Wall clock time and date at job start Tue Mar 31 2020 15:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.46965 * 2 1 4 4 C 1.52996 * 109.47411 * 239.99253 * 2 1 3 5 5 C 1.52999 * 109.47218 * 179.97438 * 4 2 1 6 6 C 1.53005 * 109.46816 * 60.00596 * 5 4 2 7 7 C 1.53004 * 109.46982 * 299.99641 * 6 5 4 8 8 C 1.53000 * 109.46983 * 119.99280 * 2 1 3 9 9 H 1.09003 * 109.47173 * 60.00348 * 8 2 1 10 10 C 1.52998 * 109.47538 * 300.00317 * 8 2 1 11 11 C 1.50696 * 109.47478 * 174.99786 * 10 8 2 12 12 O 1.21281 * 119.99918 * 0.02562 * 11 10 8 13 13 N 1.34778 * 119.99989 * 179.97438 * 11 10 8 14 14 C 1.46505 * 120.00039 * 180.02562 * 13 11 10 15 15 C 1.52991 * 109.47292 * 180.02562 * 14 13 11 16 16 H 1.09006 * 109.50071 * 55.06359 * 15 14 13 17 17 C 1.53041 * 109.49979 * 175.16185 * 15 14 13 18 18 C 1.53042 * 109.54206 * 181.31873 * 17 15 14 19 19 C 1.53195 * 109.30666 * 298.63356 * 18 17 15 20 20 N 1.46923 * 108.77876 * 54.63547 * 19 18 17 21 21 C 1.36932 * 120.63128 * 126.41395 * 20 19 18 22 22 H 1.08006 * 120.00180 * 207.66322 * 21 20 19 23 23 C 1.38811 * 120.00142 * 27.65940 * 21 20 19 24 24 N 1.31612 * 119.99984 * 17.37479 * 23 21 20 25 25 Si 1.86808 * 120.00100 * 197.36744 * 23 21 20 26 26 H 1.48497 * 109.46662 * 90.00068 * 25 23 21 27 27 H 1.48493 * 109.47023 * 210.00284 * 25 23 21 28 28 H 1.48504 * 109.46964 * 330.00361 * 25 23 21 29 29 C 1.46928 * 118.73856 * 306.39036 * 20 19 18 30 30 H 1.09003 * 109.46882 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47611 * 300.00182 * 1 2 3 32 32 H 1.08994 * 109.47328 * 60.00691 * 1 2 3 33 33 H 1.08995 * 109.47114 * 300.00202 * 4 2 1 34 34 H 1.09008 * 109.46687 * 59.99902 * 4 2 1 35 35 H 1.09000 * 109.46947 * 180.02562 * 5 4 2 36 36 H 1.08990 * 109.47068 * 300.00383 * 5 4 2 37 37 H 1.08995 * 109.47329 * 59.99579 * 6 5 4 38 38 H 1.08993 * 109.47136 * 179.97438 * 6 5 4 39 39 H 1.08993 * 109.47294 * 179.97438 * 7 6 5 40 40 H 1.09003 * 109.47184 * 300.00353 * 7 6 5 41 41 H 1.09001 * 109.47162 * 295.00053 * 10 8 2 42 42 H 1.09001 * 109.47010 * 54.99633 * 10 8 2 43 43 H 0.97000 * 120.00107 * 0.02562 * 13 11 10 44 44 H 1.09001 * 109.46797 * 300.00366 * 14 13 11 45 45 H 1.08999 * 109.46987 * 59.99678 * 14 13 11 46 46 H 1.09003 * 109.45648 * 301.33461 * 17 15 14 47 47 H 1.08993 * 109.46248 * 61.29219 * 17 15 14 48 48 H 1.08996 * 109.49830 * 178.68566 * 18 17 15 49 49 H 1.08993 * 109.52415 * 58.59644 * 18 17 15 50 50 H 1.09003 * 109.58701 * 294.84487 * 19 18 17 51 51 H 1.09006 * 109.58636 * 174.42350 * 19 18 17 52 52 H 0.97005 * 120.00321 * 179.97438 * 24 23 21 53 53 H 1.09002 * 109.58484 * 293.82041 * 29 20 19 54 54 H 1.08995 * 109.58766 * 173.39553 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 3.5701 -0.7208 -1.2494 6 6 4.0805 -1.4417 0.0000 7 6 3.5705 -0.7203 1.2492 8 6 2.0400 -0.7211 1.2493 9 1 1.6767 -1.7488 1.2494 10 6 1.5300 0.0002 2.4985 11 6 1.9285 -0.7780 3.7259 12 8 2.5590 -1.8079 3.6127 13 7 1.5854 -0.3289 4.9495 14 6 1.9734 -1.0851 6.1428 15 6 1.4632 -0.3639 7.3919 16 1 0.3876 -0.2080 7.3082 17 6 1.7622 -1.2127 8.6297 18 6 1.2231 -0.5074 9.8764 19 6 1.9246 0.8450 10.0365 20 7 1.7644 1.6111 8.7931 21 6 1.2497 2.8798 8.8166 22 1 0.7258 3.2661 7.9547 23 6 1.4011 3.6693 9.9482 24 7 2.3065 3.3583 10.8513 25 14 0.3198 5.1735 10.1891 26 1 -0.9092 4.7864 10.9272 27 1 1.0626 6.1975 10.9668 28 1 -0.0533 5.7321 8.8647 29 6 2.1674 0.9902 7.5239 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5137 -0.8900 33 1 1.6768 -1.7490 -1.2490 34 1 1.6767 -0.2076 -2.1392 35 1 3.9334 -1.2343 -2.1395 36 1 3.9330 0.3069 -1.2497 37 1 3.7175 -2.4694 0.0003 38 1 5.1704 -1.4417 -0.0004 39 1 3.9337 -1.2340 2.1392 40 1 3.9334 0.3075 1.2489 41 1 1.9645 0.9988 2.5444 42 1 0.4436 0.0784 2.4548 43 1 1.0815 0.4950 5.0400 44 1 1.5388 -2.0837 6.0972 45 1 3.0597 -1.1633 6.1860 46 1 1.2824 -2.1860 8.5271 47 1 2.8395 -1.3475 8.7261 48 1 1.4157 -1.1234 10.7548 49 1 0.1498 -0.3502 9.7704 50 1 2.9848 0.6857 10.2335 51 1 1.4755 1.3939 10.8643 52 1 2.4126 3.9102 11.6419 53 1 3.2474 0.8427 7.5160 54 1 1.8785 1.6347 6.6938 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000530642843.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:52 Heat of formation + Delta-G solvation = -80.500912 kcal Electronic energy + Delta-G solvation = -28184.293473 eV Core-core repulsion = 24539.667198 eV Total energy + Delta-G solvation = -3644.626275 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.16140 -39.75510 -39.02297 -36.21405 -34.65460 -34.00415 -32.89503 -32.30249 -31.88417 -28.86659 -27.27363 -27.05419 -26.06391 -23.84350 -23.20094 -22.42377 -21.89447 -21.24119 -20.57852 -20.46537 -18.68508 -17.85669 -16.94914 -16.81654 -16.61729 -15.91715 -15.84778 -15.59387 -15.31106 -15.17908 -15.05892 -14.86754 -14.59467 -14.51661 -14.02223 -13.85791 -13.75024 -13.55332 -13.24794 -13.02023 -12.95802 -12.85862 -12.64887 -12.52082 -12.41458 -12.29506 -12.24956 -11.94856 -11.83153 -11.82366 -11.68208 -11.58354 -11.33493 -11.26988 -11.12127 -11.07725 -10.78801 -10.53395 -10.46514 -9.97500 -8.68430 -7.86321 -5.32043 1.47814 1.49415 1.57827 1.74132 2.32260 2.51656 3.28297 3.60327 3.72717 3.75403 3.84483 3.99648 4.01758 4.03925 4.10327 4.19840 4.31291 4.40150 4.44326 4.51946 4.57958 4.59549 4.62097 4.66229 4.73106 4.76252 4.79603 4.86720 4.89433 4.91902 4.92416 5.00727 5.03176 5.10095 5.10661 5.22785 5.24419 5.26404 5.32391 5.33629 5.35279 5.40458 5.42198 5.50449 5.54312 5.57414 5.62103 5.67247 5.69798 5.77952 6.39187 6.63845 7.15130 7.34245 7.86635 8.38831 9.20016 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.016563 B = 0.002508 C = 0.002317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.102137 B =11161.707790 C =12082.564616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.084 4.084 3 H 0.076 0.924 4 C -0.112 4.112 5 C -0.117 4.117 6 C -0.117 4.117 7 C -0.120 4.120 8 C -0.058 4.058 9 H 0.058 0.942 10 C -0.137 4.137 11 C 0.507 3.493 12 O -0.579 6.579 13 N -0.723 5.723 14 C 0.139 3.861 15 C -0.099 4.099 16 H 0.077 0.923 17 C -0.098 4.098 18 C -0.130 4.130 19 C 0.172 3.828 20 N -0.610 5.610 21 C -0.260 4.260 22 H 0.072 0.928 23 C -0.054 4.054 24 N -0.937 5.937 25 Si 0.967 3.033 26 H -0.286 1.286 27 H -0.299 1.299 28 H -0.265 1.265 29 C 0.154 3.846 30 H 0.050 0.950 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.051 0.949 38 H 0.058 0.942 39 H 0.053 0.947 40 H 0.058 0.942 41 H 0.107 0.893 42 H 0.116 0.884 43 H 0.411 0.589 44 H 0.068 0.932 45 H 0.051 0.949 46 H 0.079 0.921 47 H 0.053 0.947 48 H 0.068 0.932 49 H 0.054 0.946 50 H -0.009 1.009 51 H 0.052 0.948 52 H 0.249 0.751 53 H 0.003 0.997 54 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.548 -8.609 -22.008 23.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.102 4.102 3 H 0.094 0.906 4 C -0.149 4.149 5 C -0.155 4.155 6 C -0.154 4.154 7 C -0.158 4.158 8 C -0.077 4.077 9 H 0.077 0.923 10 C -0.176 4.176 11 C 0.296 3.704 12 O -0.460 6.460 13 N -0.375 5.375 14 C 0.014 3.986 15 C -0.120 4.120 16 H 0.095 0.905 17 C -0.136 4.136 18 C -0.169 4.169 19 C 0.046 3.954 20 N -0.333 5.333 21 C -0.390 4.390 22 H 0.090 0.910 23 C -0.249 4.249 24 N -0.584 5.584 25 Si 0.795 3.205 26 H -0.213 1.213 27 H -0.226 1.226 28 H -0.189 1.189 29 C 0.028 3.972 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.125 0.875 42 H 0.134 0.866 43 H 0.247 0.753 44 H 0.086 0.914 45 H 0.070 0.930 46 H 0.097 0.903 47 H 0.071 0.929 48 H 0.087 0.913 49 H 0.072 0.928 50 H 0.009 0.991 51 H 0.070 0.930 52 H 0.058 0.942 53 H 0.021 0.979 54 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.061 -9.236 -21.951 24.011 hybrid contribution -0.185 1.196 0.986 1.561 sum -3.246 -8.040 -20.965 22.687 Atomic orbital electron populations 1.21924 0.94565 1.01888 1.02457 1.21147 0.95944 0.99543 0.93564 0.90605 1.21575 0.95244 1.00541 0.97580 1.21536 0.95956 1.00735 0.97247 1.21485 0.99988 0.99107 0.94840 1.21676 0.95523 1.00326 0.98255 1.20864 0.95169 0.98917 0.92788 0.92317 1.21903 1.04449 1.00328 0.90946 1.21283 0.78296 0.85420 0.85421 1.90641 1.41568 1.26559 1.87211 1.46120 1.57602 1.28151 1.05623 1.21192 0.99225 0.94895 0.83282 1.21705 1.00743 0.95829 0.93692 0.90474 1.21341 1.00644 0.98129 0.93467 1.21997 0.99922 0.96927 0.98042 1.20640 0.95119 0.90285 0.89320 1.44323 1.73543 1.13081 1.02313 1.19561 1.27366 0.90727 1.01349 0.90999 1.25819 0.99020 1.00831 0.99229 1.70203 1.34236 1.41416 1.12513 0.85269 0.78177 0.78982 0.78053 1.21310 1.22561 1.18912 1.21007 0.94832 0.92908 0.88417 0.93069 0.91785 0.91841 0.92512 0.90882 0.91501 0.91761 0.92996 0.92349 0.92862 0.92287 0.87461 0.86575 0.75325 0.91377 0.93017 0.90279 0.92851 0.91334 0.92766 0.99062 0.92970 0.94229 0.97913 0.92341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 8.85 71.98 0.64 -1.14 16 2 C -0.08 -1.14 2.25 -10.79 -0.02 -1.17 16 3 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 4 C -0.11 -1.47 5.20 30.59 0.16 -1.31 16 5 C -0.12 -1.65 5.92 30.60 0.18 -1.47 16 6 C -0.12 -2.11 5.92 30.60 0.18 -1.93 16 7 C -0.12 -2.51 4.95 30.61 0.15 -2.36 16 8 C -0.06 -1.07 1.37 -10.78 -0.01 -1.08 16 9 H 0.06 1.30 7.96 -2.39 -0.02 1.28 16 10 C -0.14 -2.38 4.96 29.85 0.15 -2.23 16 11 C 0.51 12.69 7.55 87.66 0.66 13.35 16 12 O -0.58 -18.77 13.97 -3.03 -0.04 -18.81 16 13 N -0.72 -17.45 5.33 -463.07 -2.47 -19.92 16 14 C 0.14 3.78 5.07 86.38 0.44 4.22 16 15 C -0.10 -3.05 2.38 -10.72 -0.03 -3.07 16 16 H 0.08 2.36 8.14 -2.38 -0.02 2.34 16 17 C -0.10 -3.01 5.17 30.62 0.16 -2.85 16 18 C -0.13 -4.72 6.08 30.67 0.19 -4.53 16 19 C 0.17 8.26 5.31 86.36 0.46 8.72 16 20 N -0.61 -29.82 2.99 -699.09 -2.09 -31.91 16 21 C -0.26 -13.87 9.59 84.03 0.81 -13.07 16 22 H 0.07 3.66 7.89 -2.91 -0.02 3.63 16 23 C -0.05 -2.97 4.91 84.86 0.42 -2.55 16 24 N -0.94 -55.46 11.19 21.65 0.24 -55.22 16 25 Si 0.97 44.05 29.59 68.60 2.03 46.08 16 26 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 27 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 28 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 29 C 0.15 6.03 5.60 86.36 0.48 6.51 16 30 H 0.05 0.64 8.14 -2.39 -0.02 0.63 16 31 H 0.06 0.69 6.32 -2.38 -0.02 0.67 16 32 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 35 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.05 1.44 5.95 -2.39 -0.01 1.43 16 40 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.12 1.54 6.17 -2.39 -0.01 1.53 16 43 H 0.41 8.57 7.70 -92.71 -0.71 7.86 16 44 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 45 H 0.05 1.56 8.14 -2.39 -0.02 1.55 16 46 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 47 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 48 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 49 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 50 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 51 H 0.05 2.85 6.04 -2.38 -0.01 2.84 16 52 H 0.25 14.29 8.31 -92.70 -0.77 13.52 16 53 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 54 H 0.06 2.15 7.13 -2.39 -0.02 2.13 16 Total: -1.00 -66.31 401.75 2.80 -63.51 By element: Atomic # 1 Polarization: 22.09 SS G_CDS: 0.13 Total: 22.22 kcal Atomic # 6 Polarization: -10.96 SS G_CDS: 5.00 Total: -5.96 kcal Atomic # 7 Polarization: -102.72 SS G_CDS: -4.32 Total: -107.04 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: -0.04 Total: -18.81 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -66.31 2.80 -63.51 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000530642843.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.991 kcal (2) G-P(sol) polarization free energy of solvation -66.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds