Wall clock time and date at job start Tue Mar 31 2020 15:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.89453 * 2 1 4 4 C 1.54483 * 109.90225 * 238.94184 * 2 1 3 5 5 C 1.55963 * 102.65494 * 217.66582 * 4 2 1 6 6 H 1.08994 * 113.41219 * 157.09995 * 5 4 2 7 7 C 1.53011 * 106.57162 * 281.34190 * 5 4 2 8 8 C 1.52759 * 110.71555 * 163.13705 * 7 5 4 9 9 C 1.53246 * 108.63952 * 298.06881 * 8 7 5 10 10 C 1.52868 * 108.44789 * 63.16860 * 9 8 7 11 11 C 1.51191 * 111.23741 * 300.76175 * 10 9 8 12 12 H 1.09003 * 108.58562 * 173.90187 * 11 10 9 13 13 N 1.46520 * 113.00747 * 293.63541 * 11 10 9 14 14 C 1.34779 * 126.02226 * 329.81908 * 13 11 10 15 15 O 1.21582 * 119.99845 * 0.02562 * 14 13 11 16 16 N 1.34773 * 119.99938 * 179.97438 * 14 13 11 17 17 C 1.46502 * 119.99876 * 180.02562 * 16 14 13 18 18 C 1.53005 * 109.46987 * 180.02562 * 17 16 14 19 19 C 1.53000 * 109.47136 * 299.99564 * 18 17 16 20 20 C 1.53001 * 109.47392 * 59.99788 * 18 17 16 21 21 C 1.53000 * 109.46911 * 179.97438 * 18 17 16 22 22 C 1.50708 * 109.46898 * 179.97438 * 21 18 17 23 23 H 1.07998 * 119.99920 * 0.02562 * 22 21 18 24 24 C 1.37877 * 119.99917 * 180.02562 * 22 21 18 25 25 N 1.31511 * 120.00211 * 180.02562 * 24 22 21 26 26 Si 1.86801 * 119.99867 * 359.97438 * 24 22 21 27 27 H 1.48507 * 109.46583 * 90.00442 * 26 24 22 28 28 H 1.48495 * 109.47044 * 209.99871 * 26 24 22 29 29 H 1.48498 * 109.47330 * 330.00584 * 26 24 22 30 30 H 1.08997 * 109.47143 * 181.06467 * 1 2 3 31 31 H 1.09003 * 109.46849 * 301.06397 * 1 2 3 32 32 H 1.08994 * 109.46985 * 61.05954 * 1 2 3 33 33 H 1.08992 * 110.77838 * 99.37564 * 4 2 1 34 34 H 1.08995 * 110.77280 * 335.95157 * 4 2 1 35 35 H 1.08998 * 109.23271 * 283.44946 * 7 5 4 36 36 H 1.09004 * 109.23623 * 42.82648 * 7 5 4 37 37 H 1.08994 * 109.65235 * 178.30370 * 8 7 5 38 38 H 1.09002 * 109.58813 * 57.79975 * 8 7 5 39 39 H 1.09002 * 109.67762 * 303.41472 * 9 8 7 40 40 H 1.09004 * 109.67301 * 182.91522 * 9 8 7 41 41 H 1.08993 * 109.12907 * 61.21657 * 10 9 8 42 42 H 1.09004 * 109.12483 * 180.31144 * 10 9 8 43 43 H 0.97006 * 119.99918 * 0.02562 * 16 14 13 44 44 H 1.09000 * 109.46906 * 299.99583 * 17 16 14 45 45 H 1.08993 * 109.47232 * 60.00169 * 17 16 14 46 46 H 1.09004 * 109.46695 * 60.00352 * 19 18 17 47 47 H 1.08998 * 109.47404 * 180.02562 * 19 18 17 48 48 H 1.08994 * 109.47186 * 300.00760 * 19 18 17 49 49 H 1.09003 * 109.46845 * 59.99656 * 20 18 17 50 50 H 1.08998 * 109.47173 * 180.02562 * 20 18 17 51 51 H 1.08998 * 109.46918 * 300.00300 * 20 18 17 52 52 H 1.09000 * 109.47440 * 299.99833 * 21 18 17 53 53 H 1.09002 * 109.47310 * 59.99928 * 21 18 17 54 54 H 0.96993 * 120.00715 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9009 1.0250 0.0000 4 6 2.0559 -0.7494 -1.2443 5 6 3.3048 -1.5001 -0.6885 6 1 3.5838 -2.3728 -1.2790 7 6 4.4317 -0.4686 -0.6029 8 6 5.5569 -0.9713 0.2998 9 6 4.9991 -1.1703 1.7132 10 6 3.9242 -2.2560 1.6606 11 6 2.8048 -1.8732 0.7193 12 1 2.1212 -2.7176 0.6307 13 7 2.0354 -0.7164 1.1849 14 6 1.8265 -0.3688 2.4702 15 8 2.2977 -1.0420 3.3663 16 7 1.0962 0.7257 2.7621 17 6 0.8697 1.1039 4.1592 18 6 0.0165 2.3729 4.2121 19 6 0.7445 3.5075 3.4883 20 6 -1.3279 2.1125 3.5298 21 6 -0.2206 2.7676 5.6712 22 6 -1.0604 4.0179 5.7233 23 1 -1.3922 4.4841 4.8074 24 6 -1.4052 4.5665 6.9403 25 7 -2.1385 5.6573 6.9858 26 14 -0.8319 3.7597 8.5246 27 1 0.4819 4.3268 8.9215 28 1 -1.8259 4.0150 9.5979 29 1 -0.6959 2.2961 8.3137 30 1 -0.3633 -1.0275 0.0191 31 1 -0.3633 0.5303 0.8803 32 1 -0.3633 0.4973 -0.8993 33 1 2.3436 -0.0465 -2.0261 34 1 1.3124 -1.4561 -1.6128 35 1 4.8276 -0.2856 -1.6017 36 1 4.0359 0.4628 -0.1980 37 1 6.3625 -0.2376 0.3245 38 1 5.9349 -1.9200 -0.0813 39 1 4.5618 -0.2378 2.0699 40 1 5.8008 -1.4798 2.3838 41 1 4.3745 -3.1882 1.3196 42 1 3.5156 -2.4028 2.6604 43 1 0.7207 1.2631 2.0471 44 1 0.3506 0.2959 4.6748 45 1 1.8274 1.2891 4.6454 46 1 0.9131 3.2260 2.4488 47 1 0.1370 4.4116 3.5264 48 1 1.7023 3.6929 3.9744 49 1 -1.8465 1.3042 4.0455 50 1 -1.9355 3.0167 3.5671 51 1 -1.1593 1.8311 2.4904 52 1 -0.7394 1.9593 6.1866 53 1 0.7370 2.9530 6.1577 54 1 -2.3807 6.0435 7.8419 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000513113652.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:51 Heat of formation + Delta-G solvation = -68.939062 kcal Electronic energy + Delta-G solvation = -29718.566181 eV Core-core repulsion = 26074.441266 eV Total energy + Delta-G solvation = -3644.124916 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.09059 -39.98434 -38.49085 -36.70115 -35.09717 -33.93865 -33.28963 -31.61694 -30.56820 -29.60678 -28.03332 -27.46553 -26.73388 -24.68324 -23.64860 -23.16484 -22.32122 -21.03533 -20.44998 -19.45822 -18.91169 -18.26777 -17.19273 -16.88188 -16.27876 -16.15782 -15.80448 -15.69206 -15.38190 -15.15469 -15.12447 -14.83675 -14.68749 -14.23758 -14.19139 -13.97558 -13.76306 -13.39601 -13.33203 -13.14392 -12.94740 -12.86272 -12.66817 -12.63778 -12.50970 -12.39432 -12.31709 -12.19561 -12.12820 -11.77890 -11.70927 -11.54182 -11.39929 -11.30816 -11.18307 -10.94249 -10.92883 -10.71192 -10.51675 -10.11735 -9.38240 -8.23161 -6.23145 1.34943 1.37802 1.48042 1.67591 2.21271 2.38386 2.98997 3.12248 3.56208 3.61288 3.80910 3.90233 4.02538 4.03917 4.09524 4.12527 4.21289 4.34184 4.35457 4.47787 4.55143 4.59121 4.60478 4.66390 4.67321 4.70802 4.75522 4.83031 4.88839 4.92766 4.99442 5.03794 5.05995 5.07866 5.13483 5.15559 5.25358 5.26574 5.31423 5.33598 5.35804 5.36412 5.37983 5.40748 5.48572 5.53854 5.62482 5.66485 5.71864 5.75138 6.18016 6.37258 6.83170 7.06079 7.39625 7.65683 8.92384 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.021329 B = 0.003091 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.441425 B = 9055.939273 C = 9636.582671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.117 3.883 3 H 0.074 0.926 4 C -0.113 4.113 5 C -0.087 4.087 6 H 0.123 0.877 7 C -0.109 4.109 8 C -0.115 4.115 9 C -0.107 4.107 10 C -0.132 4.132 11 C 0.157 3.843 12 H 0.057 0.943 13 N -0.623 5.623 14 C 0.716 3.284 15 O -0.627 6.627 16 N -0.730 5.730 17 C 0.159 3.841 18 C -0.057 4.057 19 C -0.121 4.121 20 C -0.120 4.120 21 C -0.002 4.002 22 C -0.501 4.501 23 H 0.054 0.946 24 C 0.008 3.992 25 N -0.950 5.950 26 Si 0.932 3.068 27 H -0.272 1.272 28 H -0.287 1.287 29 H -0.254 1.254 30 H 0.058 0.942 31 H 0.045 0.955 32 H 0.093 0.907 33 H 0.103 0.897 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.046 0.954 37 H 0.060 0.940 38 H 0.077 0.923 39 H 0.028 0.972 40 H 0.052 0.948 41 H 0.081 0.919 42 H 0.062 0.938 43 H 0.404 0.596 44 H 0.049 0.951 45 H 0.049 0.951 46 H 0.061 0.939 47 H 0.048 0.952 48 H 0.043 0.957 49 H 0.044 0.956 50 H 0.048 0.952 51 H 0.063 0.937 52 H 0.014 0.986 53 H 0.012 0.988 54 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.284 -16.056 -22.813 30.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.015 3.985 3 H 0.092 0.908 4 C -0.151 4.151 5 C -0.106 4.106 6 H 0.141 0.859 7 C -0.146 4.146 8 C -0.152 4.152 9 C -0.144 4.144 10 C -0.170 4.170 11 C 0.053 3.947 12 H 0.075 0.925 13 N -0.361 5.361 14 C 0.418 3.582 15 O -0.508 6.508 16 N -0.388 5.388 17 C 0.034 3.966 18 C -0.058 4.058 19 C -0.178 4.178 20 C -0.178 4.178 21 C -0.040 4.040 22 C -0.540 4.540 23 H 0.072 0.928 24 C -0.189 4.189 25 N -0.592 5.592 26 Si 0.758 3.242 27 H -0.197 1.197 28 H -0.213 1.213 29 H -0.177 1.177 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.112 0.888 33 H 0.122 0.878 34 H 0.108 0.892 35 H 0.102 0.898 36 H 0.065 0.935 37 H 0.079 0.921 38 H 0.096 0.904 39 H 0.047 0.953 40 H 0.070 0.930 41 H 0.100 0.900 42 H 0.080 0.920 43 H 0.243 0.757 44 H 0.068 0.932 45 H 0.067 0.933 46 H 0.080 0.920 47 H 0.067 0.933 48 H 0.062 0.938 49 H 0.063 0.937 50 H 0.067 0.933 51 H 0.081 0.919 52 H 0.032 0.968 53 H 0.030 0.970 54 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 12.513 -16.391 -21.961 30.125 hybrid contribution -0.389 0.544 1.451 1.597 sum 12.123 -15.847 -20.510 28.614 Atomic orbital electron populations 1.22311 0.94489 1.02753 1.03008 1.21961 0.94494 0.96652 0.85439 0.90838 1.22966 0.97090 0.99807 0.95240 1.22484 0.95141 0.99511 0.93487 0.85890 1.21525 0.95086 0.97708 1.00326 1.21539 0.97734 1.01905 0.94057 1.21351 0.97421 0.97893 0.97784 1.21461 0.95822 0.98980 1.00759 1.21050 0.92254 0.87148 0.94216 0.92504 1.47530 1.55189 1.30511 1.02881 1.15648 0.79260 0.81135 0.82143 1.90807 1.57410 1.55936 1.46681 1.45305 1.56373 1.28175 1.08907 1.21094 0.98476 0.95785 0.81242 1.20553 0.95230 0.93220 0.96753 1.21669 0.99350 0.97937 0.98834 1.21680 0.95910 1.01121 0.99052 1.19547 0.95717 0.95444 0.93254 1.21349 1.30572 1.08854 0.93180 0.92834 1.25796 0.95246 0.95327 1.02494 1.70027 1.40030 1.22652 1.26460 0.85922 0.78218 0.80360 0.79738 1.19722 1.21341 1.17745 0.92241 0.93630 0.88805 0.87825 0.89161 0.89760 0.93494 0.92096 0.90420 0.95273 0.92959 0.90008 0.91960 0.75721 0.93212 0.93286 0.91969 0.93285 0.93754 0.93726 0.93310 0.91869 0.96751 0.96954 0.92824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.43 9.05 71.98 0.65 -1.78 16 2 C 0.12 1.77 2.31 45.32 0.10 1.88 16 3 H 0.07 1.12 7.81 -2.38 -0.02 1.10 16 4 C -0.11 -1.01 5.84 32.12 0.19 -0.82 16 5 C -0.09 -0.96 3.68 -9.43 -0.03 -0.99 16 6 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 7 C -0.11 -1.34 4.89 30.52 0.15 -1.19 16 8 C -0.11 -1.69 5.93 30.60 0.18 -1.51 16 9 C -0.11 -2.34 5.86 30.63 0.18 -2.16 16 10 C -0.13 -2.93 4.82 29.96 0.14 -2.79 16 11 C 0.16 2.96 2.85 44.73 0.13 3.09 16 12 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 13 N -0.62 -13.93 2.73 -788.25 -2.15 -16.09 16 14 C 0.72 22.05 7.56 179.05 1.35 23.40 16 15 O -0.63 -24.17 13.83 -3.97 -0.05 -24.23 16 16 N -0.73 -21.26 4.55 -478.54 -2.18 -23.43 16 17 C 0.16 5.51 4.56 86.38 0.39 5.91 16 18 C -0.06 -2.11 0.54 -52.18 -0.03 -2.14 16 19 C -0.12 -4.19 8.05 71.98 0.58 -3.61 16 20 C -0.12 -4.17 8.05 71.98 0.58 -3.59 16 21 C 0.00 -0.08 3.11 29.85 0.09 0.01 16 22 C -0.50 -27.52 8.20 25.60 0.21 -27.31 16 23 H 0.05 3.15 5.92 -2.91 -0.02 3.13 16 24 C 0.01 0.45 5.47 84.65 0.46 0.91 16 25 N -0.95 -58.86 13.96 21.45 0.30 -58.56 16 26 Si 0.93 45.03 27.47 68.60 1.88 46.92 16 27 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 28 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 29 H -0.25 -11.66 6.54 99.48 0.65 -11.01 16 30 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.04 0.82 5.23 -2.39 -0.01 0.81 16 32 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.10 0.56 7.97 -2.39 -0.02 0.55 16 34 H 0.09 0.63 7.86 -2.39 -0.02 0.62 16 35 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.05 0.75 6.89 -2.38 -0.02 0.73 16 37 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.03 0.81 7.50 -2.39 -0.02 0.79 16 40 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 41 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.06 1.91 5.64 -2.38 -0.01 1.89 16 43 H 0.40 10.01 3.37 -92.70 -0.31 9.70 16 44 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 45 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 46 H 0.06 1.72 6.86 -2.38 -0.02 1.71 16 47 H 0.05 1.94 6.62 -2.39 -0.02 1.92 16 48 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 49 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 50 H 0.05 1.92 6.62 -2.39 -0.02 1.91 16 51 H 0.06 1.73 6.23 -2.39 -0.01 1.72 16 52 H 0.01 0.67 7.20 -2.39 -0.02 0.65 16 53 H 0.01 0.57 7.57 -2.39 -0.02 0.55 16 54 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -70.08 387.50 3.63 -66.46 By element: Atomic # 1 Polarization: 21.13 SS G_CDS: 0.50 Total: 21.62 kcal Atomic # 6 Polarization: -18.03 SS G_CDS: 5.34 Total: -12.69 kcal Atomic # 7 Polarization: -94.04 SS G_CDS: -4.03 Total: -98.08 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: -0.05 Total: -24.23 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 1.88 Total: 46.92 kcal Total: -70.08 3.63 -66.46 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000513113652.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.484 kcal (2) G-P(sol) polarization free energy of solvation -70.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds