Wall clock time and date at job start Tue Mar 31 2020 15:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.46618 * 2 1 4 4 C 1.52999 * 109.47099 * 240.00157 * 2 1 3 5 5 C 1.52994 * 109.46993 * 179.97438 * 4 2 1 6 6 C 1.53000 * 109.47099 * 60.00241 * 5 4 2 7 7 H 1.09000 * 109.46940 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.47293 * 60.00080 * 6 5 4 9 9 O 1.21286 * 119.99945 * 240.00423 * 8 6 5 10 10 N 1.34779 * 119.99945 * 59.99452 * 8 6 5 11 11 C 1.46505 * 119.99618 * 180.02562 * 10 8 6 12 12 C 1.52997 * 109.46669 * 180.02562 * 11 10 8 13 13 C 1.53035 * 109.46213 * 295.06709 * 12 11 10 14 14 C 1.53198 * 109.31692 * 178.61809 * 13 12 11 15 15 N 1.46922 * 108.77400 * 54.63105 * 14 13 12 16 16 C 1.36941 * 120.62777 * 126.37393 * 15 14 13 17 17 H 1.08007 * 119.99790 * 207.98476 * 16 15 14 18 18 C 1.38804 * 120.00077 * 27.98043 * 16 15 14 19 19 N 1.31620 * 119.99909 * 17.50728 * 18 16 15 20 20 Si 1.86803 * 120.00190 * 197.50219 * 18 16 15 21 21 H 1.48502 * 109.46934 * 94.07065 * 20 18 16 22 22 H 1.48507 * 109.47089 * 214.07101 * 20 18 16 23 23 H 1.48503 * 109.47071 * 334.07096 * 20 18 16 24 24 C 1.46928 * 118.74344 * 306.39769 * 15 14 13 25 25 C 1.53047 * 109.45766 * 174.99853 * 12 11 10 26 26 C 1.52999 * 109.47002 * 299.99754 * 6 5 4 27 27 C 1.52994 * 109.46993 * 60.00181 * 26 6 5 28 28 H 1.09003 * 109.47394 * 59.99681 * 27 26 6 29 29 C 1.52997 * 109.47184 * 179.97438 * 27 26 6 30 30 H 1.09003 * 109.47235 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47471 * 299.99660 * 1 2 3 32 32 H 1.09003 * 109.46983 * 59.99936 * 1 2 3 33 33 H 1.09007 * 109.46882 * 59.99815 * 4 2 1 34 34 H 1.09003 * 109.47311 * 300.00240 * 4 2 1 35 35 H 1.09002 * 109.47346 * 299.99766 * 5 4 2 36 36 H 1.09004 * 109.47148 * 180.02562 * 5 4 2 37 37 H 0.96997 * 120.00147 * 0.02562 * 10 8 6 38 38 H 1.09001 * 109.47114 * 60.00619 * 11 10 8 39 39 H 1.08999 * 109.47307 * 299.99792 * 11 10 8 40 40 H 1.09004 * 109.45034 * 55.03405 * 12 11 10 41 41 H 1.09000 * 109.49606 * 298.56633 * 13 12 11 42 42 H 1.08999 * 109.50045 * 58.66635 * 13 12 11 43 43 H 1.08999 * 109.57996 * 294.85046 * 14 13 12 44 44 H 1.08999 * 109.58966 * 174.42598 * 14 13 12 45 45 H 0.97006 * 120.00194 * 179.97438 * 19 18 16 46 46 H 1.09007 * 109.58369 * 293.82213 * 24 15 14 47 47 H 1.08993 * 109.58965 * 173.39546 * 24 15 14 48 48 H 1.09000 * 109.49832 * 301.33656 * 25 12 11 49 49 H 1.08997 * 109.49216 * 61.40220 * 25 12 11 50 50 H 1.08994 * 109.46986 * 179.97438 * 26 6 5 51 51 H 1.08992 * 109.46959 * 300.00145 * 26 6 5 52 52 H 1.09001 * 109.47168 * 179.97438 * 29 27 26 53 53 H 1.09003 * 109.47456 * 300.00007 * 29 27 26 54 54 H 1.09004 * 109.47241 * 60.00194 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7206 -1.2496 6 6 4.0805 -1.4416 -0.0004 7 1 5.1705 -1.4416 -0.0008 8 6 3.5787 -2.8626 -0.0001 9 8 2.8817 -3.2595 0.9097 10 7 3.9044 -3.6924 -1.0110 11 6 3.4161 -5.0737 -1.0110 12 6 3.9266 -5.7950 -2.2599 13 6 3.3181 -5.1488 -3.5065 14 6 3.8582 -5.8511 -4.7563 15 7 3.6007 -7.2927 -4.6371 16 6 2.9408 -7.9679 -5.6291 17 1 2.3651 -8.8502 -5.3911 18 6 3.0118 -7.5184 -6.9404 19 7 3.9597 -6.6780 -7.2976 20 14 1.7621 -8.1063 -8.1983 21 1 0.6442 -7.1321 -8.2779 22 1 2.4143 -8.2212 -9.5276 23 1 1.2346 -9.4328 -7.7893 24 6 4.0641 -7.9960 -3.4333 25 6 3.5217 -7.2697 -2.1983 26 6 3.5705 -0.7204 1.2489 27 6 2.0405 -0.7210 1.2492 28 1 1.6775 -1.7488 1.2493 29 6 1.5305 -0.0003 2.4987 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.6766 -0.2073 -2.1392 34 1 1.6767 -1.7489 -1.2493 35 1 3.9330 0.3072 -1.2498 36 1 3.9333 -1.2341 -2.1398 37 1 4.4620 -3.3751 -1.7385 38 1 2.3261 -5.0738 -1.0111 39 1 3.7794 -5.5876 -0.1210 40 1 5.0130 -5.7183 -2.3047 41 1 2.2330 -5.2471 -3.4744 42 1 3.5875 -4.0931 -3.5375 43 1 4.9310 -5.6771 -4.8382 44 1 3.3542 -5.4617 -5.6409 45 1 4.0096 -6.3641 -8.2141 46 1 5.1539 -7.9969 -3.4073 47 1 3.6960 -9.0218 -3.4449 48 1 3.9361 -7.7235 -1.2981 49 1 2.4347 -7.3478 -2.1779 50 1 3.9338 -1.2343 2.1388 51 1 3.9334 0.3073 1.2487 52 1 0.4405 -0.0003 2.4987 53 1 1.8942 -0.5143 3.3885 54 1 1.8934 1.0275 2.4990 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449942330.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:31:59 Heat of formation + Delta-G solvation = -74.839876 kcal Electronic energy + Delta-G solvation = -28924.808833 eV Core-core repulsion = 25280.428039 eV Total energy + Delta-G solvation = -3644.380794 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.61963 -39.67200 -38.63615 -36.34975 -34.74278 -33.99088 -32.82874 -32.26882 -31.52065 -28.72430 -28.19153 -26.66309 -25.63713 -23.93616 -23.43235 -22.69559 -22.38842 -21.10359 -20.83254 -20.21939 -18.70047 -17.53739 -17.01498 -16.81139 -16.63073 -15.86161 -15.55451 -15.50249 -15.31081 -15.19736 -15.09273 -14.86614 -14.80070 -14.44769 -14.00373 -13.87478 -13.63409 -13.35340 -13.11054 -13.04648 -12.87665 -12.80163 -12.68459 -12.64178 -12.58393 -12.49112 -12.29115 -12.25241 -11.96294 -11.85217 -11.75223 -11.61054 -11.41599 -11.19350 -11.11408 -10.83979 -10.82082 -10.54084 -10.40114 -9.94776 -8.67204 -7.87827 -5.32184 1.45358 1.47105 1.55799 1.75081 2.31772 2.50733 3.26202 3.67799 3.71244 3.75853 3.81356 3.86435 3.95046 4.01600 4.06831 4.16088 4.29061 4.44398 4.49238 4.52744 4.55095 4.61367 4.65738 4.69537 4.73841 4.74151 4.79974 4.84747 4.91678 4.93058 4.95239 5.00440 5.03730 5.11537 5.14641 5.17556 5.20028 5.21446 5.25411 5.29455 5.32588 5.37850 5.41467 5.48081 5.52507 5.54826 5.57510 5.66633 5.78861 5.80944 6.39778 6.64564 7.15949 7.36088 7.87969 8.38480 9.18193 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.018619 B = 0.002760 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.470164 B =10143.373191 C =10809.801452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.082 4.082 3 H 0.083 0.917 4 C -0.120 4.120 5 C -0.107 4.107 6 C -0.105 4.105 7 H 0.119 0.881 8 C 0.514 3.486 9 O -0.577 6.577 10 N -0.720 5.720 11 C 0.138 3.862 12 C -0.078 4.078 13 C -0.118 4.118 14 C 0.177 3.823 15 N -0.612 5.612 16 C -0.263 4.263 17 H 0.063 0.937 18 C -0.049 4.049 19 N -0.932 5.932 20 Si 0.963 3.037 21 H -0.287 1.287 22 H -0.294 1.294 23 H -0.270 1.270 24 C 0.141 3.859 25 C -0.115 4.115 26 C -0.090 4.090 27 C -0.101 4.101 28 H 0.065 0.935 29 C -0.142 4.142 30 H 0.034 0.966 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.070 0.930 34 H 0.034 0.966 35 H 0.097 0.903 36 H 0.073 0.927 37 H 0.410 0.590 38 H 0.048 0.952 39 H 0.065 0.935 40 H 0.077 0.923 41 H 0.041 0.959 42 H 0.071 0.929 43 H 0.000 1.000 44 H 0.049 0.951 45 H 0.250 0.750 46 H 0.017 0.983 47 H 0.051 0.949 48 H 0.082 0.918 49 H 0.052 0.948 50 H 0.054 0.946 51 H 0.089 0.911 52 H 0.053 0.947 53 H 0.045 0.955 54 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.297 16.398 16.771 23.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.100 4.100 3 H 0.101 0.899 4 C -0.157 4.157 5 C -0.144 4.144 6 C -0.126 4.126 7 H 0.136 0.864 8 C 0.302 3.698 9 O -0.457 6.457 10 N -0.372 5.372 11 C 0.014 3.986 12 C -0.097 4.097 13 C -0.157 4.157 14 C 0.052 3.948 15 N -0.336 5.336 16 C -0.393 4.393 17 H 0.080 0.920 18 C -0.245 4.245 19 N -0.579 5.579 20 Si 0.792 3.208 21 H -0.214 1.214 22 H -0.220 1.220 23 H -0.195 1.195 24 C 0.016 3.984 25 C -0.155 4.155 26 C -0.127 4.127 27 C -0.120 4.120 28 H 0.083 0.917 29 C -0.199 4.199 30 H 0.053 0.947 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.053 0.947 35 H 0.115 0.885 36 H 0.091 0.909 37 H 0.246 0.754 38 H 0.066 0.934 39 H 0.083 0.917 40 H 0.095 0.905 41 H 0.060 0.940 42 H 0.089 0.911 43 H 0.018 0.982 44 H 0.068 0.932 45 H 0.059 0.941 46 H 0.035 0.965 47 H 0.070 0.930 48 H 0.101 0.899 49 H 0.071 0.929 50 H 0.073 0.927 51 H 0.107 0.893 52 H 0.072 0.928 53 H 0.064 0.936 54 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.167 16.132 17.260 23.626 hybrid contribution -0.417 -0.658 -1.426 1.625 sum -0.584 15.474 15.834 22.147 Atomic orbital electron populations 1.21878 0.95758 1.00841 1.02095 1.21147 0.95258 0.99652 0.93947 0.89880 1.21637 0.96114 0.99629 0.98366 1.21557 0.95168 1.02128 0.95585 1.21451 1.02708 0.89892 0.98545 0.86362 1.21192 0.79278 0.88484 0.80819 1.90612 1.39447 1.78108 1.37493 1.46069 1.53521 1.12049 1.25552 1.21213 0.98190 0.81652 0.97539 1.21154 1.00371 0.95117 0.93051 1.22013 0.99396 0.98886 0.95399 1.20584 0.95714 0.83074 0.95445 1.44345 1.66403 1.04496 1.18374 1.19506 1.22236 1.10318 0.87250 0.91958 1.25739 0.99319 1.00824 0.98614 1.70176 1.32593 1.37659 1.17423 0.85316 0.78848 0.78276 0.78402 1.21374 1.22021 1.19463 1.21043 0.95720 0.95149 0.86503 1.21858 1.00668 0.94722 0.98247 1.21368 0.95313 1.00469 0.95585 1.21360 0.95555 1.00267 0.94789 0.91698 1.21817 1.00880 1.00428 0.96819 0.94690 0.91665 0.92322 0.91129 0.94745 0.88467 0.90875 0.75395 0.93371 0.91711 0.90485 0.94003 0.91084 0.98153 0.93217 0.94108 0.96476 0.93050 0.89918 0.92947 0.92710 0.89269 0.92779 0.93551 0.91668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 8.84 71.98 0.64 -1.98 16 2 C -0.08 -1.39 2.25 -10.79 -0.02 -1.42 16 3 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 4 C -0.12 -2.20 4.98 30.59 0.15 -2.05 16 5 C -0.11 -1.53 5.35 30.59 0.16 -1.36 16 6 C -0.10 -1.72 3.01 -11.54 -0.03 -1.76 16 7 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 8 C 0.51 12.34 5.64 87.66 0.49 12.83 16 9 O -0.58 -18.24 13.66 -3.05 -0.04 -18.28 16 10 N -0.72 -16.36 5.16 -463.04 -2.39 -18.75 16 11 C 0.14 3.67 5.06 86.38 0.44 4.10 16 12 C -0.08 -2.30 2.19 -10.77 -0.02 -2.32 16 13 C -0.12 -4.12 5.25 30.67 0.16 -3.96 16 14 C 0.18 8.27 5.31 86.37 0.46 8.73 16 15 N -0.61 -30.49 2.99 -699.09 -2.09 -32.59 16 16 C -0.26 -14.53 9.58 84.03 0.81 -13.73 16 17 H 0.06 3.40 7.89 -2.91 -0.02 3.37 16 18 C -0.05 -2.77 4.90 84.86 0.42 -2.35 16 19 N -0.93 -54.75 11.22 21.65 0.24 -54.51 16 20 Si 0.96 45.02 29.59 68.60 2.03 47.05 16 21 H -0.29 -13.25 7.11 99.48 0.71 -12.55 16 22 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 23 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 24 C 0.14 5.73 6.52 86.36 0.56 6.29 16 25 C -0.12 -3.70 5.36 30.67 0.16 -3.53 16 26 C -0.09 -1.50 4.37 30.59 0.13 -1.37 16 27 C -0.10 -1.98 1.95 -10.80 -0.02 -2.00 16 28 H 0.06 1.78 5.51 -2.39 -0.01 1.77 16 29 C -0.14 -2.37 8.84 71.98 0.64 -1.73 16 30 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.06 1.01 6.43 -2.39 -0.02 1.00 16 32 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 34 H 0.03 0.83 7.22 -2.39 -0.02 0.81 16 35 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.07 1.00 7.57 -2.39 -0.02 0.98 16 37 H 0.41 7.74 7.07 -92.71 -0.66 7.08 16 38 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.08 2.19 8.14 -2.38 -0.02 2.17 16 41 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.07 2.10 7.15 -2.39 -0.02 2.09 16 43 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 44 H 0.05 2.67 6.06 -2.39 -0.01 2.65 16 45 H 0.25 14.19 8.31 -92.70 -0.77 13.42 16 46 H 0.02 0.70 8.14 -2.38 -0.02 0.68 16 47 H 0.05 2.07 7.93 -2.39 -0.02 2.05 16 48 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 49 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 50 H 0.05 1.05 8.10 -2.39 -0.02 1.03 16 51 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 52 H 0.05 0.89 6.43 -2.39 -0.02 0.87 16 53 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 54 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 Total: -1.00 -67.11 397.44 3.06 -64.05 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: 0.19 Total: 20.63 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: 5.12 Total: -7.61 kcal Atomic # 7 Polarization: -101.61 SS G_CDS: -4.24 Total: -105.85 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: -0.04 Total: -18.28 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -67.11 3.06 -64.05 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449942330.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.786 kcal (2) G-P(sol) polarization free energy of solvation -67.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds