3.6079 49 1 2.2298 -5.1424 -3.4225 50 1 3.9338 -1.2342 2.1389 51 1 3.9334 0.3075 1.2487 52 1 1.8933 1.0277 2.4985 53 1 0.4400 0.0000 2.4984 54 1 1.8930 -0.5141 3.3884 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449924916.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:32:16 Heat of formation + Delta-G solvation = -71.573570 kcal Electronic energy + Delta-G solvation = -29187.318926 eV Core-core repulsion = 25543.079769 eV Total energy + Delta-G solvation = -3644.239156 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.62026 -39.81838 -38.68831 -36.28134 -34.83184 -34.13293 -32.84859 -32.75909 -31.97120 -28.43756 -27.60587 -27.08801 -26.18903 -23.81870 -23.55720 -22.69855 -22.53221 -21.15855 -20.91982 -20.17833 -18.73861 -17.56569 -17.22265 -16.99653 -16.76810 -16.11459 -15.65728 -15.49453 -15.33349 -15.19794 -15.10728 -14.92779 -14.79466 -14.63298 -14.16743 -13.96801 -13.81500 -13.47041 -13.29099 -13.19640 -13.05348 -12.85951 -12.68344 -12.64549 -12.57667 -12.49297 -12.26386 -12.17320 -12.09514 -11.75783 -11.70320 -11.64481 -11.41274 -11.29844 -11.24287 -10.83962 -10.82311 -10.63582 -10.40477 -9.94849 -8.89744 -8.16917 -5.50288 1.28531 1.40064 1.48471 1.74539 2.32157 2.41005 3.06882 3.30864 3.67749 3.75846 3.81618 3.86139 3.95981 3.98506 4.03206 4.15936 4.23827 4.28625 4.39060 4.44815 4.50168 4.53257 4.60605 4.64427 4.66216 4.74655 4.78373 4.81259 4.83654 4.85492 4.92435 4.95216 4.99266 5.01059 5.07438 5.11197 5.14591 5.15914 5.20371 5.21636 5.25773 5.28150 5.32599 5.37563 5.49636 5.52823 5.55488 5.58805 5.80661 5.88279 6.13448 6.62336 6.92473 7.34372 7.62277 8.04453 9.02934 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.017297 B = 0.003138 C = 0.002920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.431370 B = 8922.027437 C = 9585.188391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.082 4.082 3 H 0.081 0.919 4 C -0.119 4.119 5 C -0.108 4.108 6 C -0.106 4.106 7 H 0.115 0.885 8 C 0.517 3.483 9 O -0.574 6.574 10 N -0.724 5.724 11 C 0.139 3.861 12 C -0.103 4.103 13 H 0.073 0.927 14 C -0.099 4.099 15 C -0.125 4.125 16 C 0.113 3.887 17 N -0.619 5.619 18 C -0.246 4.246 19 H 0.057 0.943 20 C -0.032 4.032 21 N -0.957 5.957 22 Si 0.944 3.056 23 H -0.270 1.270 24 H -0.270 1.270 25 H -0.312 1.312 26 C 0.155 3.845 27 C -0.089 4.089 28 C -0.101 4.101 29 H 0.068 0.932 30 C -0.142 4.142 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.036 0.964 34 H 0.036 0.964 35 H 0.067 0.933 36 H 0.095 0.905 37 H 0.067 0.933 38 H 0.408 0.592 39 H 0.056 0.944 40 H 0.069 0.931 41 H 0.082 0.918 42 H 0.063 0.937 43 H 0.056 0.944 44 H 0.080 0.920 45 H 0.028 0.972 46 H 0.049 0.951 47 H 0.261 0.739 48 H 0.058 0.942 49 H 0.023 0.977 50 H 0.056 0.944 51 H 0.087 0.913 52 H 0.063 0.937 53 H 0.054 0.946 54 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.092 8.964 19.909 22.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.100 4.100 3 H 0.099 0.901 4 C -0.156 4.156 5 C -0.146 4.146 6 C -0.127 4.127 7 H 0.133 0.867 8 C 0.305 3.695 9 O -0.454 6.454 10 N -0.375 5.375 11 C 0.014 3.986 12 C -0.123 4.123 13 H 0.092 0.908 14 C -0.137 4.137 15 C -0.164 4.164 16 C -0.012 4.012 17 N -0.344 5.344 18 C -0.375 4.375 19 H 0.074 0.926 20 C -0.227 4.227 21 N -0.603 5.603 22 Si 0.774 3.226 23 H -0.196 1.196 24 H -0.195 1.195 25 H -0.241 1.241 26 C 0.030 3.970 27 C -0.127 4.127 28 C -0.119 4.119 29 H 0.086 0.914 30 C -0.199 4.199 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.086 0.914 36 H 0.113 0.887 37 H 0.086 0.914 38 H 0.244 0.756 39 H 0.074 0.926 40 H 0.087 0.913 41 H 0.101 0.899 42 H 0.082 0.918 43 H 0.075 0.925 44 H 0.099 0.901 45 H 0.045 0.955 46 H 0.068 0.932 47 H 0.070 0.930 48 H 0.076 0.924 49 H 0.041 0.959 50 H 0.075 0.925 51 H 0.106 0.894 52 H 0.082 0.918 53 H 0.073 0.927 54 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.558 8.661 20.396 22.623 hybrid contribution -0.336 -0.619 -1.323 1.499 sum -4.894 8.042 19.073 21.270 Atomic orbital electron populations 1.21871 0.95583 1.00962 1.02080 1.21147 0.95393 0.99577 0.93906 0.90061 1.21622 0.95865 0.99756 0.98384 1.21550 0.95427 1.02004 0.95575 1.21446 1.02586 0.90196 0.98479 0.86676 1.21091 0.79271 0.88347 0.80808 1.90599 1.39371 1.78048 1.37340 1.46130 1.53574 1.12278 1.25536 1.21207 0.98573 0.81436 0.97341 1.21723 1.00833 0.96232 0.93528 0.90830 1.21366 1.00970 0.93485 0.97861 1.21963 1.00376 0.99488 0.94621 1.21578 0.97153 0.84268 0.98187 1.44480 1.70428 1.03060 1.16413 1.18870 1.21742 1.11467 0.85448 0.92571 1.25902 1.00156 1.01112 0.95522 1.69936 1.37712 1.49540 1.03096 0.85998 0.81864 0.79615 0.75153 1.19612 1.19503 1.24139 1.21063 0.96073 0.94435 0.85468 1.21379 0.95444 1.00382 0.95486 1.21369 0.95409 1.00388 0.94737 0.91407 1.21815 1.00935 1.00373 0.96785 0.91570 0.92447 0.94463 0.94496 0.91381 0.88692 0.91392 0.75620 0.92581 0.91278 0.89900 0.91795 0.92530 0.90115 0.95461 0.93250 0.93001 0.92395 0.95927 0.92528 0.89449 0.91790 0.92656 0.93443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 8.84 71.98 0.64 -2.01 16 2 C -0.08 -1.47 2.25 -10.80 -0.02 -1.49 16 3 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 4 C -0.12 -2.37 4.98 30.59 0.15 -2.21 16 5 C -0.11 -1.81 5.36 30.60 0.16 -1.65 16 6 C -0.11 -1.91 3.01 -11.54 -0.03 -1.95 16 7 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 8 C 0.52 12.71 5.64 87.66 0.49 13.20 16 9 O -0.57 -17.88 13.66 -3.02 -0.04 -17.92 16 10 N -0.72 -17.12 5.22 -463.06 -2.42 -19.54 16 11 C 0.14 3.51 5.07 86.38 0.44 3.95 16 12 C -0.10 -2.91 2.38 -10.72 -0.03 -2.93 16 13 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 14 C -0.10 -2.62 5.16 30.62 0.16 -2.46 16 15 C -0.13 -3.96 6.10 30.82 0.19 -3.77 16 16 C 0.11 4.65 4.22 86.51 0.37 5.02 16 17 N -0.62 -28.07 2.74 -698.26 -1.91 -29.98 16 18 C -0.25 -13.53 10.03 84.03 0.84 -12.69 16 19 H 0.06 3.34 8.06 -2.91 -0.02 3.31 16 20 C -0.03 -1.85 5.24 84.86 0.45 -1.40 16 21 N -0.96 -59.35 13.97 21.65 0.30 -59.04 16 22 Si 0.94 46.44 24.35 68.60 1.67 48.11 16 23 H -0.27 -12.41 6.39 99.48 0.64 -11.77 16 24 H -0.27 -12.96 6.93 99.48 0.69 -12.27 16 25 H -0.31 -15.68 7.11 99.48 0.71 -14.97 16 26 C 0.15 5.58 5.60 86.36 0.48 6.06 16 27 C -0.09 -1.58 4.37 30.61 0.13 -1.44 16 28 C -0.10 -2.01 1.95 -10.78 -0.02 -2.03 16 29 H 0.07 1.84 5.51 -2.39 -0.01 1.83 16 30 C -0.14 -2.38 8.84 71.98 0.64 -1.74 16 31 H 0.07 1.03 6.43 -2.39 -0.02 1.02 16 32 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.04 0.92 7.22 -2.39 -0.02 0.91 16 35 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.07 1.19 7.56 -2.39 -0.02 1.17 16 38 H 0.41 8.85 7.11 -92.71 -0.66 8.19 16 39 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 43 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 45 H 0.03 1.11 7.21 -2.39 -0.02 1.09 16 46 H 0.05 2.27 4.51 -2.38 -0.01 2.26 16 47 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 48 H 0.06 2.07 7.13 -2.39 -0.02 2.05 16 49 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 50 H 0.06 1.12 8.10 -2.39 -0.02 1.10 16 51 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 52 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 53 H 0.05 0.90 6.43 -2.39 -0.02 0.89 16 54 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -67.80 391.41 2.74 -65.06 By element: Atomic # 1 Polarization: 22.75 SS G_CDS: 0.11 Total: 22.85 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: 5.03 Total: -9.55 kcal Atomic # 7 Polarization: -104.54 SS G_CDS: -4.03 Total: -108.57 kcal Atomic # 8 Polarization: -17.88 SS G_CDS: -0.04 Total: -17.92 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 1.67 Total: 48.11 kcal Total: -67.80 2.74 -65.06 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449924916.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.509 kcal (2) G-P(sol) polarization free energy of solvation -67.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds