Wall clock time and date at job start Tue Mar 31 2020 15:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.90984 * 2 1 4 4 C 1.55339 * 109.91768 * 238.89250 * 2 1 3 5 5 C 1.53669 * 101.77618 * 218.19575 * 4 2 1 6 6 H 1.08996 * 111.10569 * 280.71295 * 5 4 2 7 7 C 1.51933 * 115.22843 * 153.34573 * 5 4 2 8 8 C 1.53707 * 107.34292 * 184.27286 * 7 5 4 9 9 C 1.52739 * 111.40476 * 58.08394 * 8 7 5 10 10 C 1.53783 * 111.42346 * 305.21259 * 9 8 7 11 11 C 1.51423 * 107.35250 * 57.26812 * 10 9 8 12 12 H 1.09001 * 108.70681 * 53.70480 * 11 10 9 13 13 N 1.45954 * 118.53050 * 178.34861 * 11 10 9 14 14 C 1.34780 * 125.98481 * 329.31127 * 13 11 10 15 15 O 1.21589 * 119.99757 * 359.18508 * 14 13 11 16 16 N 1.34771 * 120.00117 * 179.18755 * 14 13 11 17 17 C 1.46500 * 119.99907 * 179.97438 * 16 14 13 18 18 C 1.53004 * 109.47396 * 180.02562 * 17 16 14 19 19 C 1.53004 * 109.46875 * 300.00348 * 18 17 16 20 20 C 1.53005 * 109.47152 * 59.99782 * 18 17 16 21 21 C 1.52990 * 109.47434 * 180.02562 * 18 17 16 22 22 C 1.50706 * 109.47332 * 179.97438 * 21 18 17 23 23 H 1.08002 * 119.99743 * 359.97438 * 22 21 18 24 24 C 1.37879 * 120.00227 * 179.97438 * 22 21 18 25 25 N 1.31515 * 119.99938 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00017 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.46956 * 89.99972 * 26 24 22 28 28 H 1.48498 * 109.47083 * 210.00070 * 26 24 22 29 29 H 1.48507 * 109.46775 * 330.00154 * 26 24 22 30 30 H 1.08995 * 109.47345 * 181.11190 * 1 2 3 31 31 H 1.09000 * 109.46611 * 301.11197 * 1 2 3 32 32 H 1.08999 * 109.47325 * 61.10744 * 1 2 3 33 33 H 1.08987 * 110.96923 * 100.06994 * 4 2 1 34 34 H 1.09004 * 110.99612 * 336.32622 * 4 2 1 35 35 H 1.09002 * 109.89483 * 303.75510 * 7 5 4 36 36 H 1.08994 * 109.89473 * 64.79186 * 7 5 4 37 37 H 1.08998 * 109.07683 * 178.68307 * 8 7 5 38 38 H 1.08995 * 109.07176 * 297.64613 * 8 7 5 39 39 H 1.08999 * 109.07677 * 184.70753 * 9 8 7 40 40 H 1.08995 * 109.02359 * 65.67366 * 9 8 7 41 41 H 1.09003 * 109.87654 * 297.81265 * 10 9 8 42 42 H 1.08991 * 109.87845 * 176.73509 * 10 9 8 43 43 H 0.96998 * 120.00166 * 0.02562 * 16 14 13 44 44 H 1.09000 * 109.47714 * 300.00208 * 17 16 14 45 45 H 1.09002 * 109.47238 * 60.00138 * 17 16 14 46 46 H 1.08997 * 109.47399 * 59.99293 * 19 18 17 47 47 H 1.09002 * 109.47004 * 179.97438 * 19 18 17 48 48 H 1.09002 * 109.46856 * 299.99504 * 19 18 17 49 49 H 1.08998 * 109.46624 * 60.00028 * 20 18 17 50 50 H 1.08992 * 109.47265 * 180.02562 * 20 18 17 51 51 H 1.08997 * 109.46854 * 300.00542 * 20 18 17 52 52 H 1.09000 * 109.47625 * 299.99981 * 21 18 17 53 53 H 1.09002 * 109.47289 * 59.99888 * 21 18 17 54 54 H 0.96993 * 120.00172 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9012 1.0248 0.0000 4 6 2.0593 -0.7545 -1.2505 5 6 3.2776 -1.4952 -0.6775 6 1 4.1352 -0.8286 -0.5865 7 6 3.6571 -2.7754 -1.4024 8 6 4.8159 -3.4172 -0.6229 9 6 4.4242 -3.6994 0.8262 10 6 3.9086 -2.4308 1.5260 11 6 2.7377 -1.9132 0.7173 12 1 2.0147 -2.7194 0.5935 13 7 2.0350 -0.7245 1.1902 14 6 1.8881 -0.3509 2.4768 15 8 2.3521 -1.0380 3.3662 16 7 1.2267 0.7842 2.7775 17 6 1.0665 1.1900 4.1761 18 6 0.2839 2.5032 4.2397 19 6 1.0466 3.5889 3.4777 20 6 -1.0942 2.3069 3.6045 21 6 0.1171 2.9273 5.7001 22 6 -0.6532 4.2211 5.7628 23 1 -0.9898 4.6938 4.8519 24 6 -0.9284 4.8014 6.9829 25 7 -0.5181 4.2261 8.0921 26 14 -1.8826 6.4054 7.0604 27 1 -3.3356 6.1130 7.1515 28 1 -1.4571 7.1772 8.2555 29 1 -1.6135 7.2010 5.8356 30 1 -0.3634 -1.0274 0.0199 31 1 -0.3632 0.5310 0.8799 32 1 -0.3634 0.4965 -0.8997 33 1 2.3594 -0.0548 -2.0302 34 1 1.3160 -1.4582 -1.6256 35 1 2.8049 -3.4547 -1.4262 36 1 3.9763 -2.5454 -2.4189 37 1 5.0959 -4.3528 -1.1069 38 1 5.6709 -2.7413 -0.6352 39 1 5.2949 -4.0745 1.3640 40 1 3.6417 -4.4580 0.8414 41 1 4.6974 -1.6791 1.5589 42 1 3.5827 -2.6720 2.5376 43 1 0.8561 1.3321 2.0681 44 1 0.5228 0.4168 4.7189 45 1 2.0482 1.3295 4.6287 46 1 1.1658 3.2869 2.4372 47 1 0.4888 4.5243 3.5227 48 1 2.0283 3.7288 3.9302 49 1 -1.6375 1.5335 4.1473 50 1 -1.6516 3.2425 3.6494 51 1 -0.9750 2.0050 2.5640 52 1 -0.4261 2.1541 6.2434 53 1 1.0990 3.0673 6.1523 54 1 -0.7119 4.6340 8.9504 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000513113651.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:48 Heat of formation + Delta-G solvation = -77.682157 kcal Electronic energy + Delta-G solvation = -29103.216687 eV Core-core repulsion = 25458.712642 eV Total energy + Delta-G solvation = -3644.504045 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.91132 -40.05875 -38.52543 -36.93633 -35.18943 -33.90446 -33.21169 -31.53535 -30.50780 -29.03325 -27.99492 -27.49203 -26.97397 -25.07184 -23.63973 -22.74176 -22.06900 -21.13003 -20.81665 -19.73463 -18.44570 -18.31884 -17.42036 -16.75037 -16.49532 -16.11379 -15.72278 -15.61723 -15.32056 -15.06932 -14.93517 -14.86192 -14.62771 -14.35216 -13.96133 -13.92523 -13.83696 -13.66569 -13.27420 -12.94454 -12.90719 -12.78571 -12.71897 -12.69702 -12.59400 -12.35601 -12.23262 -12.13254 -11.99115 -11.95631 -11.69040 -11.55637 -11.45112 -11.38737 -11.16447 -11.00668 -10.87614 -10.66138 -10.51338 -10.17826 -9.45286 -8.13645 -6.21736 1.42640 1.43412 1.53685 1.62329 2.15419 2.44390 2.92974 3.20727 3.47409 3.65036 3.76081 3.95132 4.03639 4.06829 4.08570 4.15390 4.19853 4.27909 4.40239 4.42244 4.50195 4.52326 4.58954 4.66200 4.70014 4.71826 4.78967 4.80888 4.92036 4.93450 5.04122 5.05834 5.07686 5.09945 5.11079 5.19755 5.25346 5.27648 5.30103 5.35780 5.40184 5.40697 5.48032 5.48340 5.50202 5.52924 5.59532 5.60671 5.78926 5.89463 6.14980 6.30499 6.92798 7.01998 7.45946 7.60353 8.99090 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.027728 B = 0.002614 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.565183 B =10710.095592 C =11341.413199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.118 3.882 3 H 0.081 0.919 4 C -0.107 4.107 5 C -0.096 4.096 6 H 0.079 0.921 7 C -0.101 4.101 8 C -0.118 4.118 9 C -0.111 4.111 10 C -0.117 4.117 11 C 0.145 3.855 12 H 0.060 0.940 13 N -0.629 5.629 14 C 0.712 3.288 15 O -0.635 6.635 16 N -0.724 5.724 17 C 0.161 3.839 18 C -0.063 4.063 19 C -0.119 4.119 20 C -0.119 4.119 21 C 0.040 3.960 22 C -0.512 4.512 23 H 0.074 0.926 24 C -0.006 4.006 25 N -0.939 5.939 26 Si 0.960 3.040 27 H -0.275 1.275 28 H -0.290 1.290 29 H -0.258 1.258 30 H 0.056 0.944 31 H 0.045 0.955 32 H 0.098 0.902 33 H 0.106 0.894 34 H 0.092 0.908 35 H 0.072 0.928 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.060 0.940 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.049 0.951 42 H 0.048 0.952 43 H 0.406 0.594 44 H 0.040 0.960 45 H 0.040 0.960 46 H 0.064 0.936 47 H 0.059 0.941 48 H 0.036 0.964 49 H 0.036 0.964 50 H 0.059 0.941 51 H 0.064 0.936 52 H -0.015 1.015 53 H -0.015 1.015 54 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.419 -12.246 -27.365 30.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.016 3.984 3 H 0.100 0.900 4 C -0.144 4.144 5 C -0.115 4.115 6 H 0.097 0.903 7 C -0.138 4.138 8 C -0.156 4.156 9 C -0.149 4.149 10 C -0.156 4.156 11 C 0.041 3.959 12 H 0.078 0.922 13 N -0.366 5.366 14 C 0.414 3.586 15 O -0.516 6.516 16 N -0.382 5.382 17 C 0.036 3.964 18 C -0.063 4.063 19 C -0.176 4.176 20 C -0.176 4.176 21 C 0.003 3.997 22 C -0.550 4.550 23 H 0.092 0.908 24 C -0.203 4.203 25 N -0.581 5.581 26 Si 0.785 3.215 27 H -0.201 1.201 28 H -0.216 1.216 29 H -0.182 1.182 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.117 0.883 33 H 0.125 0.875 34 H 0.111 0.889 35 H 0.090 0.910 36 H 0.108 0.892 37 H 0.097 0.903 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.244 0.756 44 H 0.059 0.941 45 H 0.059 0.941 46 H 0.083 0.917 47 H 0.078 0.922 48 H 0.055 0.945 49 H 0.055 0.945 50 H 0.078 0.922 51 H 0.083 0.917 52 H 0.004 0.996 53 H 0.004 0.996 54 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 6.724 -12.681 -26.461 30.103 hybrid contribution -0.534 0.966 1.337 1.733 sum 6.190 -11.716 -25.124 28.404 Atomic orbital electron populations 1.22265 0.94123 1.02705 1.03204 1.22336 0.94844 0.96620 0.84644 0.90049 1.22594 0.96943 0.99762 0.95139 1.22241 0.98062 0.97975 0.93218 0.90290 1.21426 0.98598 0.94585 0.99217 1.21595 0.98415 1.01593 0.93969 1.21542 1.00995 0.95874 0.96485 1.21499 0.96700 0.98206 0.99166 1.21422 0.93304 0.86686 0.94454 0.92239 1.47684 1.58205 1.27604 1.03128 1.15777 0.79219 0.81422 0.82210 1.90856 1.56881 1.56617 1.47284 1.45178 1.59701 1.24342 1.08945 1.21054 0.98659 0.95731 0.80918 1.20699 0.95584 0.92642 0.97385 1.21667 0.99000 0.98481 0.98464 1.21674 0.95347 1.01539 0.99046 1.18963 0.94793 0.95312 0.90647 1.21575 1.33797 1.07053 0.92585 0.90802 1.25974 0.97382 1.01278 0.95673 1.70129 1.48313 1.41448 0.98177 0.85518 0.78693 0.79435 0.77831 1.20124 1.21620 1.18219 0.92462 0.93609 0.88349 0.87517 0.88929 0.90965 0.89244 0.90281 0.92118 0.91676 0.91898 0.93252 0.93315 0.75573 0.94128 0.94144 0.91730 0.92231 0.94500 0.94502 0.92207 0.91684 0.99621 0.99617 0.93181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.40 9.14 71.98 0.66 -1.74 16 2 C 0.12 1.86 3.03 45.47 0.14 2.00 16 3 H 0.08 1.21 8.10 -2.39 -0.02 1.19 16 4 C -0.11 -1.05 6.09 31.62 0.19 -0.85 16 5 C -0.10 -1.26 2.60 -10.13 -0.03 -1.29 16 6 H 0.08 1.17 8.12 -2.39 -0.02 1.15 16 7 C -0.10 -0.94 5.61 30.48 0.17 -0.77 16 8 C -0.12 -1.34 5.86 30.75 0.18 -1.16 16 9 C -0.11 -1.84 5.83 30.77 0.18 -1.66 16 10 C -0.12 -2.85 5.09 30.34 0.15 -2.69 16 11 C 0.15 3.11 2.53 45.37 0.11 3.22 16 12 H 0.06 1.29 7.87 -2.39 -0.02 1.27 16 13 N -0.63 -15.57 3.01 -783.05 -2.35 -17.92 16 14 C 0.71 24.14 8.26 179.05 1.48 25.62 16 15 O -0.63 -27.23 14.54 -4.00 -0.06 -27.29 16 16 N -0.72 -22.84 4.62 -478.53 -2.21 -25.05 16 17 C 0.16 6.26 4.56 86.38 0.39 6.66 16 18 C -0.06 -2.46 0.54 -52.18 -0.03 -2.49 16 19 C -0.12 -4.14 8.05 71.98 0.58 -3.56 16 20 C -0.12 -4.13 8.05 71.98 0.58 -3.55 16 21 C 0.04 2.11 4.04 29.85 0.12 2.23 16 22 C -0.51 -27.70 7.65 25.60 0.20 -27.50 16 23 H 0.07 3.71 5.68 -2.91 -0.02 3.70 16 24 C -0.01 -0.36 5.46 84.66 0.46 0.10 16 25 N -0.94 -57.85 13.29 21.45 0.28 -57.56 16 26 Si 0.96 43.82 29.54 68.60 2.03 45.85 16 27 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 28 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 29 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 30 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.04 0.82 5.98 -2.39 -0.01 0.81 16 32 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.09 0.72 7.87 -2.39 -0.02 0.70 16 35 H 0.07 0.64 7.98 -2.39 -0.02 0.62 16 36 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.05 1.28 8.12 -2.39 -0.02 1.26 16 42 H 0.05 1.57 6.57 -2.39 -0.02 1.55 16 43 H 0.41 10.46 3.64 -92.71 -0.34 10.12 16 44 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 45 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 46 H 0.06 1.75 6.86 -2.39 -0.02 1.74 16 47 H 0.06 2.18 6.62 -2.39 -0.02 2.16 16 48 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 49 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 50 H 0.06 2.17 6.62 -2.39 -0.02 2.16 16 51 H 0.06 1.75 6.56 -2.39 -0.02 1.74 16 52 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 53 H -0.01 -0.85 8.14 -2.39 -0.02 -0.86 16 54 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -72.46 397.56 3.75 -68.71 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: 0.52 Total: 20.70 kcal Atomic # 6 Polarization: -12.98 SS G_CDS: 5.54 Total: -7.44 kcal Atomic # 7 Polarization: -96.25 SS G_CDS: -4.28 Total: -100.53 kcal Atomic # 8 Polarization: -27.23 SS G_CDS: -0.06 Total: -27.29 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -72.46 3.75 -68.71 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000513113651.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.974 kcal (2) G-P(sol) polarization free energy of solvation -72.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds