Wall clock time and date at job start Tue Mar 31 2020 15:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09005 * 109.47595 * 2 1 4 4 C 1.53005 * 109.47041 * 240.00194 * 2 1 3 5 5 C 1.53001 * 109.47150 * 180.02562 * 4 2 1 6 6 C 1.53003 * 109.47220 * 59.99858 * 5 4 2 7 7 H 1.08997 * 109.46624 * 60.00159 * 6 5 4 8 8 C 1.50699 * 109.46784 * 179.97438 * 6 5 4 9 9 O 1.21283 * 119.99615 * 120.00461 * 8 6 5 10 10 N 1.34771 * 120.00180 * 299.99737 * 8 6 5 11 11 C 1.46502 * 119.99917 * 180.28075 * 10 8 6 12 12 C 1.52999 * 109.47150 * 179.72709 * 11 10 8 13 13 C 1.53043 * 109.45905 * 295.02611 * 12 11 10 14 14 C 1.53200 * 109.31059 * 178.60073 * 13 12 11 15 15 N 1.46923 * 108.76483 * 54.65778 * 14 13 12 16 16 C 1.36927 * 120.63445 * 126.36056 * 15 14 13 17 17 H 1.08010 * 120.00090 * 331.86174 * 16 15 14 18 18 C 1.38815 * 120.00680 * 151.86078 * 16 15 14 19 19 N 1.31626 * 119.99324 * 343.06374 * 18 16 15 20 20 Si 1.86799 * 120.00450 * 163.06257 * 18 16 15 21 21 H 1.48501 * 109.47006 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47122 * 120.00016 * 20 18 16 23 23 H 1.48494 * 109.46898 * 239.99971 * 20 18 16 24 24 C 1.46935 * 118.73503 * 306.37951 * 15 14 13 25 25 C 1.53044 * 109.46029 * 174.97063 * 12 11 10 26 26 C 1.52995 * 109.46810 * 300.00234 * 6 5 4 27 27 C 1.52994 * 109.47368 * 119.99982 * 2 1 3 28 28 H 1.09003 * 109.46886 * 60.00029 * 27 2 1 29 29 C 1.52991 * 109.47343 * 300.00082 * 27 2 1 30 30 H 1.09005 * 109.47343 * 299.99714 * 1 2 3 31 31 H 1.09001 * 109.47439 * 59.99559 * 1 2 3 32 32 H 1.09005 * 109.47595 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47131 * 299.99920 * 4 2 1 34 34 H 1.08999 * 109.47169 * 60.00242 * 4 2 1 35 35 H 1.09003 * 109.47035 * 299.99975 * 5 4 2 36 36 H 1.08999 * 109.47030 * 180.02562 * 5 4 2 37 37 H 0.97005 * 120.00025 * 0.02562 * 10 8 6 38 38 H 1.09002 * 109.47070 * 299.72591 * 11 10 8 39 39 H 1.08997 * 109.47400 * 59.72409 * 11 10 8 40 40 H 1.09003 * 109.46207 * 55.00114 * 12 11 10 41 41 H 1.09000 * 109.49413 * 298.56653 * 13 12 11 42 42 H 1.08995 * 109.50000 * 58.66359 * 13 12 11 43 43 H 1.08999 * 109.59774 * 294.86556 * 14 13 12 44 44 H 1.09002 * 109.69863 * 174.50488 * 14 13 12 45 45 H 0.96994 * 119.99415 * 179.97438 * 19 18 16 46 46 H 1.09000 * 109.58725 * 293.82006 * 24 15 14 47 47 H 1.09003 * 109.69628 * 173.46769 * 24 15 14 48 48 H 1.08999 * 109.49569 * 301.33783 * 25 12 11 49 49 H 1.08995 * 109.49685 * 61.43428 * 25 12 11 50 50 H 1.09004 * 109.46811 * 180.02562 * 26 6 5 51 51 H 1.09003 * 109.47226 * 299.99749 * 26 6 5 52 52 H 1.09003 * 109.47086 * 299.99824 * 29 27 2 53 53 H 1.09002 * 109.47152 * 59.99891 * 29 27 2 54 54 H 1.09002 * 109.47672 * 179.97438 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5699 -0.7218 -1.2490 6 6 4.0794 -1.4435 0.0002 7 1 3.7157 -2.4709 -0.0001 8 6 5.5864 -1.4445 0.0001 9 8 6.1932 -0.9198 0.9098 10 7 6.2598 -2.0286 -1.0107 11 6 7.7248 -2.0350 -1.0077 12 6 8.2343 -2.7614 -2.2541 13 6 7.8221 -4.2339 -2.1902 14 6 8.3036 -4.9501 -3.4561 15 7 9.7497 -4.7342 -3.6002 16 6 10.6023 -5.7954 -3.7476 17 1 10.3463 -6.7564 -3.3262 18 6 11.7957 -5.6364 -4.4386 19 7 11.9660 -4.5962 -5.2269 20 14 13.1598 -6.8985 -4.2496 21 1 12.7215 -7.9647 -3.3135 22 1 13.4665 -7.4979 -5.5732 23 1 14.3756 -6.2364 -3.7124 24 6 10.2636 -3.3578 -3.5828 25 6 9.7601 -2.6594 -2.3158 26 6 3.5694 -0.7222 1.2494 27 6 2.0400 -0.7212 1.2492 28 1 1.6766 -1.7489 1.2491 29 6 1.5300 -0.0001 2.4984 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 1.6766 -1.7489 -1.2493 34 1 1.6766 -0.2074 -2.1393 35 1 3.9336 0.3058 -1.2488 36 1 3.9332 -1.2352 -2.1392 37 1 5.7745 -2.4480 -1.7384 38 1 8.0926 -1.0089 -1.0093 39 1 8.0841 -2.5482 -0.1157 40 1 7.8034 -2.3019 -3.1437 41 1 8.2731 -4.7001 -1.3143 42 1 6.7366 -4.3053 -2.1226 43 1 7.7851 -4.5448 -4.3250 44 1 8.0999 -6.0177 -3.3741 45 1 12.8000 -4.4849 -5.7094 46 1 9.9051 -2.8227 -4.4622 47 1 11.3536 -3.3726 -3.5833 48 1 10.0539 -1.6100 -2.3376 49 1 10.1926 -3.1407 -1.4387 50 1 3.9328 -1.2361 2.1394 51 1 3.9331 0.3053 1.2497 52 1 1.8934 1.0276 2.4984 53 1 0.4400 -0.0001 2.4984 54 1 1.8930 -0.5141 3.3884 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449942331.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:32:03 Heat of formation + Delta-G solvation = -81.483242 kcal Electronic energy + Delta-G solvation = -28052.509426 eV Core-core repulsion = 24407.840554 eV Total energy + Delta-G solvation = -3644.668872 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.34669 -39.73328 -39.01352 -36.40369 -34.66959 -33.99122 -32.86851 -32.45012 -31.39571 -28.83681 -28.15883 -26.77768 -25.56022 -23.90040 -23.22780 -22.64354 -22.43180 -21.07127 -20.59958 -20.53212 -18.71781 -17.91236 -17.08409 -16.80701 -16.47977 -15.80580 -15.71036 -15.48164 -15.31008 -15.19540 -14.96853 -14.87935 -14.83261 -14.56843 -14.03128 -13.83976 -13.62503 -13.49052 -13.30029 -13.01718 -12.91930 -12.81026 -12.65959 -12.61013 -12.59495 -12.33123 -12.24495 -11.99113 -11.85226 -11.83383 -11.81038 -11.62008 -11.42095 -11.25605 -11.15793 -11.10934 -10.82838 -10.60668 -10.51953 -10.04915 -8.66977 -7.87673 -5.32492 1.44731 1.47121 1.57163 1.66721 2.24306 2.50796 3.26812 3.63165 3.70766 3.71128 3.74166 3.84688 3.94429 4.07498 4.10312 4.12772 4.24463 4.38710 4.51669 4.51768 4.53834 4.56410 4.63331 4.69254 4.73004 4.75167 4.78536 4.85243 4.93093 4.94023 4.96311 5.02132 5.02513 5.13860 5.15693 5.17943 5.20397 5.23982 5.28541 5.29932 5.34249 5.36092 5.39595 5.46961 5.49588 5.55569 5.57526 5.66008 5.68298 5.78760 6.39952 6.59566 7.15617 7.28594 7.88043 8.38668 9.18577 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.032481 B = 0.002101 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.824025 B =13321.336184 C =13575.295509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.088 4.088 3 H 0.060 0.940 4 C -0.109 4.109 5 C -0.108 4.108 6 C -0.098 4.098 7 H 0.117 0.883 8 C 0.511 3.489 9 O -0.590 6.590 10 N -0.714 5.714 11 C 0.136 3.864 12 C -0.077 4.077 13 C -0.113 4.113 14 C 0.140 3.860 15 N -0.613 5.613 16 C -0.259 4.259 17 H 0.065 0.935 18 C -0.053 4.053 19 N -0.935 5.935 20 Si 0.964 3.036 21 H -0.267 1.267 22 H -0.292 1.292 23 H -0.291 1.291 24 C 0.178 3.822 25 C -0.123 4.123 26 C -0.090 4.090 27 C -0.081 4.081 28 H 0.078 0.922 29 C -0.149 4.149 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.055 0.945 36 H 0.080 0.920 37 H 0.413 0.587 38 H 0.058 0.942 39 H 0.052 0.948 40 H 0.077 0.923 41 H 0.048 0.952 42 H 0.086 0.914 43 H 0.019 0.981 44 H 0.052 0.948 45 H 0.249 0.751 46 H -0.001 1.001 47 H 0.050 0.950 48 H 0.067 0.933 49 H 0.048 0.952 50 H 0.053 0.947 51 H 0.050 0.950 52 H 0.048 0.952 53 H 0.069 0.931 54 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.944 8.938 10.259 28.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.107 4.107 3 H 0.079 0.921 4 C -0.146 4.146 5 C -0.145 4.145 6 C -0.119 4.119 7 H 0.134 0.866 8 C 0.299 3.701 9 O -0.471 6.471 10 N -0.366 5.366 11 C 0.012 3.988 12 C -0.096 4.096 13 C -0.152 4.152 14 C 0.014 3.986 15 N -0.336 5.336 16 C -0.390 4.390 17 H 0.082 0.918 18 C -0.248 4.248 19 N -0.581 5.581 20 Si 0.793 3.207 21 H -0.192 1.192 22 H -0.219 1.219 23 H -0.218 1.218 24 C 0.052 3.948 25 C -0.163 4.163 26 C -0.128 4.128 27 C -0.100 4.100 28 H 0.097 0.903 29 C -0.206 4.206 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.074 0.926 36 H 0.099 0.901 37 H 0.251 0.749 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.096 0.904 41 H 0.067 0.933 42 H 0.104 0.896 43 H 0.037 0.963 44 H 0.070 0.930 45 H 0.058 0.942 46 H 0.017 0.983 47 H 0.069 0.931 48 H 0.086 0.914 49 H 0.067 0.933 50 H 0.072 0.928 51 H 0.069 0.931 52 H 0.067 0.933 53 H 0.088 0.912 54 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -24.382 9.318 10.799 28.248 hybrid contribution 1.359 -0.675 -0.490 1.595 sum -23.023 8.642 10.308 26.665 Atomic orbital electron populations 1.21864 0.94329 1.02213 1.01970 1.21182 0.96151 0.99143 0.94207 0.92105 1.21582 0.93427 1.01732 0.97876 1.21535 0.97169 1.00269 0.95573 1.21375 0.88694 1.03380 0.98474 0.86560 1.21314 0.91352 0.76636 0.80821 1.90674 1.71634 1.47052 1.37691 1.46005 1.07024 1.58112 1.25495 1.21235 0.79955 0.99855 0.97797 1.21135 0.95543 0.95916 0.96966 1.21922 1.00587 0.94558 0.98154 1.21082 0.83955 0.98269 0.95253 1.44341 1.02027 1.02409 1.84850 1.19530 1.00300 0.92041 1.27116 0.91757 1.25789 1.02330 0.99986 0.96727 1.70184 1.25542 1.32349 1.30034 0.85249 0.79374 0.78907 0.77186 1.19165 1.21872 1.21797 1.20557 0.98102 0.83623 0.92532 1.21985 0.95280 0.99896 0.99093 1.21340 0.95708 0.99948 0.95849 1.21133 0.93230 1.00375 0.95213 0.90331 1.21876 1.01662 1.00116 0.96944 0.92245 0.92461 0.92219 0.90583 0.90762 0.92618 0.90103 0.74936 0.92356 0.92921 0.90420 0.93286 0.89592 0.96274 0.92990 0.94163 0.98284 0.93143 0.91434 0.93290 0.92823 0.93146 0.93275 0.91172 0.93049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 8.84 71.98 0.64 -0.63 16 2 C -0.09 -0.97 2.25 -10.80 -0.02 -0.99 16 3 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 4 C -0.11 -1.08 5.20 30.60 0.16 -0.92 16 5 C -0.11 -1.38 5.10 30.60 0.16 -1.22 16 6 C -0.10 -1.59 2.53 -11.54 -0.03 -1.62 16 7 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 8 C 0.51 12.29 7.15 87.66 0.63 12.91 16 9 O -0.59 -19.69 15.98 -3.04 -0.05 -19.74 16 10 N -0.71 -15.40 5.16 -463.07 -2.39 -17.79 16 11 C 0.14 3.62 5.06 86.38 0.44 4.06 16 12 C -0.08 -2.25 2.19 -10.76 -0.02 -2.27 16 13 C -0.11 -3.41 5.25 30.68 0.16 -3.25 16 14 C 0.14 5.46 6.52 86.37 0.56 6.03 16 15 N -0.61 -30.38 2.99 -699.06 -2.09 -32.47 16 16 C -0.26 -14.29 9.58 84.04 0.81 -13.49 16 17 H 0.06 3.47 7.89 -2.91 -0.02 3.45 16 18 C -0.05 -2.98 4.92 84.86 0.42 -2.57 16 19 N -0.93 -55.50 11.20 21.65 0.24 -55.26 16 20 Si 0.96 45.19 29.59 68.60 2.03 47.22 16 21 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 22 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 23 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 24 C 0.18 8.48 5.30 86.36 0.46 8.93 16 25 C -0.12 -4.50 5.36 30.67 0.16 -4.33 16 26 C -0.09 -1.60 3.77 30.57 0.12 -1.49 16 27 C -0.08 -1.01 2.24 -10.82 -0.02 -1.04 16 28 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 29 C -0.15 -1.79 8.84 71.98 0.64 -1.15 16 30 H 0.06 0.50 6.43 -2.38 -0.02 0.48 16 31 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.06 0.47 8.14 -2.38 -0.02 0.45 16 33 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.08 0.86 7.56 -2.39 -0.02 0.84 16 37 H 0.41 6.64 7.07 -92.70 -0.66 5.99 16 38 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 41 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.09 1.94 7.15 -2.39 -0.02 1.93 16 43 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.05 2.01 7.93 -2.39 -0.02 1.99 16 45 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 46 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 47 H 0.05 2.77 6.06 -2.39 -0.01 2.75 16 48 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 49 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 50 H 0.05 1.10 8.10 -2.38 -0.02 1.09 16 51 H 0.05 1.07 8.10 -2.39 -0.02 1.05 16 52 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 53 H 0.07 0.67 6.43 -2.39 -0.02 0.65 16 54 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 Total: -1.00 -68.57 403.94 3.16 -65.41 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: 0.18 Total: 15.67 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: 5.24 Total: -3.03 kcal Atomic # 7 Polarization: -101.28 SS G_CDS: -4.24 Total: -105.52 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: -0.05 Total: -19.74 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -68.57 3.16 -65.41 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449942331.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.076 kcal (2) G-P(sol) polarization free energy of solvation -68.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds