Wall clock time and date at job start Tue Mar 31 2020 15:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.89160 * 2 1 4 4 C 1.54484 * 109.89942 * 238.94276 * 2 1 3 5 5 C 1.55959 * 102.65350 * 263.38850 * 4 2 1 6 6 H 1.09005 * 112.77962 * 203.18662 * 5 4 2 7 7 C 1.53009 * 107.23325 * 78.88855 * 5 4 2 8 8 C 1.51274 * 111.46393 * 197.38796 * 7 5 4 9 9 C 1.53251 * 108.94357 * 61.23470 * 8 7 5 10 10 C 1.52875 * 108.41720 * 297.21496 * 9 8 7 11 11 C 1.51178 * 111.24451 * 59.20980 * 10 9 8 12 12 H 1.08996 * 108.59208 * 186.10219 * 11 10 9 13 13 N 1.46524 * 113.00655 * 66.36394 * 11 10 9 14 14 C 1.34777 * 126.02054 * 30.20219 * 13 11 10 15 15 O 1.21591 * 119.99853 * 4.69289 * 14 13 11 16 16 N 1.34782 * 120.00355 * 184.68978 * 14 13 11 17 17 C 1.46498 * 120.00154 * 184.80007 * 16 14 13 18 18 C 1.52995 * 109.47000 * 180.02562 * 17 16 14 19 19 C 1.53002 * 109.47386 * 300.00138 * 18 17 16 20 20 C 1.53007 * 109.46985 * 59.99884 * 18 17 16 21 21 C 1.52997 * 109.47151 * 180.02562 * 18 17 16 22 22 C 1.50708 * 109.47052 * 180.02562 * 21 18 17 23 23 H 1.07993 * 119.99669 * 359.97438 * 22 21 18 24 24 C 1.37876 * 119.99791 * 179.97438 * 22 21 18 25 25 N 1.31516 * 120.00022 * 179.97438 * 24 22 21 26 26 Si 1.86805 * 120.00110 * 0.02562 * 24 22 21 27 27 H 1.48494 * 109.47366 * 89.99835 * 26 24 22 28 28 H 1.48499 * 109.46907 * 209.99698 * 26 24 22 29 29 H 1.48503 * 109.47032 * 329.99856 * 26 24 22 30 30 H 1.08996 * 109.46737 * 202.90668 * 1 2 3 31 31 H 1.09003 * 109.46941 * 322.90214 * 1 2 3 32 32 H 1.09004 * 109.47187 * 82.90394 * 1 2 3 33 33 H 1.09000 * 110.77411 * 145.10022 * 4 2 1 34 34 H 1.08999 * 110.77604 * 21.67998 * 4 2 1 35 35 H 1.09000 * 109.23074 * 316.84196 * 7 5 4 36 36 H 1.08996 * 109.23845 * 76.26147 * 7 5 4 37 37 H 1.09008 * 109.14457 * 301.59184 * 8 7 5 38 38 H 1.08993 * 109.79881 * 181.27190 * 8 7 5 39 39 H 1.08997 * 109.67501 * 177.48220 * 9 8 7 40 40 H 1.08995 * 109.67180 * 56.94173 * 9 8 7 41 41 H 1.08999 * 109.12450 * 179.66610 * 10 9 8 42 42 H 1.09003 * 109.12340 * 298.75835 * 10 9 8 43 43 H 0.97005 * 119.99266 * 4.80084 * 16 14 13 44 44 H 1.08992 * 109.47061 * 300.00086 * 17 16 14 45 45 H 1.09002 * 109.46829 * 60.00466 * 17 16 14 46 46 H 1.08998 * 109.46938 * 59.99528 * 19 18 17 47 47 H 1.08999 * 109.47237 * 179.97438 * 19 18 17 48 48 H 1.09007 * 109.46683 * 300.00143 * 19 18 17 49 49 H 1.08997 * 109.46787 * 60.00325 * 20 18 17 50 50 H 1.09007 * 109.46400 * 179.97438 * 20 18 17 51 51 H 1.08996 * 109.47210 * 299.99793 * 20 18 17 52 52 H 1.09003 * 109.47276 * 299.99730 * 21 18 17 53 53 H 1.08997 * 109.47461 * 60.00134 * 21 18 17 54 54 H 0.96996 * 120.00305 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9009 1.0250 0.0000 4 6 2.0558 -0.7494 -1.2444 5 6 2.3369 -2.1793 -0.6887 6 1 3.0674 -2.7273 -1.2838 7 6 0.9923 -2.9044 -0.6023 8 6 1.0740 -4.1164 0.2992 9 6 1.4505 -3.6605 1.7130 10 6 2.8370 -3.0189 1.6604 11 6 2.8579 -1.8360 0.7192 12 1 3.8844 -1.4805 0.6305 13 7 2.0318 -0.7190 1.1848 14 6 1.7762 -0.4041 2.4701 15 8 2.3173 -1.0222 3.3666 16 7 0.9209 0.5958 2.7618 17 6 0.7230 1.0079 4.1537 18 6 -0.2908 2.1524 4.2074 19 6 0.2341 3.3375 3.3944 20 6 -1.6231 1.6816 3.6205 21 6 -0.4971 2.5832 5.6609 22 6 -1.4963 3.7102 5.7139 23 1 -1.9394 4.0822 4.8020 24 6 -1.8445 4.2663 6.9265 25 7 -2.7161 5.2501 6.9728 26 14 -1.0774 3.6232 8.5037 27 1 0.1659 4.3814 8.7945 28 1 -2.0352 3.7942 9.6256 29 1 -0.7530 2.1828 8.3449 30 1 -0.3632 -0.9466 0.4000 31 1 -0.3633 0.8197 0.6199 32 1 -0.3634 0.1270 -1.0198 33 1 2.9734 -0.2907 -1.6129 34 1 1.2970 -0.7807 -2.0262 35 1 0.2442 -2.2259 -0.1922 36 1 0.6865 -3.2143 -1.6015 37 1 1.8376 -4.7946 -0.0819 38 1 0.1098 -4.6242 0.3233 39 1 1.4690 -4.5200 2.3830 40 1 0.7224 -2.9320 2.0697 41 1 3.1141 -2.6846 2.6602 42 1 3.5605 -3.7594 1.3193 43 1 0.4364 1.0426 2.0500 44 1 0.3486 0.1638 4.7327 45 1 1.6722 1.3429 4.5718 46 1 0.3815 3.0309 2.3589 47 1 -0.4884 4.1527 3.4323 48 1 1.1833 3.6729 3.8125 49 1 -1.9971 0.8374 4.1997 50 1 -2.3455 2.4970 3.6592 51 1 -1.4758 1.3750 2.5849 52 1 -0.8710 1.7392 6.2405 53 1 0.4521 2.9188 6.0786 54 1 -2.9608 5.6416 7.8258 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000513113649.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:40 Heat of formation + Delta-G solvation = -62.806719 kcal Electronic energy + Delta-G solvation = -29863.024817 eV Core-core repulsion = 26219.165820 eV Total energy + Delta-G solvation = -3643.858997 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.17978 -40.01798 -38.51826 -36.62670 -35.10738 -33.94825 -33.43882 -31.63560 -30.38330 -29.60219 -28.03448 -27.49516 -27.08685 -24.73210 -23.62614 -22.90365 -22.23531 -21.17057 -20.57117 -19.41750 -18.90619 -18.21935 -17.24856 -16.93233 -16.27677 -16.19968 -15.89473 -15.61022 -15.39872 -15.37259 -15.17336 -14.79423 -14.35637 -14.27842 -14.19307 -13.98537 -13.73647 -13.42322 -13.35509 -13.11170 -12.95570 -12.91140 -12.82834 -12.69242 -12.61554 -12.38893 -12.31849 -12.18203 -11.97761 -11.78017 -11.70343 -11.54093 -11.32178 -11.18754 -11.08573 -10.94512 -10.92728 -10.71094 -10.52539 -10.12367 -9.39065 -8.23109 -6.23084 1.35010 1.37918 1.48162 1.66835 2.19503 2.38455 3.01114 3.12299 3.55462 3.62622 3.82408 3.90034 4.00052 4.03587 4.07485 4.12099 4.21243 4.29101 4.40132 4.47289 4.51261 4.55510 4.59670 4.65045 4.69192 4.72392 4.77235 4.84503 4.88503 4.94711 4.99415 5.04093 5.05873 5.07141 5.08367 5.17351 5.25952 5.27229 5.30938 5.34408 5.35295 5.36986 5.37691 5.41458 5.49460 5.58644 5.66112 5.67282 5.71761 5.75102 6.19319 6.37295 6.83193 7.05845 7.39684 7.65113 8.92410 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.022750 B = 0.003083 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.459983 B = 9080.961885 C = 9555.484209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.116 3.884 3 H 0.077 0.923 4 C -0.114 4.114 5 C -0.085 4.085 6 H 0.120 0.880 7 C -0.124 4.124 8 C -0.114 4.114 9 C -0.107 4.107 10 C -0.133 4.133 11 C 0.156 3.844 12 H 0.057 0.943 13 N -0.624 5.624 14 C 0.716 3.284 15 O -0.628 6.628 16 N -0.731 5.731 17 C 0.157 3.843 18 C -0.057 4.057 19 C -0.121 4.121 20 C -0.121 4.121 21 C -0.002 4.002 22 C -0.501 4.501 23 H 0.054 0.946 24 C 0.008 3.992 25 N -0.950 5.950 26 Si 0.932 3.068 27 H -0.271 1.271 28 H -0.287 1.287 29 H -0.254 1.254 30 H 0.062 0.938 31 H 0.049 0.951 32 H 0.098 0.902 33 H 0.088 0.912 34 H 0.106 0.894 35 H 0.064 0.936 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.061 0.939 39 H 0.052 0.948 40 H 0.029 0.971 41 H 0.061 0.939 42 H 0.082 0.918 43 H 0.404 0.596 44 H 0.048 0.952 45 H 0.050 0.950 46 H 0.061 0.939 47 H 0.048 0.952 48 H 0.045 0.955 49 H 0.043 0.957 50 H 0.048 0.952 51 H 0.061 0.939 52 H 0.014 0.986 53 H 0.013 0.987 54 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.348 -17.226 -22.808 30.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.013 3.987 3 H 0.095 0.905 4 C -0.152 4.152 5 C -0.104 4.104 6 H 0.138 0.862 7 C -0.161 4.161 8 C -0.151 4.151 9 C -0.145 4.145 10 C -0.171 4.171 11 C 0.053 3.947 12 H 0.075 0.925 13 N -0.362 5.362 14 C 0.418 3.582 15 O -0.509 6.509 16 N -0.390 5.390 17 C 0.033 3.967 18 C -0.058 4.058 19 C -0.178 4.178 20 C -0.178 4.178 21 C -0.040 4.040 22 C -0.540 4.540 23 H 0.072 0.928 24 C -0.189 4.189 25 N -0.592 5.592 26 Si 0.758 3.242 27 H -0.197 1.197 28 H -0.214 1.214 29 H -0.178 1.178 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.117 0.883 33 H 0.107 0.893 34 H 0.125 0.875 35 H 0.083 0.917 36 H 0.101 0.899 37 H 0.092 0.908 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.048 0.952 41 H 0.079 0.921 42 H 0.100 0.900 43 H 0.244 0.756 44 H 0.067 0.933 45 H 0.069 0.931 46 H 0.080 0.920 47 H 0.067 0.933 48 H 0.064 0.936 49 H 0.062 0.938 50 H 0.068 0.932 51 H 0.080 0.920 52 H 0.032 0.968 53 H 0.031 0.969 54 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 10.647 -17.502 -21.961 30.032 hybrid contribution -0.264 0.571 1.445 1.576 sum 10.383 -16.930 -20.516 28.554 Atomic orbital electron populations 1.22620 0.94685 1.01744 1.04206 1.21966 0.94638 0.96625 0.85450 0.90508 1.23006 1.03011 0.93945 0.95227 1.22422 0.98193 0.96493 0.93317 0.86222 1.21519 0.97043 0.97112 1.00425 1.21257 1.01656 0.98206 0.94017 1.21362 0.96408 0.98854 0.97876 1.21447 0.98036 0.96889 1.00754 1.21066 0.93479 0.85914 0.94263 0.92534 1.47563 1.53684 1.32040 1.02869 1.15657 0.79931 0.80490 0.82129 1.90809 1.57301 1.56145 1.46677 1.45404 1.46183 1.37895 1.09535 1.21104 0.98102 0.96057 0.81476 1.20554 0.94581 0.93852 0.96787 1.21676 1.00355 0.97401 0.98388 1.21679 0.96263 1.00457 0.99391 1.19547 0.95707 0.95454 0.93257 1.21347 1.22930 1.16060 0.93620 0.92822 1.25796 0.95523 0.95114 1.02424 1.70032 1.35412 1.27066 1.26646 0.85922 0.78483 0.80190 0.79647 1.19674 1.21350 1.17785 0.91970 0.93235 0.88318 0.89320 0.87541 0.91739 0.89879 0.90812 0.91992 0.92922 0.95163 0.92068 0.89987 0.75565 0.93334 0.93149 0.91974 0.93260 0.93605 0.93808 0.93246 0.91973 0.96817 0.96861 0.92826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.47 8.02 71.98 0.58 -1.89 16 2 C 0.12 1.74 3.17 45.33 0.14 1.88 16 3 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 4 C -0.11 -1.00 5.96 32.12 0.19 -0.81 16 5 C -0.09 -0.93 3.65 -9.43 -0.03 -0.97 16 6 H 0.12 0.83 8.14 -2.38 -0.02 0.81 16 7 C -0.12 -1.47 4.84 30.03 0.15 -1.32 16 8 C -0.11 -1.65 5.88 30.11 0.18 -1.48 16 9 C -0.11 -2.32 5.89 30.64 0.18 -2.14 16 10 C -0.13 -2.96 4.87 29.96 0.15 -2.81 16 11 C 0.16 2.97 2.84 44.73 0.13 3.09 16 12 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 13 N -0.62 -13.98 2.74 -788.26 -2.16 -16.14 16 14 C 0.72 22.16 7.52 179.05 1.35 23.51 16 15 O -0.63 -24.38 13.98 -4.00 -0.06 -24.44 16 16 N -0.73 -21.43 4.79 -478.54 -2.29 -23.73 16 17 C 0.16 5.49 4.57 86.38 0.39 5.89 16 18 C -0.06 -2.12 0.54 -52.18 -0.03 -2.15 16 19 C -0.12 -4.18 8.05 71.98 0.58 -3.60 16 20 C -0.12 -4.21 8.05 71.98 0.58 -3.63 16 21 C 0.00 -0.08 3.11 29.85 0.09 0.01 16 22 C -0.50 -27.51 8.20 25.60 0.21 -27.30 16 23 H 0.05 3.15 5.92 -2.91 -0.02 3.13 16 24 C 0.01 0.45 5.47 84.65 0.46 0.91 16 25 N -0.95 -58.81 13.96 21.45 0.30 -58.51 16 26 Si 0.93 45.01 27.47 68.60 1.88 46.90 16 27 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 28 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 29 H -0.25 -11.69 6.54 99.48 0.65 -11.04 16 30 H 0.06 1.06 5.70 -2.39 -0.01 1.05 16 31 H 0.05 0.80 5.78 -2.39 -0.01 0.78 16 32 H 0.10 0.88 7.62 -2.39 -0.02 0.86 16 33 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.11 0.53 7.36 -2.39 -0.02 0.52 16 35 H 0.06 0.95 4.08 -2.39 -0.01 0.94 16 36 H 0.08 0.66 8.14 -2.39 -0.02 0.65 16 37 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 38 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.05 1.15 8.14 -2.39 -0.02 1.14 16 40 H 0.03 0.82 7.50 -2.39 -0.02 0.81 16 41 H 0.06 1.88 5.65 -2.39 -0.01 1.87 16 42 H 0.08 1.44 8.14 -2.39 -0.02 1.43 16 43 H 0.40 10.05 2.69 -92.70 -0.25 9.80 16 44 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 46 H 0.06 1.71 6.86 -2.39 -0.02 1.69 16 47 H 0.05 1.94 6.62 -2.39 -0.02 1.92 16 48 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 49 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 50 H 0.05 1.96 6.62 -2.38 -0.02 1.94 16 51 H 0.06 1.73 6.60 -2.39 -0.02 1.71 16 52 H 0.01 0.64 7.20 -2.39 -0.02 0.62 16 53 H 0.01 0.61 7.57 -2.39 -0.02 0.59 16 54 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -70.26 382.25 3.54 -66.72 By element: Atomic # 1 Polarization: 21.44 SS G_CDS: 0.57 Total: 22.01 kcal Atomic # 6 Polarization: -18.10 SS G_CDS: 5.29 Total: -12.81 kcal Atomic # 7 Polarization: -94.23 SS G_CDS: -4.15 Total: -98.38 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: -0.06 Total: -24.44 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 1.88 Total: 46.90 kcal Total: -70.26 3.54 -66.72 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000513113649.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.910 kcal (2) G-P(sol) polarization free energy of solvation -70.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds