Wall clock time and date at job start Tue Mar 31 2020 15:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.07421 * 2 1 4 4 C 1.55333 * 109.92105 * 238.77544 * 2 1 3 5 5 C 1.53667 * 101.78185 * 263.11607 * 4 2 1 6 6 H 1.09001 * 111.10516 * 78.51819 * 5 4 2 7 7 C 1.51924 * 115.23015 * 205.88511 * 5 4 2 8 8 C 1.53871 * 107.19734 * 174.25226 * 7 5 4 9 9 C 1.52570 * 112.08436 * 302.95508 * 8 7 5 10 10 C 1.53781 * 111.37632 * 54.46657 * 9 8 7 11 11 C 1.51421 * 107.34941 * 302.72456 * 10 9 8 12 12 H 1.08998 * 108.70662 * 306.29876 * 11 10 9 13 13 N 1.45391 * 117.73642 * 181.51246 * 11 10 9 14 14 C 1.34779 * 126.43770 * 30.44470 * 13 11 10 15 15 O 1.21581 * 120.00309 * 3.23820 * 14 13 11 16 16 N 1.34777 * 119.99675 * 183.23254 * 14 13 11 17 17 C 1.46505 * 119.99926 * 181.82977 * 16 14 13 18 18 C 1.53003 * 109.47275 * 180.02562 * 17 16 14 19 19 C 1.53001 * 109.46831 * 299.99553 * 18 17 16 20 20 C 1.52993 * 109.47060 * 59.99374 * 18 17 16 21 21 C 1.52996 * 109.46985 * 179.97438 * 18 17 16 22 22 C 1.50698 * 109.46931 * 179.97438 * 21 18 17 23 23 H 1.08003 * 119.99874 * 359.97438 * 22 21 18 24 24 C 1.37873 * 120.00317 * 179.97438 * 22 21 18 25 25 N 1.31519 * 119.99871 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 120.00480 * 179.97438 * 24 22 21 27 27 H 1.48508 * 109.46692 * 90.00218 * 26 24 22 28 28 H 1.48497 * 109.47426 * 209.99959 * 26 24 22 29 29 H 1.48499 * 109.47007 * 330.00430 * 26 24 22 30 30 H 1.09001 * 109.47461 * 188.64643 * 1 2 3 31 31 H 1.09008 * 109.47180 * 308.64518 * 1 2 3 32 32 H 1.08994 * 109.47371 * 68.64668 * 1 2 3 33 33 H 1.08999 * 110.96471 * 144.99581 * 4 2 1 34 34 H 1.08996 * 110.96746 * 21.24089 * 4 2 1 35 35 H 1.09003 * 109.89582 * 295.12573 * 7 5 4 36 36 H 1.08998 * 109.89630 * 56.23497 * 7 5 4 37 37 H 1.08998 * 109.07661 * 182.05621 * 8 7 5 38 38 H 1.08998 * 108.41654 * 63.41029 * 8 7 5 39 39 H 1.09003 * 109.10047 * 293.97416 * 9 8 7 40 40 H 1.09004 * 109.04756 * 174.91755 * 9 8 7 41 41 H 1.09006 * 109.87849 * 183.26186 * 10 9 8 42 42 H 1.08998 * 109.87821 * 62.18756 * 10 9 8 43 43 H 0.96998 * 120.00158 * 1.82184 * 16 14 13 44 44 H 1.09007 * 109.46708 * 299.99835 * 17 16 14 45 45 H 1.08992 * 109.47417 * 59.99367 * 17 16 14 46 46 H 1.09003 * 109.47156 * 60.00111 * 19 18 17 47 47 H 1.08996 * 109.47113 * 180.02562 * 19 18 17 48 48 H 1.09000 * 109.47137 * 300.00306 * 19 18 17 49 49 H 1.09000 * 109.47438 * 60.00382 * 20 18 17 50 50 H 1.09006 * 109.47303 * 180.02562 * 20 18 17 51 51 H 1.09003 * 109.47373 * 300.00162 * 20 18 17 52 52 H 1.09000 * 109.47046 * 299.99332 * 21 18 17 53 53 H 1.09000 * 109.47085 * 59.99632 * 21 18 17 54 54 H 0.96994 * 120.00304 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9041 1.0238 0.0000 4 6 2.0592 -0.7571 -1.2488 5 6 2.3357 -2.1552 -0.6744 6 1 1.4132 -2.7269 -0.5720 7 6 3.3961 -2.9587 -1.4079 8 6 3.6271 -4.2493 -0.6025 9 6 4.0336 -3.9606 0.8394 10 6 3.0166 -3.0404 1.5350 11 6 2.9189 -1.7725 0.7130 12 1 3.9208 -1.3647 0.5790 13 7 2.0350 -0.7221 1.1918 14 6 1.7322 -0.4550 2.4776 15 8 2.2618 -1.0872 3.3709 16 7 0.8423 0.5131 2.7732 17 6 0.5431 0.8308 4.1718 18 6 -0.4912 1.9569 4.2290 19 6 0.0681 3.1989 3.5323 20 6 -1.7722 1.5091 3.5222 21 6 -0.8042 2.2882 5.6895 22 6 -1.8224 3.3977 5.7458 23 1 -2.2075 3.8241 4.8313 24 6 -2.2625 3.8683 6.9647 25 7 -1.7939 3.3487 8.0783 26 14 -3.5241 5.2442 7.0346 27 1 -4.8905 4.6625 7.0459 28 1 -3.3165 6.0441 8.2683 29 1 -3.3685 6.1194 5.8450 30 1 -0.3634 -1.0160 0.1545 31 1 -0.3634 0.6418 0.8027 32 1 -0.3634 0.3742 -0.9570 33 1 2.9759 -0.3006 -1.6221 34 1 1.3002 -0.7994 -2.0300 35 1 3.0582 -3.1823 -2.4198 36 1 4.3291 -2.3963 -1.4433 37 1 4.4114 -4.8338 -1.0835 38 1 2.7021 -4.8259 -0.6032 39 1 5.0118 -3.4797 0.8448 40 1 4.0959 -4.9013 1.3866 41 1 3.3593 -2.8037 2.5424 42 1 2.0436 -3.5296 1.5790 43 1 0.4001 0.9996 2.0600 44 1 0.1441 -0.0540 4.6680 45 1 1.4557 1.1493 4.6753 46 1 0.2908 2.9626 2.4918 47 1 -0.6685 4.0013 3.5734 48 1 0.9808 3.5179 4.0358 49 1 -2.1707 0.6243 4.0185 50 1 -2.5089 2.3115 3.5626 51 1 -1.5495 1.2728 2.4817 52 1 -1.2029 1.4032 6.1854 53 1 0.1083 2.6069 6.1933 54 1 -2.1032 3.6800 8.9358 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000513113650.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:44 Heat of formation + Delta-G solvation = -71.563130 kcal Electronic energy + Delta-G solvation = -29186.492377 eV Core-core repulsion = 25542.253674 eV Total energy + Delta-G solvation = -3644.238704 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.99420 -40.07218 -38.53642 -36.96620 -35.20696 -33.91793 -33.27667 -31.45960 -30.51281 -29.03738 -28.00723 -27.55049 -26.94888 -25.09738 -23.68012 -22.87288 -22.01976 -21.05450 -20.88440 -19.79614 -18.46472 -18.30241 -17.31189 -16.75054 -16.50104 -16.06663 -15.77065 -15.72236 -15.43355 -15.14190 -14.96032 -14.67893 -14.62902 -14.41408 -14.09450 -13.94646 -13.82845 -13.56194 -13.21563 -13.08418 -12.89430 -12.76644 -12.73694 -12.68885 -12.60648 -12.36610 -12.23236 -12.14036 -11.99347 -11.96815 -11.60920 -11.56714 -11.45009 -11.36610 -11.14428 -11.00700 -10.87927 -10.67555 -10.51414 -10.18879 -9.46320 -8.13690 -6.21860 1.42651 1.43424 1.53729 1.62287 2.13900 2.44350 2.92031 3.20654 3.50187 3.61275 3.76563 3.94519 4.01390 4.06297 4.07449 4.16094 4.18275 4.20809 4.37567 4.42442 4.50776 4.54289 4.58237 4.65085 4.68970 4.69748 4.77132 4.85277 4.90117 4.94825 4.96405 5.06275 5.08564 5.09123 5.12617 5.17375 5.23815 5.27989 5.28657 5.35970 5.36726 5.42316 5.47346 5.47863 5.49809 5.52643 5.59592 5.60714 5.78374 5.89215 6.16762 6.30302 6.92591 7.01133 7.45850 7.59759 8.99043 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.028709 B = 0.002626 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.064857 B =10661.825837 C =11287.179852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.116 3.884 3 H 0.082 0.918 4 C -0.108 4.108 5 C -0.093 4.093 6 H 0.078 0.922 7 C -0.100 4.100 8 C -0.119 4.119 9 C -0.110 4.110 10 C -0.119 4.119 11 C 0.144 3.856 12 H 0.061 0.939 13 N -0.629 5.629 14 C 0.712 3.288 15 O -0.634 6.634 16 N -0.727 5.727 17 C 0.159 3.841 18 C -0.063 4.063 19 C -0.119 4.119 20 C -0.119 4.119 21 C 0.041 3.959 22 C -0.512 4.512 23 H 0.074 0.926 24 C -0.006 4.006 25 N -0.939 5.939 26 Si 0.960 3.040 27 H -0.276 1.276 28 H -0.290 1.290 29 H -0.258 1.258 30 H 0.055 0.945 31 H 0.048 0.952 32 H 0.103 0.897 33 H 0.092 0.908 34 H 0.108 0.892 35 H 0.092 0.908 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.058 0.942 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.048 0.952 42 H 0.048 0.952 43 H 0.406 0.594 44 H 0.040 0.960 45 H 0.040 0.960 46 H 0.063 0.937 47 H 0.060 0.940 48 H 0.037 0.963 49 H 0.036 0.964 50 H 0.060 0.940 51 H 0.063 0.937 52 H -0.015 1.015 53 H -0.014 1.014 54 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.588 -10.752 -27.434 30.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.014 3.986 3 H 0.100 0.900 4 C -0.146 4.146 5 C -0.113 4.113 6 H 0.097 0.903 7 C -0.138 4.138 8 C -0.156 4.156 9 C -0.148 4.148 10 C -0.157 4.157 11 C 0.040 3.960 12 H 0.079 0.921 13 N -0.366 5.366 14 C 0.414 3.586 15 O -0.516 6.516 16 N -0.387 5.387 17 C 0.034 3.966 18 C -0.063 4.063 19 C -0.177 4.177 20 C -0.177 4.177 21 C 0.003 3.997 22 C -0.550 4.550 23 H 0.092 0.908 24 C -0.203 4.203 25 N -0.581 5.581 26 Si 0.785 3.215 27 H -0.201 1.201 28 H -0.216 1.216 29 H -0.182 1.182 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.121 0.879 33 H 0.110 0.890 34 H 0.126 0.874 35 H 0.111 0.889 36 H 0.089 0.911 37 H 0.097 0.903 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.248 0.752 44 H 0.059 0.941 45 H 0.059 0.941 46 H 0.082 0.918 47 H 0.079 0.921 48 H 0.056 0.944 49 H 0.055 0.945 50 H 0.079 0.921 51 H 0.082 0.918 52 H 0.004 0.996 53 H 0.004 0.996 54 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 8.937 -11.137 -26.526 30.125 hybrid contribution -0.763 0.783 1.358 1.743 sum 8.174 -10.353 -25.168 28.416 Atomic orbital electron populations 1.22388 0.94240 1.02299 1.03688 1.22371 0.94864 0.96672 0.84714 0.89981 1.22610 1.03177 0.93631 0.95135 1.22218 0.99340 0.96539 0.93168 0.90341 1.21452 0.97869 0.95484 0.99002 1.21573 1.01990 0.98058 0.93975 1.21500 0.98001 0.98860 0.96458 1.21519 0.99729 0.95308 0.99171 1.21342 0.92874 0.87250 0.94542 0.92086 1.47515 1.50203 1.35748 1.03150 1.15764 0.80011 0.80666 0.82142 1.90851 1.58601 1.55210 1.46939 1.45493 1.45106 1.39164 1.08946 1.21072 0.97416 0.97020 0.81068 1.20700 0.94349 0.93836 0.97447 1.21673 1.00222 0.97049 0.98724 1.21690 0.96598 1.00689 0.98687 1.18961 0.95013 0.95126 0.90598 1.21571 1.22901 1.18085 0.92466 0.90790 1.25974 0.99006 0.99677 0.95644 1.70131 1.45573 1.44332 0.98029 0.85516 0.79080 0.79132 0.77734 1.20132 1.21614 1.18202 0.92609 0.93334 0.87854 0.88968 0.87368 0.88949 0.91096 0.90299 0.92304 0.91850 0.91683 0.93319 0.93340 0.75152 0.94143 0.94120 0.91813 0.92149 0.94414 0.94492 0.92130 0.91784 0.99617 0.99581 0.93177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.46 8.87 71.98 0.64 -1.82 16 2 C 0.12 1.85 3.40 45.46 0.15 2.00 16 3 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 4 C -0.11 -1.05 6.08 31.62 0.19 -0.85 16 5 C -0.09 -1.22 2.60 -10.14 -0.03 -1.25 16 6 H 0.08 1.16 8.13 -2.39 -0.02 1.14 16 7 C -0.10 -0.92 5.68 30.53 0.17 -0.75 16 8 C -0.12 -1.35 5.82 30.75 0.18 -1.17 16 9 C -0.11 -1.84 5.85 30.71 0.18 -1.66 16 10 C -0.12 -2.90 5.08 30.34 0.15 -2.75 16 11 C 0.14 3.08 2.50 45.47 0.11 3.20 16 12 H 0.06 1.32 7.90 -2.39 -0.02 1.30 16 13 N -0.63 -15.70 3.06 -784.36 -2.40 -18.10 16 14 C 0.71 24.38 8.20 179.05 1.47 25.85 16 15 O -0.63 -27.37 14.56 -3.97 -0.06 -27.43 16 16 N -0.73 -23.22 4.74 -478.52 -2.27 -25.48 16 17 C 0.16 6.23 4.57 86.38 0.39 6.62 16 18 C -0.06 -2.48 0.54 -52.18 -0.03 -2.51 16 19 C -0.12 -4.18 8.05 71.98 0.58 -3.60 16 20 C -0.12 -4.18 8.05 71.98 0.58 -3.60 16 21 C 0.04 2.12 4.04 29.85 0.12 2.24 16 22 C -0.51 -27.72 7.65 25.60 0.20 -27.52 16 23 H 0.07 3.72 5.68 -2.91 -0.02 3.70 16 24 C -0.01 -0.36 5.46 84.65 0.46 0.11 16 25 N -0.94 -57.85 13.29 21.45 0.28 -57.57 16 26 Si 0.96 43.81 29.54 68.60 2.03 45.84 16 27 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 28 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 29 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 30 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.05 0.85 4.58 -2.38 -0.01 0.84 16 32 H 0.10 0.90 8.04 -2.39 -0.02 0.88 16 33 H 0.09 0.70 8.13 -2.39 -0.02 0.68 16 34 H 0.11 0.58 7.79 -2.39 -0.02 0.56 16 35 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.07 0.62 8.01 -2.39 -0.02 0.60 16 37 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.05 1.58 6.53 -2.38 -0.02 1.56 16 42 H 0.05 1.27 8.12 -2.39 -0.02 1.25 16 43 H 0.41 10.65 2.60 -92.71 -0.24 10.41 16 44 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 45 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.06 1.74 6.86 -2.39 -0.02 1.73 16 47 H 0.06 2.21 6.62 -2.39 -0.02 2.19 16 48 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 49 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 50 H 0.06 2.21 6.62 -2.38 -0.02 2.19 16 51 H 0.06 1.75 6.13 -2.39 -0.01 1.74 16 52 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 53 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 54 H 0.26 15.16 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -72.72 394.84 3.73 -68.99 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: 0.62 Total: 21.21 kcal Atomic # 6 Polarization: -12.99 SS G_CDS: 5.53 Total: -7.46 kcal Atomic # 7 Polarization: -96.77 SS G_CDS: -4.38 Total: -101.15 kcal Atomic # 8 Polarization: -27.37 SS G_CDS: -0.06 Total: -27.43 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -72.72 3.73 -68.99 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000513113650.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.570 kcal (2) G-P(sol) polarization free energy of solvation -72.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds