Wall clock time and date at job start Tue Mar 31 2020 15:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46841 * 2 1 4 4 C 1.53003 * 109.47035 * 240.00947 * 2 1 3 5 5 C 1.53007 * 109.46611 * 299.99338 * 4 2 1 6 6 C 1.52993 * 109.47054 * 300.00167 * 5 4 2 7 7 C 1.53003 * 109.47548 * 60.00406 * 6 5 4 8 8 C 1.52997 * 109.46591 * 299.99796 * 7 6 5 9 9 H 1.08997 * 109.47265 * 299.99734 * 8 7 6 10 10 C 1.53002 * 109.46943 * 179.97438 * 8 7 6 11 11 C 1.50704 * 109.46801 * 65.00237 * 10 8 7 12 12 O 1.21275 * 119.99970 * 359.97438 * 11 10 8 13 13 N 1.34778 * 119.99634 * 180.02562 * 11 10 8 14 14 C 1.46508 * 119.99587 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.46755 * 180.02562 * 14 13 11 16 16 H 1.09003 * 109.52510 * 54.92177 * 15 14 13 17 17 C 1.53039 * 109.49414 * 175.00011 * 15 14 13 18 18 C 1.53042 * 109.53618 * 181.31587 * 17 15 14 19 19 C 1.53187 * 109.31412 * 298.63748 * 18 17 15 20 20 N 1.46927 * 108.77707 * 54.63025 * 19 18 17 21 21 C 1.36939 * 120.62547 * 126.37221 * 20 19 18 22 22 H 1.07999 * 119.99940 * 207.69033 * 21 20 19 23 23 C 1.38807 * 120.00306 * 27.69141 * 21 20 19 24 24 N 1.31622 * 120.00399 * 17.35694 * 23 21 20 25 25 Si 1.86806 * 120.00130 * 197.36036 * 23 21 20 26 26 H 1.48504 * 109.47203 * 59.99822 * 25 23 21 27 27 H 1.48498 * 109.47147 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.46877 * 300.00014 * 25 23 21 29 29 C 1.46918 * 118.74019 * 306.39609 * 20 19 18 30 30 H 1.09000 * 109.47007 * 299.99276 * 1 2 3 31 31 H 1.08997 * 109.47105 * 59.99520 * 1 2 3 32 32 H 1.08999 * 109.46404 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46730 * 179.97438 * 4 2 1 34 34 H 1.08996 * 109.47132 * 59.99483 * 4 2 1 35 35 H 1.09000 * 109.46807 * 180.02562 * 5 4 2 36 36 H 1.08995 * 109.46679 * 60.00317 * 5 4 2 37 37 H 1.08995 * 109.47499 * 299.99647 * 6 5 4 38 38 H 1.09000 * 109.47172 * 179.97438 * 6 5 4 39 39 H 1.08996 * 109.47132 * 179.97438 * 7 6 5 40 40 H 1.09002 * 109.46730 * 59.99371 * 7 6 5 41 41 H 1.09000 * 109.47186 * 304.99979 * 10 8 7 42 42 H 1.08998 * 109.47291 * 185.00027 * 10 8 7 43 43 H 0.96996 * 120.00390 * 359.97438 * 13 11 10 44 44 H 1.08995 * 109.46862 * 59.99914 * 14 13 11 45 45 H 1.08999 * 109.46726 * 300.00106 * 14 13 11 46 46 H 1.08998 * 109.45984 * 61.29533 * 17 15 14 47 47 H 1.09002 * 109.46257 * 301.33315 * 17 15 14 48 48 H 1.09002 * 109.49805 * 178.68095 * 18 17 15 49 49 H 1.09001 * 109.50070 * 58.58814 * 18 17 15 50 50 H 1.08998 * 109.58821 * 174.42657 * 19 18 17 51 51 H 1.09003 * 109.58790 * 294.84776 * 19 18 17 52 52 H 0.96996 * 120.00742 * 179.97438 * 24 23 21 53 53 H 1.08997 * 109.58627 * 293.81655 * 29 20 19 54 54 H 1.08999 * 109.70353 * 173.46619 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 1.5301 -2.1636 -1.2494 6 6 2.0402 -2.8849 -0.0003 7 6 1.5302 -2.1638 1.2491 8 6 2.0401 -0.7213 1.2491 9 1 3.1301 -0.7213 1.2491 10 6 1.5296 0.0000 2.4982 11 6 2.1303 -0.6352 3.7257 12 8 2.8912 -1.5728 3.6127 13 7 1.8209 -0.1620 4.9492 14 6 2.4043 -0.7799 6.1426 15 6 1.8930 -0.0593 7.3917 16 1 0.8029 -0.0580 7.3909 17 6 2.4020 -0.7806 8.6418 18 6 1.8642 -0.0800 9.8916 19 6 2.3769 1.3632 9.9236 20 7 2.0162 2.0213 8.6604 21 6 1.3292 3.2059 8.6624 22 1 0.6920 3.4620 7.8288 23 6 1.4517 4.0776 9.7356 24 7 2.4578 3.9510 10.5748 25 14 0.1887 5.4304 9.9892 26 1 -1.1553 4.8252 10.1702 27 1 0.5429 6.2183 11.1970 28 1 0.1740 6.3226 8.8022 29 6 2.4060 1.3841 7.3954 30 1 -0.3633 0.5137 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3632 -1.0277 -0.0005 33 1 3.1300 -0.7206 -1.2496 34 1 1.6766 -0.2072 -2.1393 35 1 1.8937 -2.6775 -2.1392 36 1 0.4401 -2.1636 -1.2494 37 1 3.1301 -2.8849 -0.0003 38 1 1.6765 -3.9124 -0.0001 39 1 1.8932 -2.6780 2.1390 40 1 0.4401 -2.1639 1.2491 41 1 0.4433 -0.0770 2.5437 42 1 1.8179 1.0502 2.4546 43 1 1.2120 0.5876 5.0396 44 1 3.4906 -0.7029 6.0973 45 1 2.1160 -1.8302 6.1857 46 1 3.4918 -0.7600 8.6545 47 1 2.0587 -1.8151 8.6293 48 1 2.2080 -0.6080 10.7810 49 1 0.7745 -0.0785 9.8673 50 1 1.9184 1.8955 10.7570 51 1 3.4607 1.3635 10.0391 52 1 2.5437 4.5603 11.3246 53 1 3.4922 1.3861 7.3048 54 1 1.9687 1.9295 6.5591 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000530642842.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:48 Heat of formation + Delta-G solvation = -76.799174 kcal Electronic energy + Delta-G solvation = -28230.624014 eV Core-core repulsion = 24586.158259 eV Total energy + Delta-G solvation = -3644.465756 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.23327 -39.88526 -39.11217 -36.21613 -34.64822 -33.74842 -32.53007 -32.29988 -31.88459 -28.96013 -27.38568 -27.19197 -26.08514 -23.84113 -23.28424 -22.79667 -22.21121 -21.27840 -20.49139 -19.26642 -18.68699 -17.88657 -16.99291 -16.78511 -16.63974 -16.44333 -15.89603 -15.70497 -15.30558 -15.13578 -15.02359 -14.68862 -14.53154 -14.34391 -14.01672 -13.80695 -13.72608 -13.63905 -13.38768 -13.17358 -13.01241 -12.84547 -12.63960 -12.47198 -12.38259 -12.29233 -12.16397 -11.97652 -11.89010 -11.81962 -11.60131 -11.58004 -11.33456 -11.13292 -11.05507 -11.03733 -10.76642 -10.51815 -10.47529 -9.97319 -8.67926 -7.86144 -5.31755 1.47817 1.50463 1.56865 1.74375 2.32404 2.51901 3.28480 3.60461 3.71637 3.80187 3.83499 3.99712 4.01937 4.04279 4.10916 4.26554 4.35398 4.40523 4.43778 4.53197 4.53962 4.58542 4.60218 4.65978 4.74125 4.77405 4.80526 4.86424 4.88659 4.92026 4.95760 5.01141 5.06812 5.10153 5.14268 5.21823 5.24551 5.25717 5.31429 5.33386 5.36653 5.40374 5.45616 5.49976 5.55393 5.58700 5.64486 5.67305 5.74434 5.78056 6.39339 6.64015 7.15311 7.34433 7.86889 8.39094 9.20125 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.018131 B = 0.002477 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.951432 B =11301.633547 C =12475.273006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.084 4.084 3 H 0.073 0.927 4 C -0.114 4.114 5 C -0.118 4.118 6 C -0.117 4.117 7 C -0.118 4.118 8 C -0.061 4.061 9 H 0.053 0.947 10 C -0.135 4.135 11 C 0.507 3.493 12 O -0.579 6.579 13 N -0.723 5.723 14 C 0.139 3.861 15 C -0.099 4.099 16 H 0.077 0.923 17 C -0.098 4.098 18 C -0.130 4.130 19 C 0.172 3.828 20 N -0.609 5.609 21 C -0.262 4.262 22 H 0.072 0.928 23 C -0.054 4.054 24 N -0.937 5.937 25 Si 0.967 3.033 26 H -0.277 1.277 27 H -0.298 1.298 28 H -0.274 1.274 29 C 0.154 3.846 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.047 0.953 38 H 0.060 0.940 39 H 0.052 0.948 40 H 0.067 0.933 41 H 0.114 0.886 42 H 0.108 0.892 43 H 0.411 0.589 44 H 0.051 0.949 45 H 0.068 0.932 46 H 0.053 0.947 47 H 0.079 0.921 48 H 0.068 0.932 49 H 0.053 0.947 50 H 0.052 0.948 51 H -0.009 1.009 52 H 0.249 0.751 53 H 0.003 0.997 54 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.246 -11.326 -21.011 24.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.103 4.103 3 H 0.092 0.908 4 C -0.151 4.151 5 C -0.155 4.155 6 C -0.155 4.155 7 C -0.155 4.155 8 C -0.080 4.080 9 H 0.072 0.928 10 C -0.174 4.174 11 C 0.296 3.704 12 O -0.460 6.460 13 N -0.375 5.375 14 C 0.014 3.986 15 C -0.120 4.120 16 H 0.095 0.905 17 C -0.136 4.136 18 C -0.169 4.169 19 C 0.046 3.954 20 N -0.333 5.333 21 C -0.392 4.392 22 H 0.090 0.910 23 C -0.249 4.249 24 N -0.583 5.583 25 Si 0.795 3.205 26 H -0.203 1.203 27 H -0.224 1.224 28 H -0.199 1.199 29 C 0.028 3.972 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.066 0.934 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.085 0.915 41 H 0.132 0.868 42 H 0.126 0.874 43 H 0.247 0.753 44 H 0.070 0.930 45 H 0.086 0.914 46 H 0.071 0.929 47 H 0.097 0.903 48 H 0.087 0.913 49 H 0.072 0.928 50 H 0.071 0.929 51 H 0.009 0.991 52 H 0.058 0.942 53 H 0.021 0.979 54 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.667 -11.873 -20.952 24.530 hybrid contribution -0.211 1.269 0.887 1.563 sum -4.877 -10.604 -20.065 23.213 Atomic orbital electron populations 1.21999 0.94450 1.02288 1.02218 1.21119 0.96647 0.98957 0.93559 0.90816 1.21555 1.00199 0.95770 0.97610 1.21562 1.01220 0.95534 0.97172 1.21486 1.00078 0.98938 0.94953 1.21667 1.00431 0.95329 0.98084 1.20838 0.99469 0.94865 0.92800 0.92822 1.21872 1.03072 1.01554 0.90912 1.21295 0.80715 0.83007 0.85429 1.90640 1.37887 1.30262 1.87196 1.46121 1.49069 1.36651 1.05653 1.21193 0.97412 0.96671 0.83315 1.21705 1.00840 0.95671 0.93746 0.90487 1.21343 1.00030 0.98844 0.93372 1.21999 1.00285 0.96619 0.97987 1.20637 0.94866 0.90710 0.89140 1.44310 1.65456 1.22426 1.01062 1.19517 1.18838 0.95234 1.05574 0.91039 1.25820 0.98937 1.00140 0.99974 1.70195 1.30235 1.40188 1.17713 0.85346 0.79172 0.78976 0.76985 1.20316 1.22416 1.19926 1.21000 0.95490 0.92178 0.88505 0.92025 0.92149 0.92097 0.92802 0.90957 0.91780 0.91115 0.93369 0.92142 0.92897 0.91478 0.86757 0.87359 0.75324 0.93030 0.91373 0.92854 0.90279 0.91321 0.92778 0.92950 0.99064 0.94211 0.97943 0.92344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 8.15 71.98 0.59 -1.18 16 2 C -0.08 -1.17 2.72 -10.79 -0.03 -1.19 16 3 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 4 C -0.11 -1.52 5.45 30.60 0.17 -1.35 16 5 C -0.12 -1.58 5.65 30.59 0.17 -1.41 16 6 C -0.12 -2.02 5.92 30.59 0.18 -1.84 16 7 C -0.12 -2.29 4.67 30.59 0.14 -2.14 16 8 C -0.06 -1.11 1.61 -10.79 -0.02 -1.13 16 9 H 0.05 1.23 7.96 -2.39 -0.02 1.21 16 10 C -0.13 -2.33 4.67 29.85 0.14 -2.19 16 11 C 0.51 12.67 7.55 87.66 0.66 13.33 16 12 O -0.58 -18.78 13.97 -3.02 -0.04 -18.82 16 13 N -0.72 -17.44 5.33 -463.05 -2.47 -19.91 16 14 C 0.14 3.79 5.07 86.38 0.44 4.22 16 15 C -0.10 -3.05 2.37 -10.72 -0.03 -3.08 16 16 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 17 C -0.10 -3.01 5.17 30.62 0.16 -2.85 16 18 C -0.13 -4.72 6.08 30.67 0.19 -4.53 16 19 C 0.17 8.27 5.31 86.36 0.46 8.73 16 20 N -0.61 -29.85 2.99 -699.14 -2.09 -31.95 16 21 C -0.26 -13.98 9.59 84.03 0.81 -13.17 16 22 H 0.07 3.63 7.89 -2.91 -0.02 3.61 16 23 C -0.05 -2.95 4.91 84.86 0.42 -2.53 16 24 N -0.94 -55.42 11.19 21.65 0.24 -55.17 16 25 Si 0.97 44.03 29.59 68.60 2.03 46.06 16 26 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 27 H -0.30 -13.79 7.11 99.48 0.71 -13.09 16 28 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 29 C 0.15 6.04 5.60 86.36 0.48 6.52 16 30 H 0.06 0.66 6.54 -2.39 -0.02 0.64 16 31 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.06 0.72 4.81 -2.39 -0.01 0.71 16 33 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.07 0.87 6.43 -2.39 -0.02 0.85 16 37 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.05 1.35 5.95 -2.39 -0.01 1.34 16 40 H 0.07 1.14 6.43 -2.39 -0.02 1.13 16 41 H 0.11 1.54 6.71 -2.39 -0.02 1.52 16 42 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.41 8.57 7.70 -92.71 -0.71 7.85 16 44 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 45 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 46 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 47 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 48 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 49 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 50 H 0.05 2.86 6.03 -2.39 -0.01 2.85 16 51 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 52 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 53 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 54 H 0.06 2.15 7.14 -2.39 -0.02 2.13 16 Total: -1.00 -66.32 395.19 2.74 -63.59 By element: Atomic # 1 Polarization: 21.85 SS G_CDS: 0.14 Total: 21.99 kcal Atomic # 6 Polarization: -10.72 SS G_CDS: 4.93 Total: -5.79 kcal Atomic # 7 Polarization: -102.71 SS G_CDS: -4.32 Total: -107.03 kcal Atomic # 8 Polarization: -18.78 SS G_CDS: -0.04 Total: -18.82 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -66.32 2.74 -63.59 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000530642842.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.212 kcal (2) G-P(sol) polarization free energy of solvation -66.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds