Wall clock time and date at job start Tue Mar 31 2020 15:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.46988 * 2 1 4 4 C 1.53005 * 109.46734 * 240.00343 * 2 1 3 5 5 C 1.52996 * 109.47252 * 299.99686 * 4 2 1 6 6 C 1.53007 * 109.47122 * 300.00375 * 5 4 2 7 7 H 1.09002 * 109.46769 * 300.00206 * 6 5 4 8 8 C 1.50696 * 109.47014 * 180.02562 * 6 5 4 9 9 O 1.21286 * 119.99727 * 240.00093 * 8 6 5 10 10 N 1.34775 * 120.00174 * 60.00045 * 8 6 5 11 11 C 1.46504 * 119.99789 * 180.02562 * 10 8 6 12 12 C 1.53003 * 109.46702 * 179.97438 * 11 10 8 13 13 H 1.09004 * 109.50081 * 55.06416 * 12 11 10 14 14 C 1.53047 * 109.49406 * 175.15832 * 12 11 10 15 15 C 1.53044 * 109.53637 * 181.31448 * 14 12 11 16 16 C 1.53194 * 109.31341 * 298.63838 * 15 14 12 17 17 N 1.46922 * 108.77648 * 54.62952 * 16 15 14 18 18 C 1.36942 * 120.62727 * 126.66883 * 17 16 15 19 19 H 1.08008 * 119.99813 * 331.59905 * 18 17 16 20 20 C 1.38805 * 120.00309 * 151.60725 * 18 17 16 21 21 N 1.31622 * 119.99962 * 343.11515 * 20 18 17 22 22 Si 1.86795 * 120.00332 * 163.11972 * 20 18 17 23 23 H 1.48504 * 109.47268 * 89.99585 * 22 20 18 24 24 H 1.48502 * 109.47416 * 209.99914 * 22 20 18 25 25 H 1.48507 * 109.47127 * 329.99639 * 22 20 18 26 26 C 1.46919 * 118.74566 * 306.39421 * 17 16 15 27 27 C 1.52994 * 109.47072 * 59.99817 * 6 5 4 28 28 C 1.52996 * 109.47297 * 300.00077 * 27 6 5 29 29 H 1.09002 * 109.47467 * 300.00175 * 28 27 6 30 30 C 1.53004 * 109.47264 * 179.97438 * 28 27 6 31 31 H 1.08999 * 109.46665 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.46610 * 299.99557 * 1 2 3 33 33 H 1.08999 * 109.47109 * 60.00104 * 1 2 3 34 34 H 1.09009 * 109.46534 * 179.97438 * 4 2 1 35 35 H 1.08997 * 109.47184 * 59.99821 * 4 2 1 36 36 H 1.09003 * 109.47203 * 180.02562 * 5 4 2 37 37 H 1.08997 * 109.47011 * 60.00268 * 5 4 2 38 38 H 0.96999 * 119.99845 * 359.97438 * 10 8 6 39 39 H 1.08997 * 109.47278 * 59.99705 * 11 10 8 40 40 H 1.08997 * 109.47058 * 299.99484 * 11 10 8 41 41 H 1.08997 * 109.45984 * 301.33620 * 14 12 11 42 42 H 1.09001 * 109.45959 * 61.31248 * 14 12 11 43 43 H 1.08993 * 109.49625 * 58.58737 * 15 14 12 44 44 H 1.08994 * 109.49634 * 178.65084 * 15 14 12 45 45 H 1.09003 * 109.58667 * 294.84768 * 16 15 14 46 46 H 1.08998 * 109.58422 * 174.42605 * 16 15 14 47 47 H 0.96995 * 120.00418 * 180.02562 * 21 20 18 48 48 H 1.09002 * 109.58826 * 173.39301 * 26 17 16 49 49 H 1.09004 * 109.58940 * 293.82170 * 26 17 16 50 50 H 1.08997 * 109.47140 * 60.00058 * 27 6 5 51 51 H 1.08999 * 109.47396 * 180.02562 * 27 6 5 52 52 H 1.08997 * 109.47208 * 300.00003 * 30 28 27 53 53 H 1.08997 * 109.46858 * 60.00058 * 30 28 27 54 54 H 1.08996 * 109.47114 * 180.02562 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 1.5300 -2.1637 -1.2494 6 6 2.0401 -2.8850 -0.0001 7 1 3.1301 -2.8849 -0.0002 8 6 1.5383 -4.3060 -0.0005 9 8 0.8410 -4.7031 0.9089 10 7 1.8644 -5.1355 -1.0114 11 6 1.3761 -6.5168 -1.0120 12 6 1.8862 -7.2375 -2.2616 13 1 2.9726 -7.1618 -2.3072 14 6 1.4782 -8.7114 -2.2034 15 6 2.0161 -9.4404 -3.4369 16 6 1.4071 -8.8195 -4.6980 17 7 1.6710 -7.3742 -4.6883 18 6 2.2689 -6.7669 -5.7602 19 1 2.9454 -7.3263 -6.3896 20 6 2.0059 -5.4326 -6.0378 21 7 0.9581 -4.8431 -5.5020 22 14 3.1389 -4.4735 -7.1717 23 1 2.6617 -4.6014 -8.5722 24 1 3.1379 -3.0418 -6.7773 25 1 4.5178 -5.0147 -7.0673 26 6 1.2756 -6.5916 -3.5094 27 6 1.5301 -2.1638 1.2491 28 6 2.0401 -0.7213 1.2491 29 1 3.1301 -0.7213 1.2491 30 6 1.5296 0.0001 2.4981 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3632 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 3.1301 -0.7208 -1.2496 35 1 1.6766 -0.2074 -2.1393 36 1 1.8937 -2.6776 -2.1392 37 1 0.4400 -2.1637 -1.2494 38 1 2.4218 -4.8178 -1.7389 39 1 0.2861 -6.5168 -1.0124 40 1 1.7390 -7.0309 -0.1220 41 1 1.8910 -9.1672 -1.3035 42 1 0.3910 -8.7867 -2.1827 43 1 3.1012 -9.3444 -3.4718 44 1 1.7457 -10.4949 -3.3830 45 1 0.3312 -8.9943 -4.7085 46 1 1.8608 -9.2680 -5.5818 47 1 0.7741 -3.9108 -5.6962 48 1 1.6427 -5.5701 -3.6089 49 1 0.1891 -6.5849 -3.4228 50 1 0.4402 -2.1638 1.2491 51 1 1.8938 -2.6774 2.1391 52 1 0.4396 0.0001 2.4977 53 1 1.8926 -0.5136 3.3882 54 1 1.8925 1.0278 2.4979 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449924917.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:32:20 Heat of formation + Delta-G solvation = -76.344797 kcal Electronic energy + Delta-G solvation = -29187.724028 eV Core-core repulsion = 25543.277976 eV Total energy + Delta-G solvation = -3644.446052 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 2.16 seconds Orbital eigenvalues (eV) -41.44843 -39.82990 -39.07674 -36.13454 -34.85000 -33.95274 -32.75158 -32.33626 -31.47771 -28.54847 -27.47207 -27.13219 -26.30442 -24.19453 -23.73332 -22.60522 -22.28548 -21.22708 -20.44119 -19.38323 -18.72702 -17.88487 -17.05472 -16.90694 -16.57438 -16.17881 -15.93403 -15.74219 -15.44805 -15.15806 -14.88644 -14.75084 -14.53331 -14.21511 -14.01347 -13.86341 -13.75825 -13.47784 -13.40332 -13.24356 -12.91399 -12.87396 -12.77545 -12.72176 -12.52682 -12.22938 -12.15456 -11.98886 -11.97732 -11.79902 -11.59730 -11.56316 -11.36475 -11.25146 -11.11232 -11.09350 -10.89280 -10.57190 -10.53039 -10.03095 -8.64861 -7.84548 -5.30839 1.47412 1.49995 1.58996 1.64314 2.28387 2.52815 3.28152 3.58406 3.64067 3.69038 3.74254 3.99616 4.06207 4.09718 4.13395 4.16252 4.24161 4.31457 4.35111 4.40800 4.53606 4.55083 4.62715 4.63375 4.70949 4.78999 4.80610 4.82101 4.87465 4.89639 4.96685 5.02570 5.03185 5.13356 5.14464 5.15994 5.17525 5.19877 5.23806 5.31791 5.35933 5.38496 5.40153 5.47446 5.50360 5.52219 5.56009 5.68073 5.69108 5.78157 6.41238 6.55757 7.17352 7.23943 7.87750 8.40703 9.20741 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.012266 B = 0.003868 C = 0.003084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2282.147581 B = 7237.978197 C = 9076.533468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.083 4.083 3 H 0.085 0.915 4 C -0.109 4.109 5 C -0.109 4.109 6 C -0.097 4.097 7 H 0.114 0.886 8 C 0.512 3.488 9 O -0.586 6.586 10 N -0.718 5.718 11 C 0.138 3.862 12 C -0.111 4.111 13 H 0.071 0.929 14 C -0.099 4.099 15 C -0.121 4.121 16 C 0.135 3.865 17 N -0.611 5.611 18 C -0.266 4.266 19 H 0.063 0.937 20 C -0.041 4.041 21 N -0.929 5.929 22 Si 0.960 3.040 23 H -0.290 1.290 24 H -0.288 1.288 25 H -0.271 1.271 26 C 0.192 3.808 27 C -0.088 4.088 28 C -0.082 4.082 29 H 0.081 0.919 30 C -0.146 4.146 31 H 0.043 0.957 32 H 0.065 0.935 33 H 0.052 0.948 34 H 0.076 0.924 35 H 0.064 0.936 36 H 0.057 0.943 37 H 0.054 0.946 38 H 0.407 0.593 39 H 0.045 0.955 40 H 0.072 0.928 41 H 0.079 0.921 42 H 0.052 0.948 43 H 0.057 0.943 44 H 0.082 0.918 45 H 0.008 0.992 46 H 0.051 0.949 47 H 0.250 0.750 48 H 0.064 0.936 49 H -0.017 1.017 50 H 0.055 0.945 51 H 0.059 0.941 52 H 0.054 0.946 53 H 0.054 0.946 54 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.503 6.836 13.160 15.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.101 4.101 3 H 0.103 0.897 4 C -0.147 4.147 5 C -0.147 4.147 6 C -0.118 4.118 7 H 0.132 0.868 8 C 0.300 3.700 9 O -0.467 6.467 10 N -0.369 5.369 11 C 0.013 3.987 12 C -0.131 4.131 13 H 0.089 0.911 14 C -0.137 4.137 15 C -0.160 4.160 16 C 0.010 3.990 17 N -0.334 5.334 18 C -0.396 4.396 19 H 0.081 0.919 20 C -0.237 4.237 21 N -0.574 5.574 22 Si 0.788 3.212 23 H -0.217 1.217 24 H -0.214 1.214 25 H -0.196 1.196 26 C 0.066 3.934 27 C -0.126 4.126 28 C -0.100 4.100 29 H 0.099 0.901 30 C -0.203 4.203 31 H 0.062 0.938 32 H 0.084 0.916 33 H 0.071 0.929 34 H 0.095 0.905 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.243 0.757 39 H 0.064 0.936 40 H 0.090 0.910 41 H 0.098 0.902 42 H 0.071 0.929 43 H 0.076 0.924 44 H 0.101 0.899 45 H 0.026 0.974 46 H 0.070 0.930 47 H 0.059 0.941 48 H 0.083 0.917 49 H 0.001 0.999 50 H 0.073 0.927 51 H 0.078 0.922 52 H 0.073 0.927 53 H 0.074 0.926 54 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.957 6.679 13.748 15.789 hybrid contribution 0.130 0.427 -1.395 1.464 sum 4.088 7.105 12.354 14.826 Atomic orbital electron populations 1.22001 0.95930 1.01356 1.01859 1.21136 0.95573 0.99559 0.93855 0.89659 1.21553 1.01278 0.93590 0.98262 1.21505 1.00754 0.97020 0.95454 1.21352 1.02777 0.89395 0.98291 0.86831 1.21243 0.79387 0.88562 0.80852 1.90630 1.39960 1.78440 1.37637 1.46127 1.53125 1.12506 1.25121 1.21245 0.98119 0.81442 0.97865 1.21906 1.00540 0.96524 0.94178 0.91096 1.21364 1.00377 0.93474 0.98524 1.21865 1.00235 0.99231 0.94656 1.21118 0.96255 0.84555 0.97108 1.44339 1.70415 1.03488 1.15201 1.19471 1.19009 0.94849 1.06305 0.91919 1.25693 0.97846 0.99572 1.00616 1.70190 1.26813 1.11808 1.48627 0.85403 0.79332 0.77929 0.78517 1.21728 1.21389 1.19585 1.20546 0.93550 0.95435 0.83834 1.21369 1.00703 0.95252 0.95273 1.21138 1.00610 0.93101 0.95149 0.90114 1.21852 1.01320 1.00525 0.96638 0.93768 0.91611 0.92921 0.90541 0.91696 0.92448 0.92751 0.75745 0.93630 0.91008 0.90232 0.92903 0.92382 0.89905 0.97409 0.92995 0.94077 0.91723 0.99889 0.92654 0.92182 0.92746 0.92643 0.91430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 8.15 71.98 0.59 -2.42 16 2 C -0.08 -1.46 2.72 -10.79 -0.03 -1.49 16 3 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 4 C -0.11 -2.21 5.45 30.59 0.17 -2.04 16 5 C -0.11 -2.80 4.83 30.60 0.15 -2.65 16 6 C -0.10 -2.42 2.52 -11.54 -0.03 -2.45 16 7 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 8 C 0.51 16.56 7.15 87.66 0.63 17.19 16 9 O -0.59 -22.74 15.98 -3.05 -0.05 -22.78 16 10 N -0.72 -23.23 5.22 -463.05 -2.42 -25.65 16 11 C 0.14 4.59 5.07 86.38 0.44 5.03 16 12 C -0.11 -3.92 2.38 -10.71 -0.03 -3.95 16 13 H 0.07 2.51 8.14 -2.38 -0.02 2.49 16 14 C -0.10 -3.07 5.17 30.62 0.16 -2.91 16 15 C -0.12 -3.84 6.08 30.67 0.19 -3.65 16 16 C 0.14 5.53 6.51 86.36 0.56 6.09 16 17 N -0.61 -30.00 2.99 -699.10 -2.09 -32.09 16 18 C -0.27 -14.27 9.58 84.03 0.81 -13.46 16 19 H 0.06 3.31 7.89 -2.91 -0.02 3.28 16 20 C -0.04 -2.22 4.92 84.86 0.42 -1.80 16 21 N -0.93 -52.64 11.20 21.65 0.24 -52.40 16 22 Si 0.96 43.04 29.59 68.60 2.03 45.07 16 23 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 24 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 25 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 26 C 0.19 8.85 4.38 86.37 0.38 9.22 16 27 C -0.09 -2.04 3.50 30.59 0.11 -1.93 16 28 C -0.08 -1.42 2.50 -10.79 -0.03 -1.44 16 29 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 30 C -0.15 -2.21 8.84 71.98 0.64 -1.57 16 31 H 0.04 1.03 4.81 -2.39 -0.01 1.02 16 32 H 0.06 1.12 6.43 -2.39 -0.02 1.10 16 33 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 35 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.06 1.64 7.56 -2.39 -0.02 1.63 16 37 H 0.05 1.57 6.43 -2.39 -0.02 1.56 16 38 H 0.41 12.87 7.11 -92.71 -0.66 12.21 16 39 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 41 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 45 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 46 H 0.05 2.09 7.93 -2.39 -0.02 2.07 16 47 H 0.25 13.76 8.31 -92.71 -0.77 12.99 16 48 H 0.06 3.25 5.27 -2.39 -0.01 3.23 16 49 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 50 H 0.05 1.48 6.39 -2.39 -0.02 1.47 16 51 H 0.06 1.46 8.10 -2.39 -0.02 1.44 16 52 H 0.05 0.87 6.43 -2.39 -0.02 0.85 16 53 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 54 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -64.17 397.11 3.01 -61.16 By element: Atomic # 1 Polarization: 30.74 SS G_CDS: 0.20 Total: 30.93 kcal Atomic # 6 Polarization: -9.34 SS G_CDS: 5.11 Total: -4.24 kcal Atomic # 7 Polarization: -105.87 SS G_CDS: -4.27 Total: -110.14 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: -0.05 Total: -22.78 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -64.17 3.01 -61.16 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449924917.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.185 kcal (2) G-P(sol) polarization free energy of solvation -64.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.16 seconds