Wall clock time and date at job start Tue Mar 31 2020 15:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47244 * 2 1 4 4 C 1.53003 * 109.46894 * 239.99797 * 2 1 3 5 5 C 1.53003 * 109.47328 * 299.99856 * 4 2 1 6 6 C 1.53000 * 109.47204 * 300.00401 * 5 4 2 7 7 H 1.08999 * 109.46859 * 300.00399 * 6 5 4 8 8 C 1.50693 * 109.47069 * 179.97438 * 6 5 4 9 9 O 1.21273 * 120.00312 * 239.72137 * 8 6 5 10 10 N 1.34786 * 119.99830 * 60.00481 * 8 6 5 11 11 C 1.46498 * 119.99967 * 179.72544 * 10 8 6 12 12 C 1.53003 * 109.47045 * 179.97438 * 11 10 8 13 13 H 1.08995 * 109.49558 * 305.00301 * 12 11 10 14 14 C 1.53034 * 109.49719 * 184.93101 * 12 11 10 15 15 C 1.53039 * 109.53798 * 178.71377 * 14 12 11 16 16 C 1.53192 * 109.33538 * 61.32336 * 15 14 12 17 17 N 1.46930 * 108.77338 * 305.37609 * 16 15 14 18 18 C 1.36936 * 120.63114 * 233.63117 * 17 16 15 19 19 H 1.07999 * 120.00272 * 152.59786 * 18 17 16 20 20 C 1.38813 * 119.99922 * 332.60533 * 18 17 16 21 21 N 1.31626 * 120.00058 * 159.36300 * 20 18 17 22 22 Si 1.86799 * 120.00203 * 339.35779 * 20 18 17 23 23 H 1.48507 * 109.47087 * 92.90161 * 22 20 18 24 24 H 1.48500 * 109.47220 * 212.90017 * 22 20 18 25 25 H 1.48502 * 109.46979 * 332.90396 * 22 20 18 26 26 C 1.46921 * 118.73855 * 53.61657 * 17 16 15 27 27 C 1.53005 * 109.47057 * 59.99870 * 6 5 4 28 28 C 1.53000 * 109.46986 * 119.99796 * 2 1 3 29 29 H 1.08997 * 109.47235 * 179.97438 * 28 2 1 30 30 C 1.52996 * 109.47100 * 300.00185 * 28 2 1 31 31 H 1.08999 * 109.47215 * 300.00462 * 1 2 3 32 32 H 1.09007 * 109.47092 * 60.00085 * 1 2 3 33 33 H 1.09004 * 109.47091 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.47376 * 60.00557 * 4 2 1 35 35 H 1.09007 * 109.46795 * 180.02562 * 4 2 1 36 36 H 1.08993 * 109.46716 * 180.02562 * 5 4 2 37 37 H 1.08997 * 109.46802 * 60.00393 * 5 4 2 38 38 H 0.96996 * 119.99731 * 359.71792 * 10 8 6 39 39 H 1.08998 * 109.46602 * 299.99497 * 11 10 8 40 40 H 1.08996 * 109.47320 * 59.99692 * 11 10 8 41 41 H 1.08997 * 109.46290 * 298.70980 * 14 12 11 42 42 H 1.09000 * 109.45972 * 58.66353 * 14 12 11 43 43 H 1.09000 * 109.47588 * 301.36744 * 15 14 12 44 44 H 1.09001 * 109.52052 * 181.29807 * 15 14 12 45 45 H 1.09006 * 109.58588 * 185.59426 * 16 15 14 46 46 H 1.08998 * 109.70731 * 65.23747 * 16 15 14 47 47 H 0.96993 * 119.99926 * 180.02562 * 21 20 18 48 48 H 1.08999 * 109.58552 * 186.60318 * 26 17 16 49 49 H 1.08995 * 109.59133 * 66.17253 * 26 17 16 50 50 H 1.08997 * 109.47215 * 59.99845 * 27 6 5 51 51 H 1.08999 * 109.46870 * 180.02562 * 27 6 5 52 52 H 1.09001 * 109.47171 * 179.97438 * 30 28 2 53 53 H 1.08997 * 109.47088 * 299.99770 * 30 28 2 54 54 H 1.08999 * 109.47457 * 60.00276 * 30 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.5300 -2.1639 -1.2492 6 6 2.0399 -2.8851 0.0001 7 1 3.1299 -2.8850 0.0001 8 6 1.5371 -4.3056 0.0004 9 8 0.8441 -4.7034 0.9126 10 7 1.8624 -5.1359 -1.0104 11 6 1.3785 -6.5186 -1.0071 12 6 1.8866 -7.2397 -2.2573 13 1 1.5936 -6.6791 -3.1449 14 6 1.2824 -8.6444 -2.3177 15 6 1.7647 -9.3550 -3.5844 16 6 3.2904 -9.4856 -3.5430 17 7 3.8738 -8.1525 -3.3397 18 6 4.8279 -7.6705 -4.1956 19 1 4.9368 -6.6056 -4.3386 20 6 5.6552 -8.5507 -4.8795 21 7 6.2744 -8.1575 -5.9724 22 14 5.8900 -10.2932 -4.2487 23 1 4.9080 -11.1937 -4.9047 24 1 7.2675 -10.7515 -4.5613 25 1 5.6810 -10.3199 -2.7787 26 6 3.4138 -7.3463 -2.2008 27 6 1.5299 -2.1637 1.2493 28 6 2.0400 -0.7212 1.2493 29 1 3.1299 -0.7216 1.2491 30 6 1.5299 0.0000 2.4984 31 1 -0.3633 0.5139 0.8899 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.6767 -0.2075 -2.1393 35 1 3.1300 -0.7217 -1.2490 36 1 1.8937 -2.6777 -2.1389 37 1 0.4400 -2.1638 -1.2492 38 1 2.4167 -4.8177 -1.7400 39 1 1.7463 -7.0300 -0.1176 40 1 0.2886 -6.5222 -1.0037 41 1 1.5955 -9.2124 -1.4416 42 1 0.1949 -8.5717 -2.3333 43 1 1.4727 -8.7750 -4.4599 44 1 1.3160 -10.3469 -3.6389 45 1 3.6474 -9.9007 -4.4856 46 1 3.5811 -10.1408 -2.7219 47 1 6.8521 -8.7727 -6.4505 48 1 3.8520 -6.3499 -2.2578 49 1 3.7124 -7.8263 -1.2689 50 1 0.4399 -2.1637 1.2493 51 1 1.8936 -2.6773 2.1393 52 1 1.8928 -0.5140 3.3885 53 1 1.8933 1.0277 2.4984 54 1 0.4399 0.0000 2.4985 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449924928.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:32:25 Heat of formation + Delta-G solvation = -73.589328 kcal Electronic energy + Delta-G solvation = -28599.814455 eV Core-core repulsion = 24955.487889 eV Total energy + Delta-G solvation = -3644.326566 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.44744 -39.94245 -39.18882 -36.32578 -34.77532 -33.90498 -32.81022 -32.67421 -31.95823 -28.53363 -27.63525 -27.10079 -26.36015 -24.21019 -23.65852 -22.71746 -22.57680 -21.26571 -20.57740 -19.36542 -18.75861 -17.88890 -17.24297 -17.05337 -16.60732 -16.45928 -15.95296 -15.74834 -15.55157 -15.17196 -14.98448 -14.85403 -14.76059 -14.30051 -14.12675 -13.94861 -13.79193 -13.50389 -13.46195 -13.27554 -13.21432 -13.15520 -12.75886 -12.71100 -12.56402 -12.20468 -12.14289 -12.09260 -11.95290 -11.70609 -11.60287 -11.57242 -11.37392 -11.28857 -11.23584 -11.08765 -10.87653 -10.67083 -10.55694 -10.04209 -8.92779 -8.16714 -5.47626 1.28792 1.40502 1.48884 1.66276 2.25985 2.41221 3.05226 3.31430 3.62487 3.70432 3.76669 3.85441 3.95497 4.00947 4.11584 4.16931 4.23455 4.26785 4.33350 4.39915 4.44552 4.53153 4.57112 4.63551 4.66438 4.73535 4.77850 4.78709 4.81809 4.83485 4.86429 4.98023 4.98540 5.04087 5.07448 5.14518 5.14998 5.19053 5.19657 5.21042 5.25452 5.28483 5.34807 5.40985 5.48005 5.49919 5.52234 5.57874 5.70742 5.86760 6.12866 6.56341 6.91859 7.25767 7.62736 8.03946 9.02962 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.019091 B = 0.002703 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.324739 B =10356.881536 C =11071.680956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.085 4.085 3 H 0.080 0.920 4 C -0.112 4.112 5 C -0.109 4.109 6 C -0.101 4.101 7 H 0.107 0.893 8 C 0.514 3.486 9 O -0.585 6.585 10 N -0.721 5.721 11 C 0.136 3.864 12 C -0.103 4.103 13 H 0.073 0.927 14 C -0.099 4.099 15 C -0.126 4.126 16 C 0.115 3.885 17 N -0.620 5.620 18 C -0.245 4.245 19 H 0.058 0.942 20 C -0.034 4.034 21 N -0.956 5.956 22 Si 0.943 3.057 23 H -0.276 1.276 24 H -0.313 1.313 25 H -0.265 1.265 26 C 0.153 3.847 27 C -0.090 4.090 28 C -0.084 4.084 29 H 0.074 0.926 30 C -0.147 4.147 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.049 0.951 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.410 0.590 39 H 0.059 0.941 40 H 0.069 0.931 41 H 0.065 0.935 42 H 0.083 0.917 43 H 0.055 0.945 44 H 0.081 0.919 45 H 0.046 0.954 46 H 0.029 0.971 47 H 0.261 0.739 48 H 0.058 0.942 49 H 0.026 0.974 50 H 0.060 0.940 51 H 0.052 0.948 52 H 0.050 0.950 53 H 0.064 0.936 54 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.895 14.307 13.106 23.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.103 4.103 3 H 0.098 0.902 4 C -0.149 4.149 5 C -0.147 4.147 6 C -0.122 4.122 7 H 0.125 0.875 8 C 0.302 3.698 9 O -0.465 6.465 10 N -0.372 5.372 11 C 0.012 3.988 12 C -0.123 4.123 13 H 0.092 0.908 14 C -0.137 4.137 15 C -0.165 4.165 16 C -0.010 4.010 17 N -0.344 5.344 18 C -0.374 4.374 19 H 0.076 0.924 20 C -0.229 4.229 21 N -0.602 5.602 22 Si 0.773 3.227 23 H -0.202 1.202 24 H -0.242 1.242 25 H -0.190 1.190 26 C 0.028 3.972 27 C -0.127 4.127 28 C -0.103 4.103 29 H 0.092 0.908 30 C -0.205 4.205 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.246 0.754 39 H 0.077 0.923 40 H 0.088 0.912 41 H 0.083 0.917 42 H 0.101 0.899 43 H 0.074 0.926 44 H 0.100 0.900 45 H 0.065 0.935 46 H 0.047 0.953 47 H 0.070 0.930 48 H 0.077 0.923 49 H 0.044 0.956 50 H 0.079 0.921 51 H 0.071 0.929 52 H 0.069 0.931 53 H 0.083 0.917 54 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.280 13.974 13.641 23.616 hybrid contribution 0.952 -1.012 -0.493 1.474 sum -12.328 12.962 13.148 22.201 Atomic orbital electron populations 1.21991 0.95513 1.01602 1.01900 1.21135 0.95874 0.99397 0.93920 0.90182 1.21569 1.01119 0.94032 0.98178 1.21552 1.01202 0.96572 0.95357 1.21375 1.02585 0.89619 0.98668 0.87461 1.21183 0.79253 0.88526 0.80845 1.90652 1.40215 1.78447 1.37201 1.46120 1.53604 1.12106 1.25392 1.21258 0.98873 0.81083 0.97576 1.21728 0.96255 0.97186 0.97162 0.90812 1.21362 1.00563 0.94165 0.97574 1.21898 0.94918 1.01139 0.98573 1.21442 0.94380 0.86784 0.98381 1.44481 1.44169 1.16189 1.29541 1.18890 1.09145 0.92620 1.16767 0.92428 1.25854 0.97929 1.01687 0.97440 1.69954 1.34974 1.37766 1.17544 0.85969 0.75334 0.81931 0.79486 1.20231 1.24244 1.18953 1.21086 0.92741 0.94925 0.88433 1.21372 1.00889 0.95038 0.95448 1.21143 1.00343 0.93397 0.95368 0.90772 1.21859 1.01428 1.00429 0.96746 0.92159 0.92438 0.93219 0.90794 0.91125 0.91030 0.91703 0.75415 0.92257 0.91226 0.91653 0.89872 0.92595 0.90026 0.93540 0.95297 0.93035 0.92333 0.95646 0.92122 0.92913 0.93054 0.91679 0.92470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 8.15 71.98 0.59 -1.47 16 2 C -0.08 -1.09 2.72 -10.79 -0.03 -1.12 16 3 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 4 C -0.11 -1.48 5.45 30.60 0.17 -1.31 16 5 C -0.11 -1.76 4.83 30.60 0.15 -1.61 16 6 C -0.10 -1.94 2.53 -11.54 -0.03 -1.97 16 7 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 8 C 0.51 13.13 7.15 87.65 0.63 13.76 16 9 O -0.58 -19.27 15.98 -3.01 -0.05 -19.32 16 10 N -0.72 -17.22 5.23 -463.07 -2.42 -19.64 16 11 C 0.14 3.44 5.07 86.38 0.44 3.88 16 12 C -0.10 -2.89 2.37 -10.71 -0.03 -2.92 16 13 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 14 C -0.10 -2.59 5.17 30.62 0.16 -2.44 16 15 C -0.13 -3.97 6.08 30.67 0.19 -3.78 16 16 C 0.11 4.72 4.21 86.36 0.36 5.09 16 17 N -0.62 -28.01 2.77 -699.09 -1.94 -29.94 16 18 C -0.24 -13.46 10.03 84.03 0.84 -12.61 16 19 H 0.06 3.41 8.06 -2.91 -0.02 3.38 16 20 C -0.03 -1.98 5.23 84.86 0.44 -1.54 16 21 N -0.96 -59.35 13.97 21.65 0.30 -59.04 16 22 Si 0.94 46.43 24.34 68.60 1.67 48.10 16 23 H -0.28 -12.83 6.62 99.48 0.66 -12.17 16 24 H -0.31 -15.77 7.11 99.48 0.71 -15.06 16 25 H -0.26 -12.58 6.64 99.48 0.66 -11.92 16 26 C 0.15 5.49 5.60 86.37 0.48 5.97 16 27 C -0.09 -1.71 3.50 30.60 0.11 -1.60 16 28 C -0.08 -1.21 2.50 -10.79 -0.03 -1.23 16 29 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 30 C -0.15 -1.92 8.84 71.98 0.64 -1.28 16 31 H 0.06 0.75 6.43 -2.39 -0.02 0.73 16 32 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 33 H 0.05 0.80 4.81 -2.39 -0.01 0.79 16 34 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.07 0.89 8.14 -2.38 -0.02 0.88 16 36 H 0.07 1.12 7.56 -2.39 -0.02 1.10 16 37 H 0.06 1.13 6.43 -2.39 -0.02 1.12 16 38 H 0.41 8.85 7.11 -92.71 -0.66 8.19 16 39 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 45 H 0.05 2.14 4.50 -2.38 -0.01 2.13 16 46 H 0.03 1.17 7.07 -2.39 -0.02 1.15 16 47 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 48 H 0.06 2.07 7.14 -2.39 -0.02 2.06 16 49 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 50 H 0.06 1.30 6.39 -2.39 -0.02 1.29 16 51 H 0.05 1.15 8.10 -2.39 -0.02 1.13 16 52 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 53 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 54 H 0.06 0.76 6.43 -2.39 -0.02 0.74 16 Total: -1.00 -68.23 390.66 2.75 -65.48 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: 0.11 Total: 20.55 kcal Atomic # 6 Polarization: -11.26 SS G_CDS: 5.08 Total: -6.18 kcal Atomic # 7 Polarization: -104.57 SS G_CDS: -4.05 Total: -108.63 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: -0.05 Total: -19.32 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 1.67 Total: 48.10 kcal Total: -68.23 2.75 -65.48 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449924928.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.113 kcal (2) G-P(sol) polarization free energy of solvation -68.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds