Wall clock time and date at job start Tue Mar 31 2020 15:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.47295 * 2 1 4 4 C 1.52998 * 109.46957 * 240.00142 * 2 1 3 5 5 C 1.53003 * 109.47119 * 299.99864 * 4 2 1 6 6 C 1.52995 * 109.47379 * 300.00164 * 5 4 2 7 7 H 1.09005 * 109.47130 * 299.99965 * 6 5 4 8 8 C 1.50700 * 109.47091 * 179.97438 * 6 5 4 9 9 O 1.21284 * 120.00278 * 239.99641 * 8 6 5 10 10 N 1.34780 * 120.00176 * 60.00006 * 8 6 5 11 11 C 1.46501 * 120.00133 * 179.97438 * 10 8 6 12 12 C 1.52996 * 109.46768 * 180.02562 * 11 10 8 13 13 C 1.53039 * 109.46471 * 295.02996 * 12 11 10 14 14 C 1.53188 * 109.31656 * 178.60648 * 13 12 11 15 15 N 1.46925 * 108.77018 * 54.65464 * 14 13 12 16 16 C 1.36931 * 120.63204 * 126.36121 * 15 14 13 17 17 H 1.08002 * 120.00172 * 208.02405 * 16 15 14 18 18 C 1.38814 * 119.99902 * 28.02710 * 16 15 14 19 19 N 1.31617 * 119.99955 * 17.52080 * 18 16 15 20 20 Si 1.86800 * 119.99796 * 197.52179 * 18 16 15 21 21 H 1.48501 * 109.47078 * 94.06651 * 20 18 16 22 22 H 1.48501 * 109.47089 * 214.06917 * 20 18 16 23 23 H 1.48508 * 109.47118 * 334.06857 * 20 18 16 24 24 C 1.46927 * 118.73452 * 306.38748 * 15 14 13 25 25 C 1.53048 * 109.45750 * 174.98012 * 12 11 10 26 26 C 1.52998 * 109.47128 * 59.99842 * 6 5 4 27 27 C 1.53002 * 109.47291 * 299.99965 * 26 6 5 28 28 H 1.08995 * 109.46819 * 300.00454 * 27 26 6 29 29 C 1.52991 * 109.47008 * 179.97438 * 27 26 6 30 30 H 1.09004 * 109.47650 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47154 * 299.99775 * 1 2 3 32 32 H 1.09003 * 109.47232 * 60.00086 * 1 2 3 33 33 H 1.09000 * 109.47239 * 180.02562 * 4 2 1 34 34 H 1.08993 * 109.47284 * 59.99983 * 4 2 1 35 35 H 1.08997 * 109.47169 * 60.00535 * 5 4 2 36 36 H 1.09000 * 109.46953 * 180.02562 * 5 4 2 37 37 H 0.97003 * 119.99918 * 0.02562 * 10 8 6 38 38 H 1.08993 * 109.47272 * 300.00374 * 11 10 8 39 39 H 1.09000 * 109.46353 * 60.00404 * 11 10 8 40 40 H 1.09001 * 109.46507 * 55.00541 * 12 11 10 41 41 H 1.09000 * 109.49683 * 298.57071 * 13 12 11 42 42 H 1.08999 * 109.49870 * 58.66342 * 13 12 11 43 43 H 1.09007 * 109.59520 * 294.86430 * 14 13 12 44 44 H 1.09003 * 109.70716 * 174.50834 * 14 13 12 45 45 H 0.97002 * 119.99822 * 179.97438 * 19 18 16 46 46 H 1.08994 * 109.59256 * 293.81962 * 24 15 14 47 47 H 1.09003 * 109.70401 * 173.45840 * 24 15 14 48 48 H 1.09005 * 109.49312 * 301.33561 * 25 12 11 49 49 H 1.08993 * 109.50021 * 61.43232 * 25 12 11 50 50 H 1.09005 * 109.47014 * 60.00053 * 26 6 5 51 51 H 1.08996 * 109.47093 * 179.97438 * 26 6 5 52 52 H 1.09003 * 109.47155 * 60.00666 * 29 27 26 53 53 H 1.09005 * 109.47380 * 179.97438 * 29 27 26 54 54 H 1.08995 * 109.48024 * 300.00111 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5299 -2.1637 -1.2493 6 6 2.0399 -2.8850 -0.0001 7 1 3.1299 -2.8851 -0.0001 8 6 1.5370 -4.3057 0.0002 9 8 0.8398 -4.7020 0.9100 10 7 1.8621 -5.1358 -1.0107 11 6 1.3736 -6.5170 -1.0101 12 6 1.8836 -7.2386 -2.2591 13 6 1.2738 -6.5933 -3.5056 14 6 1.8134 -7.2957 -4.7554 15 7 1.5564 -8.7373 -4.6357 16 6 0.8960 -9.4130 -5.6268 17 1 0.3202 -10.2949 -5.3881 18 6 0.9668 -8.9644 -6.9386 19 7 1.9150 -8.1248 -7.2967 20 14 -0.2838 -9.5524 -8.1955 21 1 -1.4012 -8.5776 -8.2753 22 1 0.3676 -9.6687 -9.5249 23 1 -0.8120 -10.8783 -7.7853 24 6 2.0208 -9.4400 -3.4318 25 6 1.4789 -8.7133 -2.1968 26 6 1.5299 -2.1638 1.2492 27 6 2.0400 -0.7213 1.2492 28 1 3.1299 -0.7214 1.2492 29 6 1.5295 0.0000 2.4981 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 3.1299 -0.7216 -1.2491 34 1 1.6766 -0.2074 -2.1392 35 1 0.4399 -2.1638 -1.2493 36 1 1.8936 -2.6777 -2.1390 37 1 2.4200 -4.8190 -1.7382 38 1 1.7373 -7.0306 -0.1202 39 1 0.2836 -6.5168 -1.0097 40 1 2.9699 -7.1618 -2.3050 41 1 0.1888 -6.6919 -3.4726 42 1 1.5427 -5.5374 -3.5372 43 1 2.8863 -7.1214 -4.8382 44 1 1.3109 -6.9073 -5.6413 45 1 1.9647 -7.8116 -8.2134 46 1 3.1104 -9.4407 -3.4065 47 1 1.6548 -10.4667 -3.4414 48 1 1.8940 -9.1667 -1.2966 49 1 0.3920 -8.7918 -2.1762 50 1 0.4399 -2.1638 1.2492 51 1 1.8929 -2.6779 2.1391 52 1 1.8925 -0.5137 3.3883 53 1 1.8932 1.0276 2.4985 54 1 0.4395 0.0001 2.4978 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449942333.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:32:11 Heat of formation + Delta-G solvation = -77.069615 kcal Electronic energy + Delta-G solvation = -28429.212158 eV Core-core repulsion = 24784.734675 eV Total energy + Delta-G solvation = -3644.477483 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.44771 -39.83941 -39.07863 -36.38790 -34.64668 -33.79421 -32.71539 -32.23357 -31.51743 -28.70465 -28.33391 -26.74194 -25.76033 -24.15454 -23.72971 -22.58321 -22.48317 -21.21075 -20.53445 -19.36097 -18.72093 -17.91454 -17.02873 -16.81870 -16.57309 -16.22944 -15.91350 -15.67677 -15.33511 -15.27740 -14.93060 -14.82710 -14.62533 -14.15883 -13.95197 -13.89234 -13.67396 -13.46511 -13.32521 -13.20573 -13.06593 -12.83119 -12.76101 -12.70590 -12.58314 -12.29374 -12.13077 -11.96044 -11.95117 -11.84424 -11.61861 -11.57157 -11.33186 -11.20328 -11.13015 -11.08434 -10.86971 -10.56788 -10.52846 -10.04295 -8.67121 -7.87730 -5.32039 1.45571 1.47316 1.56016 1.66274 2.25619 2.50909 3.26289 3.62521 3.70450 3.71289 3.76885 3.85600 3.95573 4.05864 4.11754 4.17518 4.27351 4.33593 4.44279 4.52805 4.54377 4.57506 4.65344 4.68622 4.73096 4.73850 4.77166 4.81635 4.86648 4.92678 4.97736 5.03576 5.04506 5.16023 5.17192 5.18385 5.19695 5.21293 5.25328 5.29297 5.35336 5.41091 5.41583 5.45866 5.50124 5.52108 5.56680 5.66690 5.70608 5.79541 6.39986 6.58292 7.16071 7.27299 7.88089 8.38682 9.18344 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.020077 B = 0.002485 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.313611 B =11267.104517 C =12137.506470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.085 4.085 3 H 0.081 0.919 4 C -0.110 4.110 5 C -0.112 4.112 6 C -0.098 4.098 7 H 0.116 0.884 8 C 0.511 3.489 9 O -0.588 6.588 10 N -0.717 5.717 11 C 0.135 3.865 12 C -0.078 4.078 13 C -0.119 4.119 14 C 0.176 3.824 15 N -0.613 5.613 16 C -0.262 4.262 17 H 0.063 0.937 18 C -0.050 4.050 19 N -0.933 5.933 20 Si 0.963 3.037 21 H -0.287 1.287 22 H -0.294 1.294 23 H -0.270 1.270 24 C 0.141 3.859 25 C -0.116 4.116 26 C -0.091 4.091 27 C -0.082 4.082 28 H 0.080 0.920 29 C -0.148 4.148 30 H 0.046 0.954 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.057 0.943 36 H 0.074 0.926 37 H 0.411 0.589 38 H 0.066 0.934 39 H 0.051 0.949 40 H 0.077 0.923 41 H 0.043 0.957 42 H 0.071 0.929 43 H 0.001 0.999 44 H 0.050 0.950 45 H 0.250 0.750 46 H 0.017 0.983 47 H 0.051 0.949 48 H 0.083 0.917 49 H 0.053 0.947 50 H 0.054 0.946 51 H 0.054 0.946 52 H 0.051 0.949 53 H 0.065 0.935 54 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.554 17.757 16.604 24.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.104 4.104 3 H 0.100 0.900 4 C -0.147 4.147 5 C -0.149 4.149 6 C -0.119 4.119 7 H 0.134 0.866 8 C 0.299 3.701 9 O -0.468 6.468 10 N -0.369 5.369 11 C 0.011 3.989 12 C -0.097 4.097 13 C -0.158 4.158 14 C 0.051 3.949 15 N -0.336 5.336 16 C -0.392 4.392 17 H 0.081 0.919 18 C -0.246 4.246 19 N -0.579 5.579 20 Si 0.792 3.208 21 H -0.214 1.214 22 H -0.221 1.221 23 H -0.194 1.194 24 C 0.016 3.984 25 C -0.155 4.155 26 C -0.129 4.129 27 C -0.100 4.100 28 H 0.098 0.902 29 C -0.206 4.206 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.248 0.752 38 H 0.084 0.916 39 H 0.069 0.931 40 H 0.096 0.904 41 H 0.061 0.939 42 H 0.090 0.910 43 H 0.019 0.981 44 H 0.068 0.932 45 H 0.059 0.941 46 H 0.035 0.965 47 H 0.070 0.930 48 H 0.101 0.899 49 H 0.071 0.929 50 H 0.073 0.927 51 H 0.073 0.927 52 H 0.070 0.930 53 H 0.084 0.916 54 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.088 17.490 17.087 24.541 hybrid contribution -0.451 -0.567 -1.372 1.551 sum 1.637 16.923 15.716 23.153 Atomic orbital electron populations 1.22003 0.95949 1.01437 1.01790 1.21144 0.95534 0.99546 0.94135 0.90026 1.21559 1.01383 0.93783 0.97995 1.21573 1.00984 0.96807 0.95577 1.21366 1.02921 0.89199 0.98410 0.86600 1.21288 0.79318 0.88616 0.80837 1.90664 1.40023 1.78497 1.37657 1.46060 1.53320 1.12122 1.25399 1.21268 0.98392 0.81499 0.97701 1.21156 1.00406 0.95153 0.92968 1.22022 0.99492 0.98912 0.95361 1.20597 0.95770 0.83080 0.95481 1.44347 1.66366 1.04503 1.18425 1.19503 1.22177 1.10319 0.87228 0.91931 1.25748 0.99335 1.00852 0.98633 1.70174 1.32593 1.37728 1.17392 0.85311 0.78840 0.78283 0.78380 1.21377 1.22052 1.19443 1.21041 0.95722 0.95176 0.86499 1.21863 1.00739 0.94652 0.98259 1.21379 1.00693 0.95208 0.95616 1.21135 1.00558 0.93189 0.95163 0.90199 1.21866 1.01279 1.00521 0.96890 0.93489 0.92230 0.92618 0.90451 0.91029 0.92410 0.90748 0.75184 0.91596 0.93105 0.90440 0.93863 0.91036 0.98137 0.93151 0.94109 0.96499 0.93016 0.89879 0.92853 0.92685 0.92741 0.92953 0.91598 0.92810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 8.15 71.98 0.59 -1.58 16 2 C -0.09 -1.03 2.72 -10.79 -0.03 -1.06 16 3 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 4 C -0.11 -1.31 5.45 30.59 0.17 -1.15 16 5 C -0.11 -1.73 4.82 30.59 0.15 -1.58 16 6 C -0.10 -1.72 2.53 -11.54 -0.03 -1.75 16 7 H 0.12 1.57 8.14 -2.38 -0.02 1.55 16 8 C 0.51 12.79 7.15 87.66 0.63 13.41 16 9 O -0.59 -19.68 15.98 -3.04 -0.05 -19.73 16 10 N -0.72 -16.53 5.16 -463.06 -2.39 -18.92 16 11 C 0.14 3.60 5.06 86.38 0.44 4.04 16 12 C -0.08 -2.29 2.19 -10.77 -0.02 -2.31 16 13 C -0.12 -4.14 5.25 30.67 0.16 -3.97 16 14 C 0.18 8.20 5.31 86.36 0.46 8.66 16 15 N -0.61 -30.44 2.99 -699.09 -2.09 -32.53 16 16 C -0.26 -14.45 9.58 84.03 0.81 -13.65 16 17 H 0.06 3.40 7.89 -2.91 -0.02 3.38 16 18 C -0.05 -2.81 4.90 84.86 0.42 -2.39 16 19 N -0.93 -54.73 11.22 21.65 0.24 -54.49 16 20 Si 0.96 44.97 29.59 68.60 2.03 47.00 16 21 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 22 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 23 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 24 C 0.14 5.70 6.51 86.36 0.56 6.26 16 25 C -0.12 -3.68 5.36 30.68 0.16 -3.52 16 26 C -0.09 -1.66 3.50 30.59 0.11 -1.55 16 27 C -0.08 -1.07 2.50 -10.79 -0.03 -1.10 16 28 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 29 C -0.15 -1.82 8.84 71.98 0.64 -1.18 16 30 H 0.05 0.81 4.81 -2.39 -0.01 0.80 16 31 H 0.06 0.78 6.43 -2.39 -0.02 0.76 16 32 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.06 1.07 6.43 -2.39 -0.02 1.06 16 36 H 0.07 1.07 7.56 -2.39 -0.02 1.05 16 37 H 0.41 7.78 7.07 -92.71 -0.66 7.12 16 38 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.08 2.19 8.14 -2.39 -0.02 2.18 16 41 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.07 2.10 7.15 -2.39 -0.02 2.08 16 43 H 0.00 0.03 8.14 -2.38 -0.02 0.01 16 44 H 0.05 2.70 6.06 -2.39 -0.01 2.68 16 45 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 46 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 47 H 0.05 2.07 7.94 -2.39 -0.02 2.06 16 48 H 0.08 2.17 8.14 -2.38 -0.02 2.15 16 49 H 0.05 1.79 8.14 -2.39 -0.02 1.78 16 50 H 0.05 1.21 6.39 -2.38 -0.02 1.19 16 51 H 0.05 1.12 8.10 -2.39 -0.02 1.10 16 52 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 53 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 54 H 0.05 0.71 6.43 -2.39 -0.02 0.70 16 Total: -1.00 -67.32 396.92 3.11 -64.21 By element: Atomic # 1 Polarization: 18.66 SS G_CDS: 0.20 Total: 18.86 kcal Atomic # 6 Polarization: -9.58 SS G_CDS: 5.17 Total: -4.41 kcal Atomic # 7 Polarization: -101.70 SS G_CDS: -4.24 Total: -105.94 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: -0.05 Total: -19.73 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -67.32 3.11 -64.21 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449942333.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.857 kcal (2) G-P(sol) polarization free energy of solvation -67.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds