Wall clock time and date at job start Tue Mar 31 2020 15:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.46960 * 2 1 4 4 C 1.52995 * 109.47087 * 240.00370 * 2 1 3 5 5 C 1.53003 * 109.47087 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.47093 * 59.99655 * 5 4 2 7 7 H 1.09002 * 109.47238 * 60.00145 * 6 5 4 8 8 C 1.50701 * 109.46930 * 180.02562 * 6 5 4 9 9 O 1.21277 * 119.99901 * 119.99520 * 8 6 5 10 10 N 1.34779 * 119.99976 * 299.99866 * 8 6 5 11 11 C 1.46502 * 119.99842 * 180.02562 * 10 8 6 12 12 C 1.52995 * 109.47031 * 180.02562 * 11 10 8 13 13 C 1.53042 * 109.45736 * 295.06282 * 12 11 10 14 14 C 1.53191 * 109.31516 * 178.61344 * 13 12 11 15 15 N 1.46930 * 108.77328 * 54.63512 * 14 13 12 16 16 C 1.36945 * 120.62792 * 126.41137 * 15 14 13 17 17 H 1.08002 * 119.99947 * 207.66547 * 16 15 14 18 18 C 1.38807 * 119.99732 * 27.66733 * 16 15 14 19 19 N 1.31615 * 120.00342 * 17.36676 * 18 16 15 20 20 Si 1.86802 * 119.99871 * 197.36541 * 18 16 15 21 21 H 1.48498 * 109.47322 * 60.00271 * 20 18 16 22 22 H 1.48499 * 109.47356 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47081 * 299.99976 * 20 18 16 24 24 C 1.46919 * 118.74326 * 306.39741 * 15 14 13 25 25 C 1.53040 * 109.46064 * 174.99984 * 12 11 10 26 26 C 1.53001 * 109.46985 * 299.99973 * 6 5 4 27 27 C 1.52994 * 109.47177 * 60.00273 * 26 6 5 28 28 H 1.08997 * 109.47482 * 179.97438 * 27 26 6 29 29 C 1.53005 * 109.47267 * 59.99868 * 27 26 6 30 30 H 1.09002 * 109.46960 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46759 * 300.00250 * 1 2 3 32 32 H 1.09002 * 109.47064 * 60.00109 * 1 2 3 33 33 H 1.08999 * 109.47783 * 59.99340 * 4 2 1 34 34 H 1.09002 * 109.46919 * 299.99655 * 4 2 1 35 35 H 1.09002 * 109.46960 * 299.99630 * 5 4 2 36 36 H 1.09006 * 109.46717 * 179.97438 * 5 4 2 37 37 H 0.96996 * 119.99975 * 0.02562 * 10 8 6 38 38 H 1.09002 * 109.47068 * 300.00077 * 11 10 8 39 39 H 1.08999 * 109.47296 * 59.99555 * 11 10 8 40 40 H 1.08995 * 109.46614 * 55.02565 * 12 11 10 41 41 H 1.08996 * 109.50065 * 298.57057 * 13 12 11 42 42 H 1.09002 * 109.49807 * 58.66925 * 13 12 11 43 43 H 1.09001 * 109.59087 * 294.85515 * 14 13 12 44 44 H 1.08999 * 109.58915 * 174.42348 * 14 13 12 45 45 H 0.97001 * 120.00197 * 179.97438 * 19 18 16 46 46 H 1.08999 * 109.58355 * 293.81811 * 24 15 14 47 47 H 1.08996 * 109.71047 * 173.46120 * 24 15 14 48 48 H 1.09000 * 109.49764 * 301.33548 * 25 12 11 49 49 H 1.09000 * 109.49729 * 61.43228 * 25 12 11 50 50 H 1.08995 * 109.46737 * 180.02562 * 26 6 5 51 51 H 1.09002 * 109.47273 * 300.00151 * 26 6 5 52 52 H 1.09003 * 109.46773 * 299.99735 * 29 27 26 53 53 H 1.08995 * 109.47257 * 59.99777 * 29 27 26 54 54 H 1.08998 * 109.46871 * 180.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2492 5 6 3.5700 -0.7217 -1.2489 6 6 4.0795 -1.4433 0.0003 7 1 3.7158 -2.4709 0.0001 8 6 5.5865 -1.4433 0.0009 9 8 6.1925 -0.9184 0.9109 10 7 6.2608 -2.0266 -1.0098 11 6 7.7258 -2.0271 -1.0089 12 6 8.2363 -2.7473 -2.2585 13 6 7.8294 -4.2214 -2.1993 14 6 8.3121 -4.9317 -3.4679 15 7 9.7572 -4.7099 -3.6132 16 6 10.6135 -5.7677 -3.7662 17 1 11.6384 -5.6849 -3.4359 18 6 10.1640 -6.9462 -4.3457 19 7 9.0517 -6.9512 -5.0492 20 14 11.1380 -8.5252 -4.1272 21 1 11.2354 -8.8507 -2.6816 22 1 10.4516 -9.6328 -4.8393 23 1 12.5017 -8.3471 -4.6875 24 6 10.2663 -3.3319 -3.5917 25 6 9.7616 -2.6396 -2.3217 26 6 3.5695 -0.7221 1.2496 27 6 2.0395 -0.7215 1.2493 28 1 1.6762 -0.2081 2.1394 29 6 1.5290 -2.1639 1.2490 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.6766 -0.2074 -2.1393 34 1 1.6767 -1.7488 -1.2492 35 1 3.9337 0.3059 -1.2487 36 1 3.9333 -1.2359 -2.1388 37 1 5.7761 -2.4461 -1.7378 38 1 8.0895 -0.9995 -1.0082 39 1 8.0885 -2.5414 -0.1190 40 1 7.8027 -2.2865 -3.1460 41 1 8.2830 -4.6893 -1.3255 42 1 6.7442 -4.2969 -2.1308 43 1 7.7911 -4.5253 -4.3349 44 1 8.1126 -6.0002 -3.3868 45 1 8.7378 -7.7747 -5.4545 46 1 9.9047 -2.7951 -4.4687 47 1 11.3562 -3.3426 -3.5935 48 1 10.0517 -1.5890 -2.3402 49 1 10.1970 -3.1223 -1.4468 50 1 3.9328 -1.2359 2.1395 51 1 3.9332 0.3055 1.2498 52 1 1.8923 -2.6777 0.3589 53 1 1.8920 -2.6780 2.1389 54 1 0.4390 -2.1635 1.2483 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449942332.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:32:07 Heat of formation + Delta-G solvation = -76.850016 kcal Electronic energy + Delta-G solvation = -28333.196378 eV Core-core repulsion = 24688.728418 eV Total energy + Delta-G solvation = -3644.467960 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.45687 -39.84465 -39.08542 -36.39099 -34.62850 -33.82293 -32.62184 -32.24614 -31.51504 -28.88431 -28.29061 -26.90813 -25.57594 -23.88959 -23.32402 -23.18490 -22.40458 -21.20978 -20.58759 -19.33129 -18.75364 -18.19812 -17.08496 -16.81770 -16.58536 -16.00144 -15.77981 -15.42648 -15.30857 -15.19725 -14.98271 -14.87782 -14.68371 -14.20305 -14.00349 -13.97005 -13.75168 -13.48832 -13.36452 -13.19941 -13.07370 -12.82110 -12.74504 -12.54732 -12.54245 -12.32609 -12.14419 -11.97732 -11.97132 -11.84318 -11.66534 -11.60826 -11.34538 -11.21945 -11.13141 -11.02484 -10.80258 -10.61019 -10.52140 -10.04495 -8.66846 -7.87234 -5.31302 1.46268 1.48417 1.55076 1.65930 2.25332 2.51404 3.26838 3.61764 3.68741 3.71529 3.75815 3.85651 3.95840 4.05881 4.11793 4.18557 4.25745 4.37728 4.44885 4.50105 4.53005 4.54686 4.58340 4.68672 4.73941 4.75809 4.79791 4.80243 4.92890 4.94282 5.01323 5.03880 5.06973 5.11798 5.16711 5.17911 5.21408 5.24233 5.25704 5.29374 5.31041 5.39887 5.41857 5.44965 5.50649 5.53728 5.57014 5.66817 5.71526 5.79842 6.40204 6.57914 7.16424 7.26856 7.88620 8.38931 9.18709 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.020696 B = 0.002375 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.607930 B =11787.445943 C =12326.859709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.088 4.088 3 H 0.063 0.937 4 C -0.111 4.111 5 C -0.107 4.107 6 C -0.100 4.100 7 H 0.113 0.887 8 C 0.511 3.489 9 O -0.588 6.588 10 N -0.717 5.717 11 C 0.135 3.865 12 C -0.078 4.078 13 C -0.120 4.120 14 C 0.176 3.824 15 N -0.613 5.613 16 C -0.263 4.263 17 H 0.063 0.937 18 C -0.050 4.050 19 N -0.933 5.933 20 Si 0.964 3.036 21 H -0.281 1.281 22 H -0.293 1.293 23 H -0.276 1.276 24 C 0.141 3.859 25 C -0.116 4.116 26 C -0.090 4.090 27 C -0.081 4.081 28 H 0.073 0.927 29 C -0.154 4.154 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.059 0.941 36 H 0.077 0.923 37 H 0.411 0.589 38 H 0.065 0.935 39 H 0.051 0.949 40 H 0.077 0.923 41 H 0.043 0.957 42 H 0.071 0.929 43 H 0.001 0.999 44 H 0.051 0.949 45 H 0.250 0.750 46 H 0.017 0.983 47 H 0.051 0.949 48 H 0.083 0.917 49 H 0.053 0.947 50 H 0.053 0.947 51 H 0.053 0.947 52 H 0.063 0.937 53 H 0.048 0.952 54 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.052 14.004 9.433 24.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.106 4.106 3 H 0.082 0.918 4 C -0.149 4.149 5 C -0.145 4.145 6 C -0.121 4.121 7 H 0.131 0.869 8 C 0.299 3.701 9 O -0.469 6.469 10 N -0.369 5.369 11 C 0.011 3.989 12 C -0.096 4.096 13 C -0.159 4.159 14 C 0.051 3.949 15 N -0.336 5.336 16 C -0.394 4.394 17 H 0.081 0.919 18 C -0.246 4.246 19 N -0.579 5.579 20 Si 0.792 3.208 21 H -0.207 1.207 22 H -0.219 1.219 23 H -0.202 1.202 24 C 0.016 3.984 25 C -0.155 4.155 26 C -0.128 4.128 27 C -0.100 4.100 28 H 0.091 0.909 29 C -0.211 4.211 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.096 0.904 37 H 0.248 0.752 38 H 0.084 0.916 39 H 0.069 0.931 40 H 0.096 0.904 41 H 0.061 0.939 42 H 0.090 0.910 43 H 0.019 0.981 44 H 0.069 0.931 45 H 0.059 0.941 46 H 0.035 0.965 47 H 0.070 0.930 48 H 0.101 0.899 49 H 0.071 0.929 50 H 0.071 0.929 51 H 0.072 0.928 52 H 0.082 0.918 53 H 0.068 0.932 54 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -17.661 14.241 9.972 24.782 hybrid contribution 0.689 -1.257 -0.410 1.491 sum -16.972 12.984 9.562 23.411 Atomic orbital electron populations 1.21866 0.94369 1.02343 1.01817 1.21150 0.96120 0.99010 0.94334 0.91832 1.21622 0.93480 1.01837 0.97925 1.21528 0.97171 1.00361 0.95438 1.21407 0.88772 1.03337 0.98609 0.86937 1.21291 0.91316 0.76642 0.80822 1.90661 1.71636 1.47086 1.37514 1.46054 1.07294 1.58056 1.25472 1.21272 0.79806 1.00079 0.97717 1.21151 0.96362 0.95150 0.96987 1.22035 0.99920 0.95295 0.98630 1.20605 0.82972 0.98717 0.92645 1.44345 1.03431 1.01326 1.84548 1.19464 0.94609 0.92885 1.32419 0.91923 1.25740 0.99266 1.02119 0.97437 1.70162 1.25393 1.26840 1.35513 0.85397 0.78268 0.79523 0.77606 1.20676 1.21880 1.20189 1.21037 0.97238 0.84996 0.95156 1.21863 0.94575 1.00550 0.98539 1.21313 0.95712 0.99958 0.95827 1.21108 0.93255 0.97191 0.98425 0.90895 1.22017 1.01665 0.95488 1.01940 0.91879 0.92668 0.92407 0.90779 0.90585 0.92260 0.90392 0.75177 0.91630 0.93065 0.90418 0.93861 0.91034 0.98122 0.93064 0.94094 0.96501 0.93015 0.89885 0.92863 0.92858 0.92821 0.91840 0.93243 0.91382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 8.84 71.98 0.64 -0.77 16 2 C -0.09 -1.03 2.50 -10.79 -0.03 -1.06 16 3 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 4 C -0.11 -1.26 4.93 30.59 0.15 -1.11 16 5 C -0.11 -1.52 5.10 30.60 0.16 -1.36 16 6 C -0.10 -1.78 2.25 -11.54 -0.03 -1.81 16 7 H 0.11 1.72 6.43 -2.39 -0.02 1.70 16 8 C 0.51 12.86 7.15 87.66 0.63 13.49 16 9 O -0.59 -19.81 15.98 -3.02 -0.05 -19.86 16 10 N -0.72 -16.55 5.16 -463.06 -2.39 -18.95 16 11 C 0.14 3.60 5.06 86.38 0.44 4.04 16 12 C -0.08 -2.28 2.19 -10.77 -0.02 -2.30 16 13 C -0.12 -4.17 5.25 30.67 0.16 -4.01 16 14 C 0.18 8.20 5.31 86.36 0.46 8.65 16 15 N -0.61 -30.45 3.00 -699.10 -2.09 -32.55 16 16 C -0.26 -14.54 9.59 84.03 0.81 -13.73 16 17 H 0.06 3.39 7.89 -2.91 -0.02 3.37 16 18 C -0.05 -2.80 4.91 84.86 0.42 -2.39 16 19 N -0.93 -54.70 11.19 21.65 0.24 -54.46 16 20 Si 0.96 44.92 29.59 68.60 2.03 46.95 16 21 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 22 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 23 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 24 C 0.14 5.70 6.51 86.37 0.56 6.26 16 25 C -0.12 -3.69 5.36 30.67 0.16 -3.52 16 26 C -0.09 -1.68 4.02 30.59 0.12 -1.55 16 27 C -0.08 -1.10 2.72 -10.79 -0.03 -1.13 16 28 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 29 C -0.15 -1.85 8.15 71.98 0.59 -1.27 16 30 H 0.06 0.56 6.43 -2.39 -0.02 0.55 16 31 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.08 0.78 6.43 -2.39 -0.02 0.77 16 35 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.08 0.98 7.56 -2.38 -0.02 0.96 16 37 H 0.41 7.77 7.06 -92.71 -0.65 7.12 16 38 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 41 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.07 2.10 7.15 -2.39 -0.02 2.08 16 43 H 0.00 0.03 8.14 -2.39 -0.02 0.02 16 44 H 0.05 2.74 6.04 -2.39 -0.01 2.73 16 45 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 46 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 47 H 0.05 2.07 7.94 -2.39 -0.02 2.05 16 48 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 49 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 50 H 0.05 1.15 8.10 -2.39 -0.02 1.13 16 51 H 0.05 1.15 8.10 -2.39 -0.02 1.13 16 52 H 0.06 0.74 4.81 -2.39 -0.01 0.72 16 53 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 54 H 0.07 0.68 6.43 -2.39 -0.02 0.67 16 Total: -1.00 -67.23 396.86 3.12 -64.11 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: 0.20 Total: 18.32 kcal Atomic # 6 Polarization: -8.75 SS G_CDS: 5.18 Total: -3.57 kcal Atomic # 7 Polarization: -101.71 SS G_CDS: -4.24 Total: -105.95 kcal Atomic # 8 Polarization: -19.81 SS G_CDS: -0.05 Total: -19.86 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -67.23 3.12 -64.11 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449942332.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.740 kcal (2) G-P(sol) polarization free energy of solvation -67.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds