Wall clock time and date at job start Tue Mar 31 2020 15:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47425 * 2 1 4 4 C 1.52996 * 109.47605 * 239.99561 * 2 1 3 5 5 C 1.53000 * 109.47194 * 300.00290 * 4 2 1 6 6 C 1.53005 * 109.47064 * 299.99594 * 5 4 2 7 7 C 1.53004 * 109.46836 * 59.99692 * 6 5 4 8 8 C 1.52998 * 109.47252 * 300.00242 * 7 6 5 9 9 H 1.09001 * 109.47081 * 299.99839 * 8 7 6 10 10 C 1.52998 * 109.46836 * 180.02562 * 8 7 6 11 11 C 1.50695 * 109.47416 * 64.99914 * 10 8 7 12 12 O 1.21279 * 119.99941 * 359.97438 * 11 10 8 13 13 N 1.34777 * 120.00053 * 179.97438 * 11 10 8 14 14 C 1.46497 * 119.99962 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47325 * 180.02562 * 14 13 11 16 16 H 1.09008 * 109.52419 * 305.08460 * 15 14 13 17 17 C 1.53039 * 109.50352 * 185.00159 * 15 14 13 18 18 C 1.53038 * 109.54212 * 178.68144 * 17 15 14 19 19 C 1.53197 * 109.31061 * 61.36752 * 18 17 15 20 20 N 1.46933 * 108.77283 * 305.36167 * 19 18 17 21 21 C 1.36936 * 120.62830 * 233.58910 * 20 19 18 22 22 H 1.07997 * 119.99738 * 152.20712 * 21 20 19 23 23 C 1.38815 * 119.99927 * 332.19960 * 21 20 19 24 24 N 1.31617 * 119.99908 * 335.09782 * 23 21 20 25 25 Si 1.86797 * 119.99476 * 155.37289 * 23 21 20 26 26 H 1.48503 * 109.46931 * 179.72690 * 25 23 21 27 27 H 1.48503 * 109.47336 * 299.72352 * 25 23 21 28 28 H 1.48497 * 109.47306 * 59.72707 * 25 23 21 29 29 C 1.46925 * 118.73429 * 53.86625 * 20 19 18 30 30 H 1.08999 * 109.47191 * 299.99893 * 1 2 3 31 31 H 1.08999 * 109.47171 * 60.00438 * 1 2 3 32 32 H 1.09001 * 109.46869 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47837 * 179.97438 * 4 2 1 34 34 H 1.09006 * 109.47167 * 59.99672 * 4 2 1 35 35 H 1.09005 * 109.47539 * 179.97438 * 5 4 2 36 36 H 1.09001 * 109.47121 * 59.99677 * 5 4 2 37 37 H 1.09001 * 109.47219 * 300.00023 * 6 5 4 38 38 H 1.09000 * 109.46827 * 179.97438 * 6 5 4 39 39 H 1.09002 * 109.46852 * 179.97438 * 7 6 5 40 40 H 1.09001 * 109.46946 * 60.00163 * 7 6 5 41 41 H 1.09003 * 109.47358 * 304.99534 * 10 8 7 42 42 H 1.08999 * 109.47247 * 184.99896 * 10 8 7 43 43 H 0.97003 * 120.00117 * 0.02562 * 13 11 10 44 44 H 1.08997 * 109.47357 * 60.00335 * 14 13 11 45 45 H 1.08997 * 109.47518 * 300.00082 * 14 13 11 46 46 H 1.09001 * 109.45725 * 58.65924 * 17 15 14 47 47 H 1.09003 * 109.44759 * 298.69601 * 17 15 14 48 48 H 1.08997 * 109.50100 * 301.41349 * 18 17 15 49 49 H 1.09003 * 109.49581 * 181.31491 * 18 17 15 50 50 H 1.08999 * 109.58390 * 185.57619 * 19 18 17 51 51 H 1.09000 * 109.58911 * 65.15009 * 19 18 17 52 52 H 0.96996 * 120.00450 * 354.52590 * 24 23 21 53 53 H 1.08995 * 109.59248 * 65.92622 * 29 20 19 54 54 H 1.09007 * 109.58059 * 186.35348 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.5301 -2.1638 -1.2491 6 6 2.0401 -2.8850 0.0002 7 6 1.5300 -2.1636 1.2494 8 6 2.0400 -0.7211 1.2493 9 1 3.1300 -0.7211 1.2494 10 6 1.5305 -0.0001 2.4988 11 6 2.1318 -0.6354 3.7258 12 8 2.8926 -1.5730 3.6122 13 7 1.8241 -0.1617 4.9495 14 6 2.4082 -0.7797 6.1424 15 6 1.8988 -0.0585 7.3919 16 1 2.1077 1.0080 7.3076 17 6 2.6028 -0.6207 8.6290 18 6 2.1180 0.1226 9.8759 19 6 0.6099 -0.0914 10.0389 20 7 -0.0621 0.3125 8.7962 21 6 -1.0886 1.2184 8.8208 22 1 -1.2798 1.8414 7.9596 23 6 -1.8836 1.3358 9.9527 24 7 -2.0055 0.3192 10.7797 25 14 -2.7865 2.9342 10.2980 26 1 -3.5662 2.8008 11.5548 27 1 -1.8029 4.0376 10.4405 28 1 -3.7083 3.2350 9.1732 29 6 0.3844 -0.2788 7.5274 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 3.1301 -0.7209 -1.2494 34 1 1.6767 -0.2076 -2.1392 35 1 1.8931 -2.6776 -2.1393 36 1 0.4401 -2.1638 -1.2491 37 1 3.1301 -2.8850 0.0003 38 1 1.6764 -3.9126 0.0004 39 1 1.8930 -2.6777 2.1394 40 1 0.4400 -2.1636 1.2494 41 1 0.4442 -0.0769 2.5451 42 1 1.8188 1.0502 2.4552 43 1 1.2153 0.5880 5.0404 44 1 3.4946 -0.7036 6.0961 45 1 2.1192 -1.8297 6.1862 46 1 3.6799 -0.4904 8.5244 47 1 2.3732 -1.6817 8.7265 48 1 2.3249 1.1873 9.7682 49 1 2.6371 -0.2624 10.7537 50 1 0.2422 0.5148 10.8668 51 1 0.4095 -1.1443 10.2370 52 1 -1.6053 -0.5363 10.5588 53 1 0.1660 -1.3466 7.5249 54 1 -0.1321 0.2039 6.6977 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000530642844.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:57 Heat of formation + Delta-G solvation = -80.210154 kcal Electronic energy + Delta-G solvation = -28322.791389 eV Core-core repulsion = 24678.177722 eV Total energy + Delta-G solvation = -3644.613667 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.27478 -39.97206 -39.23711 -36.42392 -34.79784 -33.77768 -32.55625 -32.24465 -31.91917 -28.99648 -27.38955 -27.05123 -26.16960 -23.94897 -23.30291 -22.80974 -22.25284 -21.32409 -20.55870 -19.38378 -19.28641 -17.95646 -17.01373 -16.76308 -16.51191 -16.22808 -16.09881 -15.57393 -15.43833 -15.39331 -15.12933 -14.91610 -14.71498 -14.39232 -14.03120 -13.83469 -13.73883 -13.70647 -13.42354 -13.28932 -13.17586 -12.73382 -12.63174 -12.42175 -12.39354 -12.19224 -11.99952 -11.91945 -11.90958 -11.76291 -11.70923 -11.62266 -11.48863 -11.13856 -11.10929 -11.06267 -10.79108 -10.51334 -10.45420 -10.02908 -8.93165 -8.24107 -5.39989 1.59065 1.66510 1.69684 1.84937 2.27117 2.66304 3.21775 3.47761 3.68637 3.76653 3.80788 3.87041 3.92078 3.96427 4.05136 4.23864 4.26186 4.32563 4.40460 4.44555 4.48495 4.51524 4.51864 4.60014 4.65129 4.71884 4.76916 4.78149 4.79926 4.83528 4.84595 4.92558 4.98545 5.04708 5.10402 5.12057 5.19427 5.21867 5.22344 5.24587 5.28291 5.29309 5.34340 5.43180 5.45524 5.52058 5.55284 5.61277 5.71651 5.83871 6.38849 6.58140 7.05737 7.29191 7.78039 8.23539 9.00701 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.016996 B = 0.002544 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.027147 B =11004.681905 C =12091.129363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.083 4.083 3 H 0.078 0.922 4 C -0.113 4.113 5 C -0.119 4.119 6 C -0.116 4.116 7 C -0.120 4.120 8 C -0.059 4.059 9 H 0.059 0.941 10 C -0.135 4.135 11 C 0.507 3.493 12 O -0.578 6.578 13 N -0.724 5.724 14 C 0.139 3.861 15 C -0.099 4.099 16 H 0.075 0.925 17 C -0.098 4.098 18 C -0.125 4.125 19 C 0.151 3.849 20 N -0.617 5.617 21 C -0.353 4.353 22 H 0.056 0.944 23 C -0.079 4.079 24 N -0.945 5.945 25 Si 1.114 2.886 26 H -0.295 1.295 27 H -0.279 1.279 28 H -0.274 1.274 29 C 0.156 3.844 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.051 0.949 38 H 0.057 0.943 39 H 0.050 0.950 40 H 0.062 0.938 41 H 0.108 0.892 42 H 0.114 0.886 43 H 0.410 0.590 44 H 0.069 0.931 45 H 0.052 0.948 46 H 0.082 0.918 47 H 0.055 0.945 48 H 0.055 0.945 49 H 0.073 0.927 50 H 0.043 0.957 51 H 0.000 1.000 52 H 0.253 0.747 53 H 0.004 0.996 54 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.289 0.220 -22.137 24.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.101 4.101 3 H 0.097 0.903 4 C -0.150 4.150 5 C -0.156 4.156 6 C -0.154 4.154 7 C -0.158 4.158 8 C -0.078 4.078 9 H 0.077 0.923 10 C -0.174 4.174 11 C 0.296 3.704 12 O -0.459 6.459 13 N -0.376 5.376 14 C 0.014 3.986 15 C -0.119 4.119 16 H 0.094 0.906 17 C -0.136 4.136 18 C -0.164 4.164 19 C 0.026 3.974 20 N -0.341 5.341 21 C -0.483 4.483 22 H 0.074 0.926 23 C -0.275 4.275 24 N -0.587 5.587 25 Si 0.939 3.061 26 H -0.222 1.222 27 H -0.205 1.205 28 H -0.200 1.200 29 C 0.030 3.970 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.080 0.920 41 H 0.126 0.874 42 H 0.132 0.868 43 H 0.246 0.754 44 H 0.088 0.912 45 H 0.070 0.930 46 H 0.101 0.899 47 H 0.074 0.926 48 H 0.074 0.926 49 H 0.092 0.908 50 H 0.061 0.939 51 H 0.018 0.982 52 H 0.063 0.937 53 H 0.022 0.978 54 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.842 0.353 -21.133 22.910 hybrid contribution 0.481 -0.955 -0.481 1.173 sum 9.323 -0.602 -21.614 23.546 Atomic orbital electron populations 1.22010 0.94815 1.02123 1.02180 1.21115 0.96328 0.99154 0.93529 0.90334 1.21548 1.00353 0.95524 0.97592 1.21570 1.01102 0.95783 0.97137 1.21481 1.00207 0.98804 0.94880 1.21683 1.00235 0.95720 0.98132 1.20835 0.99669 0.94537 0.92775 0.92288 1.21874 1.02767 1.01846 0.90951 1.21305 0.80702 0.83006 0.85403 1.90641 1.37991 1.30044 1.87190 1.46129 1.49146 1.36646 1.05681 1.21188 0.97754 0.96410 0.83242 1.21771 0.96038 1.00225 0.93891 0.90638 1.21349 0.99931 0.99107 0.93209 1.21911 0.95767 1.00316 0.98413 1.20861 0.91836 0.95479 0.89246 1.44379 1.37465 1.49846 1.02444 1.20245 1.09292 1.14266 1.04490 0.92608 1.27205 0.98129 1.05797 0.96331 1.70902 1.44464 1.01499 1.41853 0.82865 0.75341 0.71946 0.75965 1.22162 1.20499 1.19954 1.21086 0.93100 0.94552 0.88231 0.92223 0.92010 0.92459 0.92439 0.90870 0.91666 0.91433 0.93023 0.92429 0.93082 0.91987 0.87429 0.86756 0.75417 0.91234 0.92975 0.89929 0.92610 0.92635 0.90816 0.93892 0.98239 0.93746 0.97794 0.92648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 8.15 71.98 0.59 -1.36 16 2 C -0.08 -1.13 2.72 -10.80 -0.03 -1.16 16 3 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 4 C -0.11 -1.47 5.45 30.59 0.17 -1.30 16 5 C -0.12 -1.66 5.65 30.60 0.17 -1.49 16 6 C -0.12 -2.10 5.92 30.60 0.18 -1.92 16 7 C -0.12 -2.50 4.67 30.59 0.14 -2.35 16 8 C -0.06 -1.08 1.61 -10.79 -0.02 -1.10 16 9 H 0.06 1.29 7.95 -2.39 -0.02 1.27 16 10 C -0.13 -2.36 4.67 29.85 0.14 -2.22 16 11 C 0.51 12.75 7.55 87.66 0.66 13.41 16 12 O -0.58 -18.72 13.96 -3.03 -0.04 -18.77 16 13 N -0.72 -17.68 5.33 -463.08 -2.47 -20.15 16 14 C 0.14 3.78 5.07 86.38 0.44 4.22 16 15 C -0.10 -3.05 2.39 -10.57 -0.03 -3.07 16 16 H 0.08 2.36 8.14 -2.38 -0.02 2.34 16 17 C -0.10 -2.95 5.16 30.62 0.16 -2.79 16 18 C -0.13 -4.45 6.08 30.67 0.19 -4.26 16 19 C 0.15 7.11 4.68 86.36 0.40 7.51 16 20 N -0.62 -30.22 2.85 -698.23 -1.99 -32.21 16 21 C -0.35 -19.26 9.49 84.03 0.80 -18.46 16 22 H 0.06 2.98 7.94 -2.91 -0.02 2.95 16 23 C -0.08 -4.42 4.69 84.86 0.40 -4.02 16 24 N -0.95 -57.66 12.42 21.65 0.27 -57.39 16 25 Si 1.11 50.02 29.98 68.60 2.06 52.08 16 26 H -0.30 -13.66 7.11 99.48 0.71 -12.95 16 27 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 28 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 29 C 0.16 6.16 5.63 86.51 0.49 6.64 16 30 H 0.06 0.72 6.55 -2.39 -0.02 0.71 16 31 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.06 0.79 4.81 -2.39 -0.01 0.78 16 33 H 0.06 0.79 8.14 -2.39 -0.02 0.78 16 34 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 35 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 36 H 0.07 0.91 6.43 -2.39 -0.02 0.90 16 37 H 0.05 1.00 8.14 -2.39 -0.02 0.99 16 38 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.05 1.39 5.95 -2.39 -0.01 1.37 16 40 H 0.06 1.21 6.43 -2.39 -0.02 1.19 16 41 H 0.11 1.65 6.71 -2.39 -0.02 1.64 16 42 H 0.11 1.50 8.14 -2.39 -0.02 1.49 16 43 H 0.41 8.82 7.72 -92.71 -0.72 8.10 16 44 H 0.07 1.83 8.14 -2.39 -0.02 1.82 16 45 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 46 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 47 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 48 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 49 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 50 H 0.04 2.30 6.30 -2.39 -0.02 2.29 16 51 H 0.00 -0.02 7.86 -2.39 -0.02 -0.04 16 52 H 0.25 15.79 6.69 -92.71 -0.62 15.17 16 53 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 54 H 0.06 2.11 7.16 -2.38 -0.02 2.09 16 Total: -1.00 -68.12 394.22 2.97 -65.15 By element: Atomic # 1 Polarization: 24.72 SS G_CDS: 0.29 Total: 25.01 kcal Atomic # 6 Polarization: -18.57 SS G_CDS: 4.85 Total: -13.72 kcal Atomic # 7 Polarization: -105.57 SS G_CDS: -4.19 Total: -109.75 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: -0.04 Total: -18.77 kcal Atomic # 14 Polarization: 50.02 SS G_CDS: 2.06 Total: 52.08 kcal Total: -68.12 2.97 -65.15 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000530642844.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.061 kcal (2) G-P(sol) polarization free energy of solvation -68.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds