Wall clock time and date at job start Tue Mar 31 2020 15:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.47295 * 2 1 4 4 C 1.53002 * 109.47164 * 240.00691 * 2 1 3 5 5 C 1.53001 * 109.47578 * 179.97438 * 4 2 1 6 6 C 1.53004 * 109.46593 * 59.99970 * 5 4 2 7 7 H 1.09001 * 109.46725 * 180.02562 * 6 5 4 8 8 C 1.50699 * 109.47044 * 60.00182 * 6 5 4 9 9 O 1.21282 * 120.00079 * 239.99563 * 8 6 5 10 10 N 1.34778 * 120.00289 * 59.99908 * 8 6 5 11 11 C 1.46498 * 120.00190 * 179.97438 * 10 8 6 12 12 C 1.53002 * 109.46957 * 180.02562 * 11 10 8 13 13 H 1.09000 * 109.49681 * 305.06223 * 12 11 10 14 14 C 1.53045 * 109.49579 * 185.00085 * 12 11 10 15 15 C 1.53034 * 109.53746 * 178.65138 * 14 12 11 16 16 C 1.53194 * 109.31631 * 61.36443 * 15 14 12 17 17 N 1.46928 * 108.88836 * 305.29172 * 16 15 14 18 18 C 1.36934 * 120.63084 * 233.67060 * 17 16 15 19 19 H 1.07993 * 120.00334 * 27.39912 * 18 17 16 20 20 C 1.38820 * 119.99795 * 207.39526 * 18 17 16 21 21 N 1.31613 * 120.00097 * 17.26991 * 20 18 17 22 22 Si 1.86807 * 119.99669 * 197.26997 * 20 18 17 23 23 H 1.48498 * 109.47115 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.46875 * 120.00003 * 22 20 18 25 25 H 1.48497 * 109.47091 * 240.00248 * 22 20 18 26 26 C 1.47211 * 118.55611 * 53.54535 * 17 16 15 27 27 C 1.53002 * 109.47184 * 300.00272 * 6 5 4 28 28 C 1.52993 * 109.47563 * 120.00621 * 2 1 3 29 29 H 1.09008 * 109.47092 * 59.99860 * 28 2 1 30 30 C 1.53002 * 109.46937 * 300.00208 * 28 2 1 31 31 H 1.09003 * 109.46937 * 299.99317 * 1 2 3 32 32 H 1.09003 * 109.47190 * 59.99205 * 1 2 3 33 33 H 1.08995 * 109.47023 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.47060 * 300.00265 * 4 2 1 35 35 H 1.09003 * 109.46982 * 59.99977 * 4 2 1 36 36 H 1.08995 * 109.47102 * 300.00357 * 5 4 2 37 37 H 1.08992 * 109.47560 * 179.97438 * 5 4 2 38 38 H 0.97001 * 119.99604 * 0.02562 * 10 8 6 39 39 H 1.08993 * 109.47097 * 59.99730 * 11 10 8 40 40 H 1.09003 * 109.47225 * 299.99903 * 11 10 8 41 41 H 1.08997 * 109.46232 * 58.62539 * 14 12 11 42 42 H 1.09008 * 109.44411 * 298.66155 * 14 12 11 43 43 H 1.09000 * 109.50017 * 301.41332 * 15 14 12 44 44 H 1.09004 * 109.49828 * 181.31541 * 15 14 12 45 45 H 1.09000 * 109.58642 * 65.14938 * 16 15 14 46 46 H 1.09001 * 109.58999 * 185.44108 * 16 15 14 47 47 H 0.97008 * 119.99917 * 179.97438 * 21 20 18 48 48 H 1.08998 * 109.53679 * 186.67414 * 26 17 16 49 49 H 1.08996 * 109.68174 * 66.35764 * 26 17 16 50 50 H 1.09003 * 109.46982 * 180.02562 * 27 6 5 51 51 H 1.09003 * 109.47060 * 299.99716 * 27 6 5 52 52 H 1.09003 * 109.47060 * 299.99282 * 30 28 2 53 53 H 1.09001 * 109.47361 * 59.99867 * 30 28 2 54 54 H 1.09003 * 109.46982 * 179.97438 * 30 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5700 -0.7206 -1.2498 6 6 4.0805 -1.4417 -0.0006 7 1 5.1705 -1.4409 -0.0006 8 6 3.5786 -2.8626 -0.0005 9 8 2.8817 -3.2596 0.9093 10 7 3.9042 -3.6925 -1.0113 11 6 3.4168 -5.0740 -1.0109 12 6 3.9272 -5.7952 -2.2600 13 1 3.6396 -5.2325 -3.1481 14 6 3.3181 -7.1978 -2.3247 15 6 3.8017 -7.9078 -3.5912 16 6 5.3268 -8.0446 -3.5445 17 7 5.9175 -6.7152 -3.3386 18 6 6.8767 -6.2382 -4.1915 19 1 6.9050 -6.5776 -5.2164 20 6 7.8126 -5.3183 -3.7389 21 7 8.0053 -5.1570 -2.4469 22 14 8.7986 -4.3095 -4.9635 23 1 8.3961 -4.6765 -6.3450 24 1 8.5368 -2.8650 -4.7394 25 1 10.2462 -4.5846 -4.7797 26 6 5.4537 -5.9081 -2.1982 27 6 3.5705 -0.7206 1.2488 28 6 2.0401 -0.7213 1.2491 29 1 1.6768 -1.7491 1.2490 30 6 1.5301 -0.0002 2.4984 31 1 -0.3633 0.5137 0.8901 32 1 -0.3634 0.5140 -0.8899 33 1 -0.3633 -1.0276 -0.0005 34 1 1.6766 -1.7488 -1.2495 35 1 1.6767 -0.2071 -2.1393 36 1 3.9330 0.3071 -1.2498 37 1 3.9334 -1.2347 -2.1395 38 1 4.4620 -3.3752 -1.7387 39 1 2.3268 -5.0747 -1.0103 40 1 3.7809 -5.5875 -0.1210 41 1 2.2310 -7.1211 -2.3438 42 1 3.6266 -7.7681 -1.4484 43 1 3.5153 -7.3252 -4.4667 44 1 3.3492 -8.8978 -3.6485 45 1 5.6097 -8.7017 -2.7221 46 1 5.6852 -8.4619 -4.4856 47 1 8.6596 -4.5144 -2.1307 48 1 5.8960 -4.9133 -2.2518 49 1 5.7470 -6.3886 -1.2649 50 1 3.9345 -1.2341 2.1387 51 1 3.9335 0.3072 1.2487 52 1 1.8935 1.0274 2.4985 53 1 0.4401 -0.0003 2.4985 54 1 1.8931 -0.5144 3.3883 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449924934.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:32:29 Heat of formation + Delta-G solvation = -74.395946 kcal Electronic energy + Delta-G solvation = -29353.469271 eV Core-core repulsion = 25709.107727 eV Total energy + Delta-G solvation = -3644.361544 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.62431 -39.64561 -38.62787 -36.10466 -34.88566 -34.20311 -32.84534 -32.38115 -31.47940 -28.42474 -27.45160 -27.13531 -26.11165 -23.96246 -23.39610 -22.70384 -22.22220 -21.09157 -20.86395 -20.11901 -18.71192 -17.54292 -17.05752 -16.93203 -16.50866 -15.90229 -15.73184 -15.47942 -15.27128 -15.16858 -14.98446 -14.84669 -14.64737 -14.51030 -14.03100 -13.85791 -13.70364 -13.46641 -13.08384 -12.91992 -12.88316 -12.85472 -12.67741 -12.66108 -12.54801 -12.49454 -12.27262 -12.20433 -11.96637 -11.80429 -11.75278 -11.57411 -11.43133 -11.22028 -11.09632 -10.85179 -10.83388 -10.54660 -10.42232 -9.93810 -8.66699 -7.85335 -5.30604 1.46801 1.50232 1.59919 1.73051 2.32897 2.52547 3.27288 3.60660 3.66000 3.74680 3.80220 3.97944 4.01580 4.07515 4.13768 4.15756 4.25874 4.34829 4.42859 4.47405 4.55524 4.59576 4.63809 4.66437 4.75023 4.80630 4.84270 4.87011 4.88551 4.90532 4.95325 5.00292 5.02891 5.10412 5.12893 5.14168 5.18497 5.20460 5.23918 5.31696 5.35318 5.37119 5.39252 5.50768 5.54117 5.55867 5.56900 5.67875 5.77523 5.80789 6.40132 6.61211 7.16197 7.31979 7.86821 8.40067 9.20417 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.013846 B = 0.003586 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.733511 B = 7805.819124 C = 8911.289489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.082 4.082 3 H 0.081 0.919 4 C -0.115 4.115 5 C -0.107 4.107 6 C -0.110 4.110 7 H 0.100 0.900 8 C 0.517 3.483 9 O -0.575 6.575 10 N -0.720 5.720 11 C 0.141 3.859 12 C -0.110 4.110 13 H 0.070 0.930 14 C -0.099 4.099 15 C -0.121 4.121 16 C 0.135 3.865 17 N -0.612 5.612 18 C -0.263 4.263 19 H 0.064 0.936 20 C -0.044 4.044 21 N -0.931 5.931 22 Si 0.962 3.038 23 H -0.270 1.270 24 H -0.283 1.283 25 H -0.297 1.297 26 C 0.190 3.810 27 C -0.089 4.089 28 C -0.100 4.100 29 H 0.068 0.932 30 C -0.141 4.141 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.038 0.962 34 H 0.038 0.962 35 H 0.077 0.923 36 H 0.094 0.906 37 H 0.065 0.935 38 H 0.405 0.595 39 H 0.069 0.931 40 H 0.045 0.955 41 H 0.078 0.922 42 H 0.052 0.948 43 H 0.057 0.943 44 H 0.082 0.918 45 H 0.008 0.992 46 H 0.051 0.949 47 H 0.250 0.750 48 H 0.065 0.935 49 H -0.016 1.016 50 H 0.049 0.951 51 H 0.087 0.913 52 H 0.063 0.937 53 H 0.059 0.941 54 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.786 10.735 3.361 17.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.100 4.100 3 H 0.100 0.900 4 C -0.152 4.152 5 C -0.144 4.144 6 C -0.131 4.131 7 H 0.118 0.882 8 C 0.305 3.695 9 O -0.455 6.455 10 N -0.371 5.371 11 C 0.016 3.984 12 C -0.130 4.130 13 H 0.088 0.912 14 C -0.137 4.137 15 C -0.160 4.160 16 C 0.010 3.990 17 N -0.335 5.335 18 C -0.393 4.393 19 H 0.082 0.918 20 C -0.240 4.240 21 N -0.577 5.577 22 Si 0.790 3.210 23 H -0.194 1.194 24 H -0.210 1.210 25 H -0.224 1.224 26 C 0.064 3.936 27 C -0.126 4.126 28 C -0.119 4.119 29 H 0.086 0.914 30 C -0.198 4.198 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.095 0.905 36 H 0.113 0.887 37 H 0.084 0.916 38 H 0.240 0.760 39 H 0.087 0.913 40 H 0.063 0.937 41 H 0.097 0.903 42 H 0.071 0.929 43 H 0.076 0.924 44 H 0.101 0.899 45 H 0.026 0.974 46 H 0.070 0.930 47 H 0.059 0.941 48 H 0.083 0.917 49 H 0.002 0.998 50 H 0.068 0.932 51 H 0.105 0.895 52 H 0.082 0.918 53 H 0.078 0.922 54 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -14.161 10.512 4.049 18.095 hybrid contribution 1.403 0.058 -0.599 1.526 sum -12.758 10.570 3.450 16.923 Atomic orbital electron populations 1.21855 0.95074 1.01097 1.02253 1.21149 0.95732 0.99499 0.93651 0.90026 1.21613 0.95024 0.99944 0.98660 1.21542 0.96101 1.01719 0.95078 1.21447 1.01930 0.90499 0.99210 0.88183 1.21071 0.79264 0.88426 0.80753 1.90574 1.39779 1.78189 1.37004 1.46126 1.53186 1.12183 1.25603 1.21190 0.98265 0.81313 0.97620 1.21880 0.97617 0.97028 0.96491 0.91209 1.21362 1.00053 0.94245 0.98071 1.21865 0.95762 1.00695 0.97658 1.21115 0.93279 0.86584 0.98072 1.44404 1.43771 1.14043 1.31299 1.19521 1.05900 1.22227 0.91632 0.91815 1.25700 0.98208 1.03019 0.97076 1.70203 1.36554 1.37488 1.13450 0.85299 0.77733 0.78746 0.79205 1.19428 1.20976 1.22414 1.20609 0.89630 0.96087 0.87227 1.21371 0.96045 1.00135 0.95084 1.21367 0.94772 1.00554 0.95165 0.91386 1.21813 1.01096 1.00305 0.96622 0.91646 0.91976 0.94312 0.94307 0.90479 0.88710 0.91593 0.75954 0.91290 0.93665 0.90320 0.92889 0.92403 0.89906 0.97356 0.93017 0.94116 0.91708 0.99778 0.93169 0.89454 0.91756 0.92217 0.93781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 8.84 71.98 0.64 -1.89 16 2 C -0.08 -1.54 2.25 -10.79 -0.02 -1.56 16 3 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 4 C -0.11 -2.34 4.98 30.60 0.15 -2.19 16 5 C -0.11 -2.15 5.36 30.60 0.16 -1.99 16 6 C -0.11 -2.69 3.01 -11.54 -0.03 -2.73 16 7 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 8 C 0.52 16.31 5.64 87.66 0.49 16.81 16 9 O -0.57 -21.38 13.66 -3.03 -0.04 -21.42 16 10 N -0.72 -23.05 5.22 -463.06 -2.42 -25.47 16 11 C 0.14 4.66 5.07 86.38 0.44 5.09 16 12 C -0.11 -3.87 2.37 -10.71 -0.03 -3.89 16 13 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 14 C -0.10 -3.07 5.17 30.62 0.16 -2.91 16 15 C -0.12 -3.84 6.08 30.67 0.19 -3.65 16 16 C 0.13 5.52 6.51 86.36 0.56 6.08 16 17 N -0.61 -30.06 3.01 -698.36 -2.10 -32.16 16 18 C -0.26 -14.09 9.59 84.04 0.81 -13.29 16 19 H 0.06 3.37 7.88 -2.91 -0.02 3.35 16 20 C -0.04 -2.39 4.92 84.86 0.42 -1.97 16 21 N -0.93 -53.07 11.18 21.65 0.24 -52.82 16 22 Si 0.96 43.16 29.59 68.60 2.03 45.19 16 23 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 24 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 25 H -0.30 -13.56 7.11 99.48 0.71 -12.85 16 26 C 0.19 8.76 4.42 86.31 0.38 9.14 16 27 C -0.09 -2.01 4.37 30.61 0.13 -1.87 16 28 C -0.10 -2.26 1.95 -10.78 -0.02 -2.29 16 29 H 0.07 2.04 5.51 -2.38 -0.01 2.02 16 30 C -0.14 -2.67 8.84 71.98 0.64 -2.04 16 31 H 0.06 1.01 6.43 -2.39 -0.02 0.99 16 32 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.04 0.98 7.22 -2.39 -0.02 0.96 16 35 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.07 1.38 7.56 -2.39 -0.02 1.36 16 38 H 0.41 12.81 7.12 -92.71 -0.66 12.15 16 39 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 43 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 45 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 46 H 0.05 2.07 7.93 -2.39 -0.02 2.06 16 47 H 0.25 13.78 8.31 -92.70 -0.77 13.01 16 48 H 0.06 3.27 5.25 -2.39 -0.01 3.25 16 49 H -0.02 -0.82 8.14 -2.39 -0.02 -0.84 16 50 H 0.05 1.29 8.10 -2.39 -0.02 1.28 16 51 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 52 H 0.06 1.00 8.14 -2.39 -0.02 0.99 16 53 H 0.06 1.05 6.43 -2.39 -0.02 1.03 16 54 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -63.92 397.66 2.96 -60.96 By element: Atomic # 1 Polarization: 30.68 SS G_CDS: 0.19 Total: 30.86 kcal Atomic # 6 Polarization: -10.20 SS G_CDS: 5.06 Total: -5.14 kcal Atomic # 7 Polarization: -106.18 SS G_CDS: -4.28 Total: -110.45 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: -0.04 Total: -21.42 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -63.92 2.96 -60.96 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449924934.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.435 kcal (2) G-P(sol) polarization free energy of solvation -63.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds